Wall clock time and date at job start Mon Mar 30 2020 00:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35941 * 116.99851 * 2 1 4 4 C 1.38517 * 120.06527 * 0.02562 * 3 2 1 5 5 C 1.38420 * 120.03004 * 180.02562 * 4 3 2 6 6 F 1.35097 * 119.92527 * 179.97438 * 5 4 3 7 7 C 1.38899 * 120.15385 * 359.97170 * 5 4 3 8 8 F 1.35109 * 119.93143 * 180.02562 * 7 5 4 9 9 C 1.38187 * 120.13026 * 0.02638 * 7 5 4 10 10 C 1.38986 * 119.97201 * 359.70117 * 9 7 5 11 11 N 1.39505 * 120.08028 * 180.27776 * 10 9 7 12 12 C 1.34772 * 119.99981 * 24.84868 * 11 10 9 13 13 O 1.21798 * 120.00405 * 5.53127 * 12 11 10 14 14 C 1.41688 * 119.99972 * 185.52682 * 12 11 10 15 15 H 1.08004 * 120.00308 * 0.02562 * 14 12 11 16 16 C 1.40142 * 120.00265 * 180.02562 * 14 12 11 17 17 N 1.30624 * 119.99882 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 120.00286 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47180 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47321 * 120.00155 * 18 16 14 21 21 H 1.48506 * 109.47487 * 240.00304 * 18 16 14 22 22 H 1.09003 * 109.47122 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47172 * 60.00093 * 1 2 3 24 24 H 1.09000 * 109.47063 * 299.99827 * 1 2 3 25 25 H 1.08002 * 119.98479 * 359.97438 * 4 3 2 26 26 H 1.08002 * 120.01339 * 179.97438 * 9 7 5 27 27 H 0.96998 * 120.00182 * 204.85219 * 11 10 9 28 28 H 0.97004 * 120.00142 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2930 2.3738 0.0005 5 6 1.9222 3.6068 0.0000 6 9 1.1856 4.7393 0.0000 7 6 3.3091 3.6824 -0.0005 8 9 3.9185 4.8882 -0.0005 9 6 4.0668 2.5267 -0.0010 10 6 3.4406 1.2859 0.0053 11 7 4.2033 0.1178 0.0106 12 6 5.4587 0.1350 0.5005 13 8 5.8922 1.1427 1.0300 14 6 6.2744 -1.0191 0.3998 15 1 5.8903 -1.9126 -0.0700 16 6 7.5797 -1.0015 0.9097 17 7 8.0442 0.0789 1.4783 18 14 8.6553 -2.5229 0.7762 19 1 7.8998 -3.6050 0.0954 20 1 9.8741 -2.2002 -0.0084 21 1 9.0468 -2.9733 2.1360 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 0.2144 2.3182 0.0005 26 1 5.1451 2.5877 -0.0018 27 1 3.8302 -0.7067 -0.3383 28 1 8.9478 0.0912 1.8309 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336312607.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:28 Heat of formation + Delta-G solvation = -135.531528 kcal Electronic energy + Delta-G solvation = -18717.359607 eV Core-core repulsion = 15177.106702 eV Total energy + Delta-G solvation = -3540.252905 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.065 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.95185 -48.02216 -40.05541 -38.05561 -36.31868 -33.54392 -32.51395 -29.82635 -29.01436 -27.20279 -26.29193 -22.85334 -22.05728 -20.19812 -18.32114 -18.01798 -17.10612 -16.63386 -16.01587 -15.97826 -15.55687 -15.38547 -14.78263 -14.47423 -14.26707 -14.21134 -13.75541 -13.15136 -12.88763 -12.58033 -12.39606 -11.96355 -11.58123 -11.36014 -11.19906 -11.15934 -10.72506 -10.57739 -10.36499 -9.50248 -8.99618 -8.29228 -7.78408 -6.99889 -6.46738 -5.00136 1.43957 1.47524 2.99873 3.09218 3.13776 3.34285 3.75817 3.90572 4.22532 4.34925 4.49918 4.68358 4.97440 5.10274 5.16925 5.38819 5.49029 5.59678 5.73839 6.03284 6.08853 6.36357 6.61091 7.10831 7.17154 7.36424 7.72115 7.90903 8.01824 8.71050 9.13360 10.26301 10.45163 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.026425 B = 0.006189 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.349638 B = 4523.099439 C = 5506.589664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.309 6.309 3 C 0.078 3.922 4 C -0.192 4.192 5 C 0.041 3.959 6 F -0.140 7.140 7 C 0.064 3.936 8 F -0.134 7.134 9 C -0.126 4.126 10 C 0.200 3.800 11 N -0.681 5.681 12 C 0.538 3.462 13 O -0.565 6.565 14 C -0.532 4.532 15 H 0.073 0.927 16 C 0.087 3.913 17 N -0.743 5.743 18 Si 0.915 3.085 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.273 1.273 22 H 0.098 0.902 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.143 0.857 26 H 0.181 0.819 27 H 0.401 0.599 28 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.414 -0.586 -3.634 11.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.222 6.222 3 C 0.029 3.971 4 C -0.212 4.212 5 C 0.019 3.981 6 F -0.119 7.119 7 C 0.043 3.957 8 F -0.113 7.113 9 C -0.149 4.149 10 C 0.097 3.903 11 N -0.322 5.322 12 C 0.349 3.651 13 O -0.449 6.449 14 C -0.566 4.566 15 H 0.092 0.908 16 C -0.137 4.137 17 N -0.370 5.370 18 Si 0.739 3.261 19 H -0.185 1.185 20 H -0.198 1.198 21 H -0.199 1.199 22 H 0.117 0.883 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.160 0.840 26 H 0.198 0.802 27 H 0.235 0.765 28 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.751 0.008 -3.155 11.204 hybrid contribution -0.086 -0.558 -0.153 0.585 sum -10.837 -0.550 -3.308 11.344 Atomic orbital electron populations 1.23023 0.78743 1.03735 1.01148 1.86055 1.20961 1.25811 1.89420 1.18471 0.90467 0.84289 1.03846 1.20596 1.00360 0.89928 1.10326 1.17135 0.87224 0.82431 1.11284 1.91443 1.76750 1.48990 1.94685 1.17459 0.88503 0.81680 1.08070 1.91474 1.83276 1.42226 1.94311 1.21444 1.03474 0.87930 1.02018 1.17116 0.86393 0.88948 0.97793 1.44136 1.16255 1.08446 1.63404 1.17127 0.78592 0.90357 0.79036 1.90615 1.71676 1.34942 1.47663 1.20071 0.97958 0.99036 1.39585 0.90834 1.25783 0.98072 0.97008 0.92809 1.70004 1.15644 1.26881 1.24488 0.86187 0.79725 0.81445 0.78757 1.18474 1.19841 1.19873 0.88326 0.92850 0.92790 0.83958 0.80171 0.76469 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 15 2 O -0.31 -4.65 9.91 -19.55 -0.19 -4.85 15 3 C 0.08 1.33 6.71 -38.95 -0.26 1.07 15 4 C -0.19 -2.98 9.01 -39.41 -0.36 -3.33 15 5 C 0.04 0.72 7.31 -39.27 -0.29 0.43 15 6 F -0.14 -2.38 17.18 2.25 0.04 -2.34 15 7 C 0.06 1.25 7.30 -39.36 -0.29 0.97 15 8 F -0.13 -2.67 17.18 2.25 0.04 -2.64 15 9 C -0.13 -2.72 8.68 -39.32 -0.34 -3.06 15 10 C 0.20 4.12 6.45 -83.56 -0.54 3.58 15 11 N -0.68 -15.01 5.26 -12.32 -0.06 -15.08 15 12 C 0.54 14.41 7.37 -14.94 -0.11 14.30 15 13 O -0.56 -16.92 12.03 5.10 0.06 -16.86 15 14 C -0.53 -13.96 9.31 -37.55 -0.35 -14.31 15 15 H 0.07 1.75 7.85 -52.48 -0.41 1.34 15 16 C 0.09 2.25 5.50 -17.35 -0.10 2.16 15 17 N -0.74 -20.75 11.73 55.56 0.65 -20.10 15 18 Si 0.91 18.73 29.56 -169.99 -5.02 13.71 15 19 H -0.26 -5.16 7.11 56.52 0.40 -4.76 15 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 15 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 15 22 H 0.10 0.75 8.14 -51.93 -0.42 0.33 15 23 H 0.05 0.46 7.66 -51.93 -0.40 0.06 15 24 H 0.05 0.49 7.66 -51.93 -0.40 0.09 15 25 H 0.14 1.72 6.29 -52.49 -0.33 1.39 15 26 H 0.18 4.43 5.78 -52.49 -0.30 4.12 15 27 H 0.40 7.77 8.29 -40.82 -0.34 7.44 15 28 H 0.27 6.89 8.29 -40.82 -0.34 6.55 15 LS Contribution 261.57 15.07 3.94 3.94 Total: -1.00 -30.84 261.57 -3.92 -34.77 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -1.74 Total: 6.36 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -1.63 Total: 3.08 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.59 Total: -35.17 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.13 Total: -21.70 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.08 Total: -4.98 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.71 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.84 -3.92 -34.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336312607.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.766 kcal (2) G-P(sol) polarization free energy of solvation -30.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds