Wall clock time and date at job start Mon Mar 30 2020 00:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.46446 * 2 1 4 4 C 1.53001 * 109.47276 * 119.99305 * 2 1 3 5 5 N 1.46496 * 109.47205 * 295.00831 * 4 2 1 6 6 C 1.36945 * 119.99718 * 179.97438 * 5 4 2 7 7 H 1.07997 * 119.99756 * 359.97438 * 6 5 4 8 8 C 1.38805 * 119.99878 * 179.97438 * 6 5 4 9 9 N 1.31624 * 120.00257 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99929 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47174 * 270.00277 * 10 8 6 12 12 H 1.48501 * 109.47062 * 30.00228 * 10 8 6 13 13 H 1.48499 * 109.46981 * 150.00382 * 10 8 6 14 14 C 1.52995 * 109.47723 * 240.00117 * 2 1 3 15 15 N 1.46509 * 109.47137 * 64.99261 * 14 2 1 16 16 C 1.34771 * 119.99959 * 180.02562 * 15 14 2 17 17 O 1.21287 * 120.00295 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.99891 * 180.02562 * 16 15 14 19 19 H 1.08996 * 110.45952 * 300.69502 * 18 16 15 20 20 C 1.54513 * 110.50946 * 178.09241 * 18 16 15 21 21 C 1.54479 * 104.06517 * 241.35110 * 20 18 16 22 22 O 1.44432 * 104.79951 * 23.98465 * 21 20 18 23 23 C 1.44785 * 105.29488 * 319.44976 * 22 21 20 24 24 H 1.09000 * 109.47153 * 300.00059 * 1 2 3 25 25 H 1.08999 * 109.46631 * 60.00625 * 1 2 3 26 26 H 1.09008 * 109.46446 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46922 * 174.99872 * 4 2 1 28 28 H 1.09000 * 109.46483 * 55.00692 * 4 2 1 29 29 H 0.96996 * 120.00499 * 359.97438 * 5 4 2 30 30 H 0.97001 * 119.99885 * 179.97438 * 9 8 6 31 31 H 1.08991 * 109.47415 * 184.99963 * 14 2 1 32 32 H 1.09004 * 109.46771 * 304.99801 * 14 2 1 33 33 H 0.96994 * 119.99675 * 0.02562 * 15 14 2 34 34 H 1.08996 * 110.51138 * 0.02562 * 20 18 16 35 35 H 1.09006 * 110.50663 * 122.57357 * 20 18 16 36 36 H 1.09002 * 110.36764 * 142.81099 * 21 20 18 37 37 H 1.08998 * 110.37586 * 265.15459 * 21 20 18 38 38 H 1.09005 * 110.42787 * 281.78456 * 23 22 21 39 39 H 1.08992 * 110.48811 * 159.33065 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 1.2493 5 7 1.6524 0.0355 2.4424 6 6 2.0011 -0.4206 3.6857 7 1 2.5615 -1.3383 3.7866 8 6 1.6342 0.2965 4.8160 9 7 0.9508 1.4147 4.6931 10 14 2.1092 -0.3260 6.5120 11 1 1.0380 -1.2137 7.0314 12 1 3.3817 -1.0862 6.4218 13 1 2.2855 0.8270 7.4311 14 6 2.0402 -0.7212 -1.2492 15 7 1.6525 0.0354 -2.4424 16 6 1.9957 -0.4135 -3.6659 17 8 2.6259 -1.4436 -3.7792 18 6 1.5974 0.3650 -4.8932 19 1 0.5133 0.4642 -4.9463 20 6 2.1416 -0.3182 -6.1679 21 6 3.0803 0.7397 -6.7892 22 8 3.4702 1.5823 -5.6828 23 6 2.2691 1.7561 -4.8934 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5137 -0.8901 26 1 -0.3632 -1.0278 -0.0005 27 1 3.1264 -0.7993 1.2056 28 1 1.6055 -1.7197 1.2952 29 1 1.1487 0.8595 2.3517 30 1 0.6941 1.9156 5.4831 31 1 3.1264 -0.7993 -1.2055 32 1 1.6056 -1.7198 -1.2951 33 1 1.1488 0.8593 -2.3518 34 1 2.6982 -1.2192 -5.9103 35 1 1.3263 -0.5567 -6.8510 36 1 3.9554 0.2597 -7.2274 37 1 2.5496 1.3229 -7.5417 38 1 1.6133 2.4939 -5.3558 39 1 2.5211 2.0559 -3.8762 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753617672.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:17:25 Heat of formation + Delta-G solvation = -84.221709 kcal Electronic energy + Delta-G solvation = -18967.163997 eV Core-core repulsion = 15909.608419 eV Total energy + Delta-G solvation = -3057.555578 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.56192 -38.60723 -36.80900 -34.41693 -32.78864 -32.23229 -30.19548 -29.42310 -26.56385 -25.40086 -23.79418 -22.72147 -21.86177 -20.42382 -19.66930 -17.71638 -16.97863 -16.78012 -16.30594 -15.80899 -15.30238 -15.09385 -14.52607 -14.19712 -14.03512 -13.61456 -13.18793 -12.92231 -12.66952 -12.39061 -12.22937 -12.04599 -11.78472 -11.63864 -11.25171 -11.07379 -10.92102 -10.71797 -10.59945 -10.45569 -10.28173 -10.04371 -9.78356 -9.65300 -9.07285 -8.88289 -6.93042 -5.77769 -3.06196 2.51028 3.07122 3.43702 3.49031 3.50672 3.64121 4.09192 4.45392 4.56847 4.59042 4.78497 4.85331 5.00615 5.09260 5.19535 5.22650 5.31771 5.36545 5.40979 5.50627 5.57231 5.78917 5.87156 5.93971 5.98291 6.09541 6.22189 6.36824 6.40620 6.46378 6.63394 6.76067 6.85232 7.42549 7.70089 8.13332 8.41483 9.52761 10.09839 10.44652 11.45267 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.050832 B = 0.003238 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.699082 B = 8645.503328 C = 8741.630303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.282 1.282 13 H -0.291 1.291 14 C 0.126 3.874 15 N -0.724 5.724 16 C 0.520 3.480 17 O -0.537 6.537 18 C -0.148 4.148 19 H 0.112 0.888 20 C -0.147 4.147 21 C 0.045 3.955 22 O -0.371 6.371 23 C 0.055 3.945 24 H 0.070 0.930 25 H 0.041 0.959 26 H 0.053 0.947 27 H 0.021 0.979 28 H 0.022 0.978 29 H 0.384 0.616 30 H 0.255 0.745 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.400 0.600 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.423 0.518 -22.534 22.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.207 1.207 13 H -0.218 1.218 14 C 0.003 3.997 15 N -0.375 5.375 16 C 0.306 3.694 17 O -0.414 6.414 18 C -0.169 4.169 19 H 0.130 0.870 20 C -0.185 4.185 21 C -0.032 4.032 22 O -0.289 6.289 23 C -0.023 4.023 24 H 0.089 0.911 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.218 0.782 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.235 0.765 34 H 0.119 0.881 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.671 -0.248 -22.415 22.427 hybrid contribution -0.518 0.303 1.024 1.187 sum -1.189 0.055 -21.391 21.424 Atomic orbital electron populations 1.21793 0.94671 1.01928 1.01463 1.21556 0.96692 1.00522 0.94202 0.90511 1.20573 0.96641 0.94195 0.85368 1.42337 1.66962 1.27660 1.00585 1.19243 1.28710 1.05389 0.83658 0.91147 1.24735 1.01038 0.97382 0.97872 1.69657 1.43624 1.16587 1.28493 0.86175 0.78040 0.77522 0.84384 1.21729 1.20733 1.21773 1.21436 1.00223 0.95238 0.82853 1.46041 1.57632 1.27882 1.05943 1.20233 0.79218 0.85540 0.84457 1.90679 1.39703 1.24653 1.86347 1.22730 1.02767 0.96803 0.94647 0.87044 1.23002 1.00070 1.00817 0.94604 1.23454 0.98993 0.91026 0.89684 1.89237 1.31086 1.70145 1.38471 1.23486 0.87069 0.94130 0.97592 0.91116 0.93960 0.92828 0.96105 0.96010 0.78213 0.93528 0.91288 0.91330 0.76548 0.88099 0.90035 0.88823 0.92170 0.90941 0.88517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.94 37.16 0.33 -1.70 16 2 C -0.11 -1.68 2.46 -90.62 -0.22 -1.90 16 3 H 0.08 1.18 8.14 -51.92 -0.42 0.75 16 4 C 0.16 3.18 5.65 -4.04 -0.02 3.16 16 5 N -0.73 -18.28 5.33 -59.91 -0.32 -18.60 16 6 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 7 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -28.11 13.06 55.49 0.72 -27.38 16 10 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 C 0.13 1.73 5.07 -4.04 -0.02 1.71 16 15 N -0.72 -8.18 5.02 -60.29 -0.30 -8.48 16 16 C 0.52 6.43 7.10 -10.99 -0.08 6.35 16 17 O -0.54 -8.80 15.28 5.55 0.08 -8.72 16 18 C -0.15 -1.27 3.50 -90.20 -0.32 -1.59 16 19 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 20 C -0.15 -1.25 6.67 -25.16 -0.17 -1.42 16 21 C 0.05 0.37 7.63 37.93 0.29 0.66 16 22 O -0.37 -4.14 11.66 -35.23 -0.41 -4.55 16 23 C 0.05 0.46 7.19 37.93 0.27 0.73 16 24 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 25 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 26 H 0.05 0.78 8.14 -51.92 -0.42 0.35 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.38 9.95 6.85 -40.82 -0.28 9.67 16 30 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.40 3.52 7.58 -40.82 -0.31 3.21 16 34 H 0.10 1.11 6.50 -51.93 -0.34 0.77 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.10 0.81 7.59 -51.93 -0.39 0.41 16 LS Contribution 319.52 15.07 4.82 4.82 Total: -1.00 -33.52 319.52 -6.88 -40.39 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.26 Total: 6.45 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -0.18 Total: -1.37 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: 0.10 Total: -54.47 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.33 Total: -13.27 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.52 -6.88 -40.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753617672.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.828 kcal (2) G-P(sol) polarization free energy of solvation -33.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds