Wall clock time and date at job start Sun Mar 29 2020 23:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35954 * 117.00604 * 2 1 4 4 C 1.38649 * 120.04354 * 359.97438 * 3 2 1 5 5 C 1.38382 * 119.93872 * 179.74433 * 4 3 2 6 6 F 1.35105 * 119.97375 * 180.29788 * 5 4 3 7 7 C 1.38465 * 120.04720 * 0.52964 * 5 4 3 8 8 C 1.50706 * 119.95218 * 179.76714 * 7 5 4 9 9 C 1.53004 * 109.47045 * 279.72592 * 8 7 5 10 10 C 1.52996 * 109.47149 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.46957 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00492 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99539 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00362 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99784 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46844 * 90.00112 * 15 13 11 17 17 H 1.48493 * 109.47329 * 210.00155 * 15 13 11 18 18 H 1.48505 * 109.46963 * 330.00430 * 15 13 11 19 19 C 1.38243 * 120.09972 * 359.49326 * 7 5 4 20 20 C 1.38321 * 120.05626 * 0.22634 * 19 7 5 21 21 F 1.35095 * 120.02572 * 180.02562 * 20 19 7 22 22 H 1.09007 * 109.46983 * 300.00170 * 1 2 3 23 23 H 1.09001 * 109.47209 * 59.99825 * 1 2 3 24 24 H 1.08998 * 109.47460 * 180.02562 * 1 2 3 25 25 H 1.07998 * 120.02931 * 0.02562 * 4 3 2 26 26 H 1.08999 * 109.46628 * 39.72523 * 8 7 5 27 27 H 1.08996 * 109.47099 * 159.72401 * 8 7 5 28 28 H 1.09003 * 109.47098 * 299.99939 * 9 8 7 29 29 H 1.08999 * 109.47079 * 59.99492 * 9 8 7 30 30 H 1.09010 * 109.46951 * 299.99615 * 10 9 8 31 31 H 1.08996 * 109.47024 * 59.99791 * 10 9 8 32 32 H 0.96998 * 119.99987 * 180.02562 * 14 13 11 33 33 H 1.08001 * 119.97218 * 180.25561 * 19 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2922 2.3748 -0.0005 5 6 1.9228 3.6065 0.0048 6 9 1.1886 4.7407 0.0104 7 6 3.3056 3.6775 -0.0004 8 6 3.9901 5.0201 0.0002 9 6 3.9992 5.5885 -1.4203 10 6 4.6935 6.9519 -1.4197 11 6 4.7018 7.5120 -2.8187 12 1 4.2568 6.9515 -3.6275 13 6 5.2777 8.7401 -3.0661 14 7 5.8192 9.4230 -2.0812 15 14 5.2886 9.4341 -4.8004 16 1 4.0624 10.2432 -5.0175 17 1 6.4866 10.2924 -4.9825 18 1 5.3254 8.3184 -5.7798 19 6 4.0593 2.5186 -0.0003 20 6 3.4334 1.2851 0.0002 21 9 4.1705 0.1530 0.0007 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 0.2136 2.3197 -0.0005 26 1 3.4535 5.7012 0.6607 27 1 5.0153 4.9051 0.3520 28 1 4.5357 4.9074 -2.0809 29 1 2.9739 5.7035 -1.7722 30 1 4.1565 7.6328 -0.7593 31 1 5.7187 6.8373 -1.0677 32 1 6.2239 10.2871 -2.2552 33 1 5.1378 2.5764 -0.0002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:55 Heat of formation + Delta-G solvation = -124.444876 kcal Electronic energy + Delta-G solvation = -18275.526886 eV Core-core repulsion = 14937.013740 eV Total energy + Delta-G solvation = -3338.513146 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 256.102 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.86586 -48.84461 -40.13760 -37.86106 -34.55939 -32.50826 -30.59516 -30.04271 -27.96967 -26.33277 -23.67226 -23.00595 -21.49437 -20.12457 -18.70277 -17.70234 -17.15670 -16.44283 -16.29446 -15.85283 -15.39880 -15.17989 -14.83004 -14.52182 -14.48266 -14.17544 -13.79244 -13.01405 -12.62120 -12.48400 -12.24904 -12.06539 -11.87434 -11.38974 -11.26405 -11.09714 -10.78141 -10.55107 -10.48854 -9.69327 -9.37824 -9.12194 -8.96840 -8.33129 -8.11658 -5.98355 -4.00476 0.85241 1.00945 2.84289 3.26760 3.33364 3.39454 3.43134 4.03957 4.12606 4.44910 4.47804 4.68416 4.80704 4.84211 4.95255 5.15862 5.31191 5.37505 5.58454 5.62917 5.76273 5.96337 6.01498 6.17871 6.26233 6.52358 6.72673 6.85098 6.99697 7.12277 7.69021 7.83264 8.01708 8.44565 9.06487 9.63485 11.12988 Molecular weight = 256.10amu Principal moments of inertia in cm(-1) A = 0.033123 B = 0.004076 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.135228 B = 6867.212084 C = 7089.120030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.307 6.307 3 C 0.109 3.891 4 C -0.218 4.218 5 C 0.132 3.868 6 F -0.125 7.125 7 C -0.105 4.105 8 C -0.081 4.081 9 C -0.105 4.105 10 C 0.021 3.979 11 C -0.520 4.520 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.088 4.088 20 C 0.061 3.939 21 F -0.131 7.131 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.103 0.897 25 H 0.148 0.852 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.260 0.740 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.535 -17.290 6.409 20.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.063 3.937 4 C -0.238 4.238 5 C 0.113 3.887 6 F -0.103 7.103 7 C -0.106 4.106 8 C -0.119 4.119 9 C -0.142 4.142 10 C -0.016 4.016 11 C -0.558 4.558 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.107 4.107 20 C 0.041 3.959 21 F -0.110 7.110 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.121 0.879 25 H 0.165 0.835 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.367 -17.323 6.446 20.722 hybrid contribution -0.304 0.589 -0.960 1.167 sum -9.671 -16.735 5.486 20.092 Atomic orbital electron populations 1.23145 0.77843 1.04306 1.01747 1.86144 1.21813 1.25331 1.88725 1.18570 0.90530 0.85026 0.99569 1.20974 1.01131 0.90397 1.11307 1.17220 0.88771 0.81678 1.01073 1.91544 1.76755 1.48642 1.93360 1.20056 0.91485 0.97512 1.01574 1.20761 1.00035 0.90244 1.00822 1.21653 1.00915 0.99506 0.92154 1.19110 0.95468 0.89915 0.97089 1.21257 1.37054 1.03208 0.94316 0.92727 1.25020 0.95433 0.97045 0.96949 1.69962 1.38681 1.13675 1.31230 0.86607 0.77491 0.79030 0.84961 1.20674 1.21222 1.19881 1.20844 1.01450 0.88761 0.99626 1.16901 0.85761 0.83069 1.10176 1.91496 1.76345 1.48766 1.94372 0.92324 0.92230 0.87860 0.83470 0.90616 0.90499 0.93101 0.93178 0.96480 0.96475 0.93022 0.82857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.55 10.36 -19.60 -0.20 -3.75 16 3 C 0.11 1.38 6.69 -39.18 -0.26 1.12 16 4 C -0.22 -2.63 9.02 -39.38 -0.35 -2.98 16 5 C 0.13 1.89 7.24 -39.44 -0.29 1.60 16 6 F -0.12 -1.94 16.65 2.25 0.04 -1.91 16 7 C -0.11 -1.54 5.14 -104.53 -0.54 -2.08 16 8 C -0.08 -1.36 5.07 -27.88 -0.14 -1.50 16 9 C -0.10 -2.15 5.13 -26.73 -0.14 -2.29 16 10 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 11 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 12 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 15 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 C -0.09 -1.17 9.64 -39.55 -0.38 -1.55 16 20 C 0.06 0.82 7.31 -39.30 -0.29 0.54 16 21 F -0.13 -1.84 17.11 2.25 0.04 -1.80 16 22 H 0.06 0.35 7.66 -51.92 -0.40 -0.05 16 23 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 24 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.15 1.38 6.30 -52.49 -0.33 1.05 16 26 H 0.08 1.27 7.93 -51.93 -0.41 0.86 16 27 H 0.08 1.19 8.00 -51.93 -0.42 0.77 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.15 1.77 8.03 -52.49 -0.42 1.35 16 LS Contribution 295.20 15.07 4.45 4.45 Total: -1.00 -31.37 295.20 -5.94 -37.31 By element: Atomic # 1 Polarization: -1.53 SS G_CDS: -4.03 Total: -5.56 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -1.95 Total: -19.22 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.74 Total: -26.32 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: -0.20 Total: -3.75 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.08 Total: -3.71 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.37 -5.94 -37.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.139 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds