Wall clock time and date at job start Mon Mar 30 2020 00:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 N 1.46499 * 109.46679 * 294.99474 * 4 2 1 6 6 C 1.36942 * 119.99744 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99875 * 0.02562 * 6 5 4 8 8 C 1.38814 * 120.00001 * 180.02562 * 6 5 4 9 9 N 1.31618 * 120.00025 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00099 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47161 * 60.00176 * 10 8 6 12 12 H 1.48494 * 109.47201 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47020 * 300.00501 * 10 8 6 14 14 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 15 15 N 1.46504 * 109.46822 * 64.99847 * 14 2 1 16 16 C 1.34773 * 119.99935 * 179.97438 * 15 14 2 17 17 O 1.21281 * 120.00498 * 0.02562 * 16 15 14 18 18 C 1.50706 * 120.00130 * 179.97438 * 16 15 14 19 19 H 1.09001 * 110.74521 * 62.02265 * 18 16 15 20 20 C 1.55303 * 110.84923 * 185.71678 * 18 16 15 21 21 C 1.54943 * 100.94134 * 152.32775 * 20 18 16 22 22 O 1.43651 * 105.13577 * 323.55461 * 21 20 18 23 23 C 1.43237 * 109.96972 * 24.43111 * 22 21 20 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 28 28 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 29 29 H 0.96996 * 120.00184 * 0.02562 * 5 4 2 30 30 H 0.96998 * 120.00437 * 179.97438 * 9 8 6 31 31 H 1.08994 * 109.47465 * 185.00197 * 14 2 1 32 32 H 1.08998 * 109.47565 * 305.00629 * 14 2 1 33 33 H 0.96995 * 120.00028 * 0.02562 * 15 14 2 34 34 H 1.08995 * 111.12937 * 270.24853 * 20 18 16 35 35 H 1.08999 * 111.12222 * 34.41096 * 20 18 16 36 36 H 1.09001 * 110.31184 * 204.64440 * 21 20 18 37 37 H 1.08997 * 110.39627 * 82.51149 * 21 20 18 38 38 H 1.09001 * 109.82941 * 238.77210 * 23 22 21 39 39 H 1.09000 * 109.90897 * 117.84333 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6525 0.0354 2.4423 6 6 2.0011 -0.4208 3.6856 7 1 2.5621 -1.3382 3.7865 8 6 1.6335 0.2959 4.8162 9 7 0.9495 1.4136 4.6932 10 14 2.1097 -0.3259 6.5120 11 1 3.5888 -0.4153 6.6092 12 1 1.6012 0.6127 7.5442 13 1 1.5172 -1.6699 6.7308 14 6 2.0400 -0.7213 -1.2492 15 7 1.6524 0.0353 -2.4423 16 6 1.9964 -0.4132 -3.6658 17 8 2.6265 -1.4433 -3.7792 18 6 1.5972 0.3648 -4.8933 19 1 2.0497 1.3564 -4.8860 20 6 1.9738 -0.4100 -6.1855 21 6 0.9069 0.1275 -7.1722 22 8 -0.2841 0.2890 -6.3854 23 6 0.0607 0.4628 -5.0061 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6054 -1.7199 1.2952 28 1 3.1263 -0.7995 1.2056 29 1 1.1484 0.8591 2.3517 30 1 0.6922 1.9143 5.4832 31 1 3.1263 -0.7996 -1.2055 32 1 1.6054 -1.7198 -1.2952 33 1 1.1488 0.8593 -2.3517 34 1 2.9801 -0.1546 -6.5175 35 1 1.8704 -1.4857 -6.0428 36 1 0.7363 -0.5914 -7.9735 37 1 1.2203 1.0863 -7.5853 38 1 -0.4048 -0.3200 -4.4071 39 1 -0.2738 1.4409 -4.6603 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753617671.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:17:21 Heat of formation + Delta-G solvation = -85.851398 kcal Electronic energy + Delta-G solvation = -18898.968442 eV Core-core repulsion = 15841.342196 eV Total energy + Delta-G solvation = -3057.626246 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.56030 -38.77927 -36.85524 -34.44008 -32.87215 -32.27568 -30.22946 -29.56129 -26.58345 -25.42822 -23.57608 -22.71420 -22.02852 -20.52996 -19.73141 -17.84003 -17.13083 -16.85558 -16.25439 -15.63348 -15.39746 -14.90360 -14.57421 -14.29600 -13.86900 -13.68146 -13.54110 -13.13525 -12.69206 -12.46143 -12.32820 -12.10547 -11.83664 -11.64862 -11.33022 -11.08707 -10.92607 -10.72973 -10.60277 -10.46502 -10.17603 -10.01650 -9.80490 -9.67488 -9.12583 -8.88954 -6.94391 -5.78643 -3.07217 2.43532 2.99186 3.43568 3.47819 3.48838 3.51058 3.93265 4.44046 4.52406 4.57806 4.74439 4.82872 4.87646 5.02485 5.17634 5.28867 5.34297 5.34804 5.41451 5.51736 5.56014 5.76984 5.78630 5.92361 5.94217 6.07349 6.20284 6.35068 6.41380 6.55879 6.62280 6.74170 6.83532 7.36522 7.68448 8.05861 8.40549 9.51730 10.08723 10.43527 11.44314 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.058885 B = 0.003174 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.387533 B = 8818.423631 C = 9125.670453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.076 0.924 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.125 3.875 15 N -0.722 5.722 16 C 0.521 3.479 17 O -0.537 6.537 18 C -0.149 4.149 19 H 0.113 0.887 20 C -0.135 4.135 21 C 0.049 3.951 22 O -0.381 6.381 23 C 0.063 3.937 24 H 0.042 0.958 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.022 0.978 28 H 0.021 0.979 29 H 0.384 0.616 30 H 0.256 0.744 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.401 0.599 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.521 0.257 -21.954 21.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.212 1.212 14 C 0.002 3.998 15 N -0.374 5.374 16 C 0.307 3.693 17 O -0.414 6.414 18 C -0.170 4.170 19 H 0.131 0.869 20 C -0.173 4.173 21 C -0.027 4.027 22 O -0.300 6.300 23 C -0.014 4.014 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.218 0.782 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.236 0.764 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.206 -0.595 -21.951 21.960 hybrid contribution 0.125 0.471 1.197 1.293 sum -0.082 -0.123 -20.754 20.755 Atomic orbital electron populations 1.21796 0.94610 1.01989 1.01520 1.21557 0.96755 1.00495 0.94168 0.90514 1.20574 0.96603 0.94215 0.85372 1.42329 1.66958 1.27680 1.00572 1.19197 1.28808 1.05468 0.83665 0.91202 1.24735 1.00970 0.97392 0.97875 1.69641 1.43463 1.16607 1.28650 0.86249 0.78026 0.77720 0.84089 1.21256 1.21682 1.21249 1.21454 1.00204 0.95308 0.82863 1.46102 1.57421 1.27906 1.05949 1.20140 0.79483 0.85506 0.84211 1.90716 1.39812 1.24300 1.86587 1.22955 0.97987 1.01388 0.94715 0.86939 1.23158 1.00092 1.01936 0.92122 1.23449 0.84340 1.00475 0.94415 1.88424 1.30014 1.94157 1.17417 1.23082 0.92008 1.02229 0.84127 0.93916 0.91092 0.92779 0.95994 0.96147 0.78203 0.93454 0.91270 0.91245 0.76437 0.89299 0.88878 0.89329 0.91877 0.90658 0.90381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.94 37.16 0.33 -1.69 16 2 C -0.11 -1.65 2.46 -90.62 -0.22 -1.87 16 3 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 4 C 0.16 3.14 5.65 -4.04 -0.02 3.12 16 5 N -0.73 -18.16 5.33 -59.90 -0.32 -18.48 16 6 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 7 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 9 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 10 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 C 0.13 1.66 5.07 -4.04 -0.02 1.64 16 15 N -0.72 -7.87 5.23 -60.29 -0.32 -8.18 16 16 C 0.52 6.14 7.02 -10.98 -0.08 6.06 16 17 O -0.54 -8.45 15.76 5.56 0.09 -8.36 16 18 C -0.15 -1.26 3.39 -89.82 -0.30 -1.57 16 19 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 20 C -0.14 -1.12 6.23 -24.48 -0.15 -1.27 16 21 C 0.05 0.37 7.78 38.18 0.30 0.67 16 22 O -0.38 -3.84 11.36 -35.23 -0.40 -4.24 16 23 C 0.06 0.53 7.35 37.88 0.28 0.81 16 24 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 25 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.38 9.90 6.85 -40.82 -0.28 9.62 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.40 3.44 7.65 -40.82 -0.31 3.13 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.94 7.47 -51.93 -0.39 0.55 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.69 7.81 -51.93 -0.41 0.28 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 320.82 15.07 4.83 4.83 Total: -1.00 -32.84 320.82 -6.88 -39.72 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.33 Total: 6.12 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -0.14 Total: -1.46 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.09 Total: -53.96 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -0.31 Total: -12.60 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.84 -6.88 -39.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753617671.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.134 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds