Wall clock time and date at job start Sun Mar 29 2020 23:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00107 * 2 1 4 4 H 1.48500 * 109.47585 * 270.00606 * 3 2 1 5 5 H 1.48504 * 109.46636 * 30.00538 * 3 2 1 6 6 H 1.48497 * 109.47167 * 150.00072 * 3 2 1 7 7 C 1.38956 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99488 * 359.97438 * 7 2 1 9 9 N 1.37093 * 120.00033 * 179.97438 * 7 2 1 10 10 C 1.34775 * 119.99970 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99971 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00378 * 180.02562 * 10 9 7 13 13 O 1.42897 * 109.47344 * 179.97438 * 12 10 9 14 14 C 1.36013 * 116.99786 * 179.97438 * 13 12 10 15 15 C 1.38835 * 120.06422 * 90.00390 * 14 13 12 16 16 F 1.35099 * 120.04057 * 359.69358 * 15 14 13 17 17 C 1.38379 * 119.92792 * 179.97438 * 15 14 13 18 18 C 1.38253 * 120.06846 * 0.02562 * 17 15 14 19 19 C 1.38260 * 120.13928 * 359.95897 * 18 17 15 20 20 C 1.38370 * 120.06920 * 0.04275 * 19 18 17 21 21 F 1.35100 * 120.03508 * 180.02562 * 20 19 18 22 22 H 0.97001 * 119.99966 * 359.97438 * 1 2 3 23 23 H 0.96997 * 120.00217 * 359.97438 * 9 7 2 24 24 H 1.09002 * 109.47184 * 59.98968 * 12 10 9 25 25 H 1.09001 * 109.46686 * 299.99526 * 12 10 9 26 26 H 1.08001 * 119.96538 * 179.97438 * 17 15 14 27 27 H 1.08001 * 119.93030 * 180.02562 * 18 17 15 28 28 H 1.07998 * 119.96256 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0466 -1.4000 5 1 1.4456 2.6526 0.7002 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0537 -2.3705 -0.0021 11 8 3.4473 -3.4210 -0.0021 12 6 5.5607 -2.3706 -0.0021 13 8 6.0370 -3.7178 -0.0027 14 6 7.3854 -3.8960 -0.0033 15 6 8.0755 -3.9876 1.1979 16 9 7.4092 -3.8936 2.3694 17 6 9.4472 -4.1694 1.1940 18 6 10.1306 -4.2593 -0.0044 19 6 9.4463 -4.1688 -1.2024 20 6 8.0746 -3.9870 -1.2051 21 9 7.4064 -3.8992 -2.3761 22 1 -0.4850 0.8401 0.0004 23 1 3.8648 -0.3633 -0.0014 24 1 5.9241 -1.8574 0.8882 25 1 5.9240 -1.8560 -0.8917 26 1 9.9847 -4.2403 2.1281 27 1 11.2012 -4.4016 -0.0049 28 1 9.9829 -4.2399 -2.1369 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108660708.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:17 Heat of formation + Delta-G solvation = -126.731752 kcal Electronic energy + Delta-G solvation = -18368.488964 eV Core-core repulsion = 14828.617646 eV Total energy + Delta-G solvation = -3539.871318 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.065 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.08706 -49.05270 -39.71354 -38.45484 -37.13194 -34.02496 -31.75953 -30.61173 -30.48647 -27.99566 -24.43925 -23.19870 -22.86567 -19.64059 -18.66521 -18.47603 -17.73796 -17.67795 -16.39487 -15.83265 -15.73558 -15.40351 -15.34269 -15.05404 -14.97317 -14.52292 -14.10276 -13.22597 -13.13830 -12.88549 -12.54841 -12.27183 -12.12379 -12.08227 -11.78725 -11.23156 -10.63304 -10.02581 -10.01554 -9.63143 -9.04919 -8.99857 -8.60239 -8.24931 -6.35196 -3.87705 0.58024 0.66215 2.87546 2.99803 3.04350 3.12694 3.34200 3.60683 3.66094 4.06600 4.15945 4.38532 4.53023 4.68883 4.78475 5.13861 5.18671 5.34390 5.48342 5.56744 5.61543 5.71086 5.73767 5.82223 6.28613 7.27371 7.53213 8.05708 8.53030 8.88544 9.34374 9.71714 10.77398 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.032525 B = 0.004927 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.674532 B = 5681.068463 C = 5805.914761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.044 3.956 3 Si 0.880 3.120 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.122 0.878 9 N -0.582 5.582 10 C 0.452 3.548 11 O -0.553 6.553 12 C 0.053 3.947 13 O -0.289 6.289 14 C 0.031 3.969 15 C 0.113 3.887 16 F -0.120 7.120 17 C -0.156 4.156 18 C -0.070 4.070 19 C -0.156 4.156 20 C 0.113 3.887 21 F -0.120 7.120 22 H 0.275 0.725 23 H 0.372 0.628 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.146 0.854 27 H 0.146 0.854 28 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.252 -2.885 -0.028 23.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.160 4.160 3 Si 0.706 3.294 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.195 1.195 7 C -0.435 4.435 8 H 0.139 0.861 9 N -0.222 5.222 10 C 0.237 3.763 11 O -0.434 6.434 12 C -0.025 4.025 13 O -0.204 6.204 14 C -0.015 4.015 15 C 0.093 3.907 16 F -0.098 7.098 17 C -0.175 4.175 18 C -0.088 4.088 19 C -0.175 4.175 20 C 0.093 3.907 21 F -0.098 7.098 22 H 0.085 0.915 23 H 0.205 0.795 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.164 0.836 27 H 0.164 0.836 28 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 22.402 -3.612 -0.027 22.691 hybrid contribution 0.434 1.605 0.018 1.663 sum 22.835 -2.006 -0.010 22.923 Atomic orbital electron populations 1.69616 1.05625 1.27652 1.48727 1.25031 0.95515 0.97994 0.97427 0.86672 0.79816 0.83944 0.78999 1.19460 1.19982 1.19454 1.19431 0.78718 0.96872 1.48445 0.86051 1.42023 1.07598 1.05615 1.67008 1.19142 0.86869 0.85090 0.85168 1.90611 1.68982 1.30772 1.53038 1.22591 0.95970 0.82076 1.01829 1.86287 1.14076 1.26224 1.93835 1.18842 0.85633 1.06375 0.90689 1.17899 0.90162 1.01787 0.80872 1.91570 1.80715 1.93063 1.44432 1.21188 0.91633 1.04131 1.00526 1.20865 1.00556 0.97023 0.90368 1.21187 0.91641 1.04120 1.00531 1.17896 0.90141 1.01802 0.80878 1.91570 1.80614 1.93109 1.44482 0.91453 0.79522 0.90849 0.90840 0.83577 0.83646 0.83575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.64 13.96 55.50 0.77 -24.86 15 2 C 0.04 1.21 5.50 -17.47 -0.10 1.11 15 3 Si 0.88 19.29 27.74 -169.99 -4.71 14.57 15 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 5 H -0.27 -6.02 7.11 56.52 0.40 -5.61 15 6 H -0.27 -5.36 6.52 56.52 0.37 -4.99 15 7 C -0.31 -8.80 10.16 -14.93 -0.15 -8.95 15 8 H 0.12 3.98 7.39 -52.49 -0.39 3.59 15 9 N -0.58 -14.26 5.09 -10.96 -0.06 -14.32 15 10 C 0.45 11.03 7.86 -10.99 -0.09 10.94 15 11 O -0.55 -16.13 16.08 -14.37 -0.23 -16.36 15 12 C 0.05 0.99 6.54 36.00 0.24 1.23 15 13 O -0.29 -5.68 9.32 -39.69 -0.37 -6.05 15 14 C 0.03 0.48 5.74 -39.14 -0.22 0.25 15 15 C 0.11 1.47 7.31 -39.31 -0.29 1.18 15 16 F -0.12 -1.78 17.11 2.25 0.04 -1.75 15 17 C -0.16 -1.37 10.02 -39.52 -0.40 -1.77 15 18 C -0.07 -0.49 10.04 -39.57 -0.40 -0.89 15 19 C -0.16 -1.37 10.02 -39.52 -0.40 -1.76 15 20 C 0.11 1.47 7.31 -39.31 -0.29 1.18 15 21 F -0.12 -1.78 17.11 2.25 0.04 -1.74 15 22 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 23 H 0.37 7.85 5.76 -40.82 -0.24 7.61 15 24 H 0.07 1.17 8.14 -51.93 -0.42 0.75 15 25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 26 H 0.15 0.90 8.06 -52.49 -0.42 0.48 15 27 H 0.15 0.50 8.06 -52.49 -0.42 0.08 15 28 H 0.15 0.90 8.06 -52.49 -0.42 0.48 15 LS Contribution 269.55 15.07 4.06 4.06 Total: -1.00 -34.66 269.55 -4.45 -39.11 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -1.90 Total: 4.81 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -2.09 Total: 2.53 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.72 Total: -39.18 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.60 Total: -22.41 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.08 Total: -3.49 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -34.66 -4.45 -39.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108660708.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.623 kcal (2) G-P(sol) polarization free energy of solvation -34.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds