Wall clock time and date at job start Sun Mar 29 2020 23:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36932 * 120.00435 * 2 1 4 4 H 1.07999 * 119.99942 * 202.06544 * 3 2 1 5 5 C 1.38812 * 119.99956 * 22.06234 * 3 2 1 6 6 N 1.31613 * 119.99817 * 11.27269 * 5 3 2 7 7 Si 1.86803 * 120.00046 * 191.26418 * 5 3 2 8 8 H 1.48498 * 109.46907 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.46868 * 120.00524 * 7 5 3 10 10 H 1.48503 * 109.47109 * 240.00419 * 7 5 3 11 11 C 1.46499 * 119.99621 * 180.02562 * 2 1 3 12 12 C 1.50698 * 109.47100 * 269.99728 * 11 2 1 13 13 C 1.38168 * 120.03020 * 260.02102 * 12 11 2 14 14 C 1.38241 * 120.05635 * 179.97438 * 13 12 11 15 15 C 1.38283 * 120.11455 * 0.02562 * 14 13 12 16 16 C 1.38125 * 120.05710 * 0.02562 * 15 14 13 17 17 C 1.38714 * 120.02721 * 79.99676 * 12 11 2 18 18 O 1.35899 * 120.05611 * 0.02562 * 17 12 11 19 19 C 1.42905 * 117.00023 * 180.02562 * 18 17 12 20 20 F 1.39900 * 109.47097 * 300.00115 * 19 18 17 21 21 F 1.39902 * 109.46866 * 59.99986 * 19 18 17 22 22 H 1.09000 * 109.46633 * 274.63095 * 1 2 3 23 23 H 1.09004 * 109.46760 * 34.62293 * 1 2 3 24 24 H 1.08999 * 109.47639 * 154.62499 * 1 2 3 25 25 H 0.97005 * 120.00517 * 179.97438 * 6 5 3 26 26 H 1.08995 * 109.47533 * 149.99472 * 11 2 1 27 27 H 1.09000 * 109.47352 * 29.99679 * 11 2 1 28 28 H 1.08001 * 119.96618 * 0.02562 * 13 12 11 29 29 H 1.08005 * 119.94240 * 180.02562 * 14 13 12 30 30 H 1.07997 * 119.97396 * 180.27363 * 15 14 13 31 31 H 1.07996 * 120.03518 * 180.02562 * 16 15 14 32 32 H 1.08993 * 109.46887 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1704 1.2200 -0.3514 5 6 1.5320 2.3440 0.4515 6 7 0.3790 2.2718 1.0820 7 14 2.3374 4.0049 0.1645 8 1 3.6184 3.8149 -0.5621 9 1 1.4323 4.8607 -0.6439 10 1 2.6013 4.6594 1.4712 11 6 2.1974 -1.2688 -0.0006 12 6 2.4486 -1.7044 1.4200 13 6 3.6819 -1.4845 2.0029 14 6 3.9127 -1.8835 3.3062 15 6 2.9108 -2.5038 4.0297 16 6 1.6765 -2.7269 3.4513 17 6 1.4417 -2.3261 2.1438 18 8 0.2278 -2.5435 1.5728 19 6 -0.7616 -3.1882 2.3775 20 9 -0.2975 -4.4495 2.7658 21 9 -1.0145 -2.4138 3.5149 22 1 -0.3632 0.0830 1.0243 23 1 -0.3633 0.8457 -0.5839 24 1 -0.3634 -0.9285 -0.4404 25 1 -0.0526 3.0811 1.3980 26 1 3.1498 -1.1384 -0.5144 27 1 1.6083 -2.0282 -0.5147 28 1 4.4659 -0.9998 1.4400 29 1 4.8773 -1.7103 3.7602 30 1 3.0922 -2.8106 5.0492 31 1 0.8941 -3.2111 4.0168 32 1 -1.6806 -3.3008 1.8024 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075828607.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:23 Heat of formation + Delta-G solvation = -92.987524 kcal Electronic energy + Delta-G solvation = -19815.076942 eV Core-core repulsion = 16412.501978 eV Total energy + Delta-G solvation = -3402.574964 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.097 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.10129 -47.08819 -39.55974 -36.94563 -35.40728 -31.96651 -30.11140 -29.66698 -26.19340 -25.69189 -25.40442 -22.13804 -21.82210 -20.34966 -18.48278 -17.72432 -17.64764 -16.64625 -15.73826 -15.44461 -14.79226 -14.45000 -14.24864 -13.78387 -13.56121 -13.44839 -13.25311 -12.97263 -12.92191 -12.57518 -12.24247 -11.78412 -11.45284 -11.19326 -10.96761 -10.84453 -10.56379 -10.40042 -10.16580 -9.92700 -9.85056 -8.52612 -8.30756 -7.79821 -6.72948 -5.69433 -3.13323 1.87529 1.91761 2.98491 3.39033 3.45748 3.47844 3.71131 4.24219 4.54260 4.54396 4.90871 5.25571 5.30979 5.45486 5.54696 5.79688 5.81877 5.90207 6.11163 6.26148 6.50313 6.65520 6.79373 6.88706 6.91883 7.05640 7.26380 7.46419 7.64742 7.80538 7.87872 8.41897 9.26556 9.89170 10.38937 11.34763 Molecular weight = 257.10amu Principal moments of inertia in cm(-1) A = 0.023438 B = 0.007648 C = 0.006708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.377891 B = 3659.994243 C = 4172.910225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.171 3.829 2 N -0.589 5.589 3 C -0.251 4.251 4 H 0.070 0.930 5 C 0.002 3.998 6 N -0.903 5.903 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.186 3.814 12 C -0.091 4.091 13 C -0.080 4.080 14 C -0.147 4.147 15 C -0.107 4.107 16 C -0.194 4.194 17 C 0.112 3.888 18 O -0.305 6.305 19 C 0.409 3.591 20 F -0.208 7.208 21 F -0.199 7.199 22 H 0.027 0.973 23 H 0.041 0.959 24 H -0.001 1.001 25 H 0.251 0.749 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.125 0.875 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.123 0.877 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.099 -11.687 2.659 11.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.309 5.309 3 C -0.381 4.381 4 H 0.088 0.912 5 C -0.197 4.197 6 N -0.548 5.548 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.218 1.218 11 C 0.059 3.941 12 C -0.095 4.095 13 C -0.099 4.099 14 C -0.165 4.165 15 C -0.126 4.126 16 C -0.213 4.213 17 C 0.068 3.932 18 O -0.222 6.222 19 C 0.318 3.682 20 F -0.190 7.190 21 F -0.181 7.181 22 H 0.046 0.954 23 H 0.060 0.940 24 H 0.018 0.982 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.143 0.857 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.140 0.860 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.103 -11.474 2.515 11.747 hybrid contribution 0.251 0.975 0.654 1.201 sum 0.148 -10.499 3.169 10.968 Atomic orbital electron populations 1.20762 0.82075 0.95233 0.99270 1.44125 1.02131 1.00130 1.84524 1.19287 0.98045 0.85082 1.35673 0.91213 1.25064 0.97683 0.98554 0.98377 1.70096 1.17488 1.26843 1.40359 0.86188 0.78701 0.84323 0.77380 1.20267 1.21635 1.21782 1.19866 0.96572 0.88727 0.88935 1.20615 0.91090 0.96327 1.01502 1.20841 0.96157 0.98097 0.94837 1.21009 0.99127 1.01303 0.95067 1.20692 0.92840 0.99845 0.99187 1.21348 0.99428 1.06078 0.94410 1.18625 0.84162 0.98284 0.92106 1.86694 1.20974 1.74273 1.40296 1.23299 0.92075 0.72719 0.80103 1.93057 1.90621 1.43131 1.92149 1.93095 1.94355 1.75660 1.55004 0.95421 0.94000 0.98240 0.93835 0.92756 0.93121 0.85688 0.86597 0.86589 0.85957 0.80924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.31 7.95 59.85 0.48 4.79 16 2 N -0.59 -15.06 2.91 -182.50 -0.53 -15.59 16 3 C -0.25 -6.94 9.68 -15.06 -0.15 -7.08 16 4 H 0.07 1.87 7.84 -52.49 -0.41 1.46 16 5 C 0.00 0.05 5.13 -17.43 -0.09 -0.04 16 6 N -0.90 -26.81 10.56 55.49 0.59 -26.23 16 7 Si 0.90 22.09 29.57 -169.99 -5.03 17.07 16 8 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 11 C 0.19 3.98 5.50 -5.20 -0.03 3.95 16 12 C -0.09 -1.88 5.48 -104.47 -0.57 -2.45 16 13 C -0.08 -1.51 9.67 -39.61 -0.38 -1.89 16 14 C -0.15 -2.47 10.04 -39.56 -0.40 -2.86 16 15 C -0.11 -1.79 10.04 -39.61 -0.40 -2.19 16 16 C -0.19 -3.53 8.26 -39.43 -0.33 -3.85 16 17 C 0.11 2.22 6.46 -39.21 -0.25 1.97 16 18 O -0.31 -5.59 8.41 -19.42 -0.16 -5.75 16 19 C 0.41 5.76 5.98 101.05 0.60 6.36 16 20 F -0.21 -2.91 15.58 2.25 0.04 -2.88 16 21 F -0.20 -3.26 15.59 2.25 0.04 -3.23 16 22 H 0.03 0.76 7.40 -51.93 -0.38 0.38 16 23 H 0.04 1.13 7.19 -51.93 -0.37 0.75 16 24 H 0.00 -0.02 7.66 -51.93 -0.40 -0.42 16 25 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.05 1.09 7.89 -51.93 -0.41 0.68 16 27 H 0.05 1.01 7.57 -51.93 -0.39 0.61 16 28 H 0.13 2.17 8.04 -52.49 -0.42 1.75 16 29 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 30 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.12 2.07 5.10 -52.49 -0.27 1.81 16 32 H 0.17 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 279.39 15.07 4.21 4.21 Total: -1.00 -32.10 279.39 -5.83 -37.93 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -3.46 Total: -2.23 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -1.51 Total: -3.30 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.06 Total: -41.82 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.16 Total: -5.75 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 0.07 Total: -6.10 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.10 -5.83 -37.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075828607.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.059 kcal (2) G-P(sol) polarization free energy of solvation -32.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds