Wall clock time and date at job start Sun Mar 29 2020 23:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35562 * 117.00168 * 2 1 4 4 N 1.32183 * 119.77712 * 0.31031 * 3 2 1 5 5 C 1.31938 * 121.78205 * 180.31962 * 4 3 2 6 6 C 1.38245 * 121.12042 * 359.64615 * 5 4 3 7 7 C 1.38496 * 119.42304 * 0.02795 * 6 5 4 8 8 C 1.39676 * 118.36694 * 359.97438 * 7 6 5 9 9 C 1.48161 * 120.56899 * 180.02562 * 8 7 6 10 10 C 1.40117 * 119.99312 * 313.01189 * 9 8 7 11 11 N 1.32156 * 120.28765 * 180.02562 * 10 9 8 12 12 C 1.31895 * 120.29066 * 359.97438 * 11 10 9 13 13 C 1.40807 * 119.98373 * 0.02562 * 12 11 10 14 14 C 1.41314 * 120.14738 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99736 * 353.54583 * 14 13 12 16 16 C 1.40042 * 120.00619 * 173.54540 * 14 13 12 17 17 N 1.30739 * 119.99381 * 6.08766 * 16 14 13 18 18 Si 1.86795 * 120.00428 * 186.08559 * 16 14 13 19 19 H 1.48501 * 109.47044 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47072 * 120.00205 * 18 16 14 21 21 H 1.48503 * 109.47245 * 239.99918 * 18 16 14 22 22 N 1.32560 * 119.99261 * 133.02896 * 9 8 7 23 23 H 1.08996 * 109.47635 * 300.00580 * 1 2 3 24 24 H 1.08997 * 109.46687 * 60.00568 * 1 2 3 25 25 H 1.09000 * 109.47198 * 179.97438 * 1 2 3 26 26 H 1.07999 * 119.44379 * 179.67742 * 5 4 3 27 27 H 1.07994 * 120.29134 * 180.02562 * 6 5 4 28 28 H 1.07997 * 120.81621 * 180.02562 * 7 6 5 29 29 H 1.08004 * 119.85765 * 359.97438 * 10 9 8 30 30 H 1.08001 * 120.00535 * 180.02562 * 12 11 10 31 31 H 0.97001 * 119.99630 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2078 0.0000 4 7 1.3203 2.3136 0.0062 5 6 1.8778 3.5094 0.0002 6 6 3.2523 3.6569 -0.0056 7 6 4.0575 2.5301 -0.0057 8 6 3.4434 1.2756 0.0007 9 6 4.2578 0.0379 0.0014 10 6 5.3309 -0.0950 -0.8897 11 7 6.0609 -1.1966 -0.8944 12 6 5.7860 -2.1804 -0.0599 13 6 4.7103 -2.0594 0.8406 14 6 4.4124 -3.1114 1.7358 15 1 4.9414 -4.0501 1.6610 16 6 3.4314 -2.9370 2.7199 17 7 2.7088 -1.8477 2.7365 18 14 3.1555 -4.2607 4.0087 19 1 4.0958 -5.3855 3.7723 20 1 3.3932 -3.6930 5.3601 21 1 1.7582 -4.7557 3.9186 22 7 3.9709 -0.9436 0.8449 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.2497 4.3880 0.0003 27 1 3.6944 4.6422 -0.0101 28 1 5.1338 2.6192 -0.0098 29 1 5.5620 0.7060 -1.5764 30 1 6.3858 -3.0784 -0.0674 31 1 2.0290 -1.7270 3.4178 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239856447.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:39 Heat of formation + Delta-G solvation = 42.808933 kcal Electronic energy + Delta-G solvation = -18519.684998 eV Core-core repulsion = 15573.687796 eV Total energy + Delta-G solvation = -2945.997201 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.14505 -38.68937 -37.24088 -34.06775 -33.09279 -31.64467 -30.68883 -29.05861 -26.81149 -25.96042 -23.91613 -22.67602 -21.82982 -20.97149 -17.84432 -17.57992 -16.61521 -15.89592 -15.41476 -15.19334 -15.13806 -14.76021 -14.27978 -13.59435 -13.22092 -13.02622 -12.74581 -12.69980 -11.98795 -11.55268 -11.42144 -11.38317 -11.19397 -10.74823 -10.68610 -10.33392 -9.84679 -9.68143 -9.53017 -9.30912 -8.93657 -8.16690 -7.52239 -7.35268 -6.48328 -4.67703 1.39425 1.72838 2.55014 2.96320 3.02594 3.06827 3.18576 3.70761 3.84694 4.21873 4.64515 4.68494 5.18435 5.27174 5.41114 5.62608 5.71357 5.76730 5.78144 5.89318 6.01355 6.04489 6.26911 6.38757 6.43800 6.68187 6.79889 6.92385 7.05431 7.13702 7.62507 7.85823 8.03085 8.27912 8.41702 8.65415 9.23157 9.82330 10.13961 Molecular weight = 257.09amu Principal moments of inertia in cm(-1) A = 0.019906 B = 0.008176 C = 0.006477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.284220 B = 3423.852890 C = 4321.990254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.263 6.263 3 C 0.351 3.649 4 N -0.550 5.550 5 C 0.127 3.873 6 C -0.220 4.220 7 C -0.035 4.035 8 C -0.077 4.077 9 C 0.145 3.855 10 C -0.108 4.108 11 N -0.429 5.429 12 C -0.066 4.066 13 C 0.206 3.794 14 C -0.411 4.411 15 H 0.091 0.909 16 C 0.065 3.935 17 N -0.697 5.697 18 Si 0.909 3.091 19 H -0.258 1.258 20 H -0.272 1.272 21 H -0.272 1.272 22 N -0.422 5.422 23 H 0.053 0.947 24 H 0.048 0.952 25 H 0.089 0.911 26 H 0.152 0.848 27 H 0.132 0.868 28 H 0.138 0.862 29 H 0.125 0.875 30 H 0.133 0.867 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.780 6.597 -1.289 7.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.167 6.167 3 C 0.170 3.830 4 N -0.275 5.275 5 C -0.029 4.029 6 C -0.241 4.241 7 C -0.061 4.061 8 C -0.082 4.082 9 C -0.005 4.005 10 C -0.267 4.267 11 N -0.140 5.140 12 C -0.236 4.236 13 C 0.079 3.921 14 C -0.442 4.442 15 H 0.109 0.891 16 C -0.163 4.163 17 N -0.317 5.317 18 Si 0.733 3.267 19 H -0.182 1.182 20 H -0.198 1.198 21 H -0.197 1.197 22 N -0.139 5.139 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.107 0.893 26 H 0.169 0.831 27 H 0.150 0.850 28 H 0.156 0.844 29 H 0.142 0.858 30 H 0.151 0.849 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.779 6.306 -1.156 7.996 hybrid contribution 0.443 -0.277 0.641 0.827 sum -4.336 6.029 -0.515 7.444 Atomic orbital electron populations 1.22736 0.78901 1.02364 1.01179 1.86576 1.21066 1.23000 1.86028 1.19919 0.88707 0.84584 0.89750 1.67306 1.40871 0.98766 1.20547 1.22268 0.92798 0.93536 0.94305 1.21749 0.94782 0.99202 1.08330 1.21447 1.00478 0.90277 0.93878 1.18658 0.90219 0.93601 1.05697 1.20295 0.92810 0.92990 0.94365 1.22438 0.99749 0.98517 1.05967 1.67644 1.26267 1.00276 1.19853 1.23184 1.01766 0.98791 0.99815 1.19405 0.89173 0.91640 0.91854 1.19644 1.15866 0.98844 1.09872 0.89114 1.26140 0.94962 0.96436 0.98716 1.70150 1.11708 1.22789 1.27064 0.86234 0.79175 0.81169 0.80126 1.18170 1.19757 1.19747 1.69718 1.25495 0.99277 1.19405 0.92810 0.93370 0.89253 0.83113 0.85009 0.84397 0.85762 0.84945 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.38 101.05 1.05 1.80 16 2 O -0.26 -5.86 9.41 -18.38 -0.17 -6.03 16 3 C 0.35 7.42 7.48 -16.72 -0.13 7.29 16 4 N -0.55 -10.05 9.21 -13.04 -0.12 -10.17 16 5 C 0.13 1.87 11.17 -17.50 -0.20 1.67 16 6 C -0.22 -3.10 10.09 -39.48 -0.40 -3.50 16 7 C -0.03 -0.59 9.59 -38.95 -0.37 -0.96 16 8 C -0.08 -1.65 5.65 -104.60 -0.59 -2.24 16 9 C 0.14 3.58 6.10 -82.77 -0.50 3.07 16 10 C -0.11 -2.57 10.68 -16.71 -0.18 -2.75 16 11 N -0.43 -10.78 10.47 -12.04 -0.13 -10.90 16 12 C -0.07 -1.67 10.97 -16.55 -0.18 -1.85 16 13 C 0.21 5.58 6.54 -84.84 -0.55 5.03 16 14 C -0.41 -10.60 9.15 -37.74 -0.35 -10.94 16 15 H 0.09 2.15 7.85 -52.48 -0.41 1.74 16 16 C 0.06 1.59 5.49 -17.34 -0.10 1.49 16 17 N -0.70 -18.01 11.51 55.55 0.64 -17.37 16 18 Si 0.91 17.95 29.56 -169.99 -5.03 12.93 16 19 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 20 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 22 N -0.42 -11.53 7.32 -7.52 -0.06 -11.58 16 23 H 0.05 0.89 8.10 -51.93 -0.42 0.47 16 24 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 25 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 26 H 0.15 1.63 8.06 -52.49 -0.42 1.20 16 27 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 28 H 0.14 2.10 8.03 -52.49 -0.42 1.67 16 29 H 0.12 2.59 7.99 -52.48 -0.42 2.17 16 30 H 0.13 3.03 8.06 -52.49 -0.42 2.61 16 31 H 0.27 6.46 8.29 -40.82 -0.34 6.13 16 LS Contribution 282.78 15.07 4.26 4.26 Total: -1.00 -30.94 282.78 -6.01 -36.95 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -2.92 Total: 3.80 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -2.49 Total: -1.89 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: 0.34 Total: -50.02 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.17 Total: -6.03 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.94 -6.01 -36.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239856447.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.760 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds