Wall clock time and date at job start Mon Mar 30 2020 00:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 N 1.46490 * 109.47115 * 64.99762 * 4 2 1 6 6 C 1.36946 * 119.99985 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99620 * 0.02562 * 6 5 4 8 8 C 1.38814 * 120.00132 * 179.97438 * 6 5 4 9 9 N 1.31626 * 119.99804 * 0.02562 * 8 6 5 10 10 Si 1.86792 * 120.00065 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47078 * 90.00469 * 10 8 6 12 12 H 1.48495 * 109.47579 * 210.00288 * 10 8 6 13 13 H 1.48504 * 109.47337 * 330.00808 * 10 8 6 14 14 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 15 15 N 1.46497 * 109.47408 * 295.00294 * 14 2 1 16 16 C 1.34772 * 120.00342 * 180.02562 * 15 14 2 17 17 O 1.21282 * 120.00300 * 359.97438 * 16 15 14 18 18 C 1.50707 * 120.00075 * 180.02562 * 16 15 14 19 19 H 1.08998 * 110.43551 * 300.69341 * 18 16 15 20 20 C 1.54812 * 110.48550 * 178.15291 * 18 16 15 21 21 C 1.55227 * 101.98475 * 220.51508 * 20 18 16 22 22 O 1.44375 * 103.56480 * 36.88127 * 21 20 18 23 23 C 1.43736 * 106.97834 * 320.01244 * 22 21 20 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 1.09007 * 109.47135 * 184.99942 * 4 2 1 28 28 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 29 29 H 0.96999 * 120.00755 * 0.02562 * 5 4 2 30 30 H 0.96997 * 119.99599 * 179.97438 * 9 8 6 31 31 H 1.09002 * 109.46906 * 55.00224 * 14 2 1 32 32 H 1.09006 * 109.47717 * 174.99599 * 14 2 1 33 33 H 0.97008 * 119.99817 * 359.97438 * 15 14 2 34 34 H 1.08999 * 110.91203 * 338.63882 * 20 18 16 35 35 H 1.09000 * 110.90860 * 102.24806 * 20 18 16 36 36 H 1.09002 * 110.52484 * 278.38628 * 21 20 18 37 37 H 1.09001 * 110.77853 * 155.50568 * 21 20 18 38 38 H 1.09003 * 109.88155 * 267.09073 * 23 22 21 39 39 H 1.08996 * 109.88084 * 145.93853 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 1.6524 0.0355 -2.4423 6 6 2.0019 -0.4201 -3.6856 7 1 2.5630 -1.3374 -3.7865 8 6 1.6342 0.2966 -4.8161 9 7 0.9500 1.4143 -4.6931 10 14 2.1104 -0.3251 -6.5120 11 1 1.0404 -1.2143 -7.0316 12 1 2.2853 0.8281 -7.4310 13 1 3.3838 -1.0837 -6.4216 14 6 2.0400 -0.7212 1.2491 15 7 1.6525 0.0352 2.4423 16 6 1.9966 -0.4132 3.6658 17 8 2.6266 -1.4433 3.7791 18 6 1.5973 0.3647 4.8933 19 1 2.0132 1.3716 4.8576 20 6 2.0629 -0.3687 6.1747 21 6 0.8474 -0.1697 7.1195 22 8 -0.2890 -0.2678 6.2345 23 6 0.0627 0.4192 5.0219 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 3.1264 -0.7994 -1.2057 28 1 1.6055 -1.7197 -1.2953 29 1 1.1488 0.8595 -2.3518 30 1 0.6934 1.9152 -5.4830 31 1 1.6055 -1.7198 1.2950 32 1 3.1264 -0.7995 1.2055 33 1 1.1488 0.8594 2.3517 34 1 2.2326 -1.4271 5.9773 35 1 2.9582 0.0974 6.5861 36 1 0.8849 0.8135 7.5886 37 1 0.8135 -0.9536 7.8762 38 1 -0.2682 1.4564 5.0742 39 1 -0.3986 -0.0766 4.1679 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753617668.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:17:19 Heat of formation + Delta-G solvation = -85.192954 kcal Electronic energy + Delta-G solvation = -18930.288092 eV Core-core repulsion = 15872.690398 eV Total energy + Delta-G solvation = -3057.597694 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.56891 -38.70553 -36.83753 -34.43222 -32.83984 -32.25105 -30.20671 -29.48666 -26.56127 -25.40977 -23.67893 -22.75956 -21.94282 -20.47967 -19.68603 -17.77166 -17.04499 -16.79680 -16.34260 -15.74855 -15.33428 -15.04895 -14.55378 -14.26281 -13.97827 -13.61249 -13.21606 -13.11227 -12.66560 -12.37439 -12.32157 -12.09021 -11.79315 -11.67105 -11.25753 -11.08208 -10.93040 -10.72712 -10.60764 -10.46323 -10.26254 -10.04605 -9.78779 -9.66267 -9.10201 -8.89083 -6.93941 -5.78594 -3.07037 2.47245 3.03577 3.43087 3.48418 3.49954 3.57435 4.02402 4.44267 4.54890 4.58124 4.75060 4.86330 4.94184 5.03816 5.18718 5.29139 5.30912 5.35835 5.38724 5.51516 5.56359 5.78087 5.83496 5.93518 5.95596 6.08248 6.21206 6.36055 6.42438 6.46447 6.62864 6.74809 6.84274 7.39191 7.69260 8.09251 8.40683 9.51930 10.08977 10.43725 11.44451 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.059638 B = 0.003189 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.385508 B = 8777.417931 C = 9049.656144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.126 3.874 15 N -0.723 5.723 16 C 0.519 3.481 17 O -0.537 6.537 18 C -0.149 4.149 19 H 0.111 0.889 20 C -0.140 4.140 21 C 0.045 3.955 22 O -0.374 6.374 23 C 0.057 3.943 24 H 0.042 0.958 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.021 0.979 28 H 0.022 0.978 29 H 0.384 0.616 30 H 0.255 0.745 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.401 0.599 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.597 0.757 22.252 22.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.376 5.376 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.002 3.998 15 N -0.375 5.375 16 C 0.305 3.695 17 O -0.414 6.414 18 C -0.170 4.170 19 H 0.129 0.871 20 C -0.178 4.178 21 C -0.031 4.031 22 O -0.293 6.293 23 C -0.020 4.020 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.218 0.782 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.235 0.765 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.114 0.886 38 H 0.088 0.912 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.264 -0.202 22.216 22.219 hybrid contribution 0.080 0.615 -1.161 1.316 sum -0.184 0.413 21.055 21.060 Atomic orbital electron populations 1.21796 0.94623 1.01996 1.01494 1.21554 0.96744 1.00482 0.94181 0.90531 1.20573 0.96604 0.94222 0.85369 1.42338 1.66956 1.27667 1.00590 1.19243 1.28677 1.05446 0.83653 0.91150 1.24739 1.01013 0.97401 0.97881 1.69658 1.43580 1.16604 1.28508 0.86173 0.78039 0.77521 0.84367 1.21707 1.21775 1.20748 1.21446 1.00179 0.95316 0.82864 1.46081 1.57563 1.27889 1.05947 1.20239 0.79367 0.85564 0.84357 1.90699 1.39871 1.24355 1.86471 1.22772 0.98016 1.01419 0.94823 0.87131 1.23163 0.98609 1.03422 0.92636 1.23656 0.84413 1.01711 0.93325 1.88904 1.37658 1.76630 1.26075 1.23144 0.91922 0.97969 0.88975 0.93936 0.92771 0.91100 0.96145 0.95984 0.78209 0.93520 0.91264 0.91303 0.76478 0.88384 0.89673 0.92005 0.88593 0.91166 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.94 37.16 0.33 -1.71 16 2 C -0.11 -1.66 2.46 -90.62 -0.22 -1.88 16 3 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 4 C 0.16 3.16 5.65 -4.04 -0.02 3.14 16 5 N -0.73 -18.21 5.33 -59.91 -0.32 -18.53 16 6 C -0.24 -6.68 9.99 -15.05 -0.15 -6.83 16 7 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 10 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.13 1.69 5.06 -4.05 -0.02 1.67 16 15 N -0.72 -8.01 5.18 -60.30 -0.31 -8.32 16 16 C 0.52 6.26 6.95 -10.98 -0.08 6.19 16 17 O -0.54 -8.63 15.45 5.56 0.09 -8.55 16 18 C -0.15 -1.27 3.43 -90.24 -0.31 -1.58 16 19 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 20 C -0.14 -1.19 6.53 -24.60 -0.16 -1.35 16 21 C 0.05 0.34 7.72 38.34 0.30 0.64 16 22 O -0.37 -3.92 11.52 -35.23 -0.41 -4.33 16 23 C 0.06 0.48 7.33 37.73 0.28 0.76 16 24 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.38 9.92 6.85 -40.82 -0.28 9.64 16 30 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.40 3.47 7.66 -40.82 -0.31 3.15 16 34 H 0.10 1.06 6.90 -51.93 -0.36 0.70 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.79 7.63 -51.93 -0.40 0.40 16 LS Contribution 320.09 15.07 4.82 4.82 Total: -1.00 -33.16 320.09 -6.87 -40.03 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.29 Total: 6.27 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -0.15 Total: -1.47 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.09 Total: -54.16 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.32 Total: -12.88 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.16 -6.87 -40.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753617668.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.167 kcal (2) G-P(sol) polarization free energy of solvation -33.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds