Wall clock time and date at job start Sun Mar 29 2020 23:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31593 * 1 3 3 Si 1.86805 * 119.99642 * 2 1 4 4 H 1.48502 * 109.46766 * 274.98116 * 3 2 1 5 5 H 1.48492 * 109.47142 * 34.97878 * 3 2 1 6 6 H 1.48497 * 109.47133 * 154.98356 * 3 2 1 7 7 C 1.38789 * 120.00378 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00049 * 187.10494 * 7 2 1 9 9 N 1.36853 * 119.99555 * 7.10709 * 7 2 1 10 10 C 1.46528 * 124.92667 * 354.22405 * 9 7 2 11 11 C 1.53760 * 105.24831 * 179.97438 * 10 9 7 12 12 C 1.51426 * 104.35405 * 0.07252 * 11 10 9 13 13 C 1.38609 * 108.56930 * 359.92450 * 12 11 10 14 14 C 1.39898 * 119.05866 * 180.02562 * 13 12 11 15 15 C 1.37884 * 120.51329 * 0.02562 * 14 13 12 16 16 C 1.38101 * 120.38736 * 359.97438 * 15 14 13 17 17 C 1.39125 * 131.03173 * 179.97438 * 12 11 10 18 18 C 1.48468 * 120.03885 * 359.96355 * 17 12 11 19 19 N 1.34041 * 126.67879 * 359.63689 * 18 17 12 20 20 N 1.28985 * 107.27268 * 179.89987 * 19 18 17 21 21 N 1.28733 * 108.94037 * 0.37488 * 20 19 18 22 22 H 0.96995 * 125.33943 * 179.78613 * 21 20 19 23 23 N 1.28866 * 109.31679 * 359.76332 * 21 20 19 24 24 H 0.96998 * 120.00436 * 0.02562 * 1 2 3 25 25 H 1.09001 * 110.29955 * 298.94491 * 10 9 7 26 26 H 1.09002 * 110.30397 * 60.99678 * 10 9 7 27 27 H 1.09003 * 110.43552 * 118.79367 * 11 10 9 28 28 H 1.09007 * 110.43596 * 241.30251 * 11 10 9 29 29 H 1.07997 * 119.74052 * 179.97438 * 14 13 12 30 30 H 1.07995 * 119.80556 * 179.97438 * 15 14 13 31 31 H 1.07995 * 120.13634 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6178 0.0000 4 1 2.3920 2.1072 -1.3948 5 1 1.5039 2.6200 0.8026 6 1 3.5961 1.4122 0.5920 7 6 2.0100 -1.2019 0.0005 8 1 3.0837 -1.2054 0.1162 9 7 1.3336 -2.3826 -0.1456 10 6 -0.1252 -2.5139 -0.1894 11 6 -0.3907 -4.0182 -0.3643 12 6 0.9891 -4.6407 -0.4053 13 6 1.9319 -3.6333 -0.2737 14 6 3.2902 -3.9683 -0.2836 15 6 3.6863 -5.2816 -0.4228 16 6 2.7462 -6.2847 -0.5538 17 6 1.3894 -5.9657 -0.5455 18 6 0.3727 -7.0384 -0.6863 19 7 -0.9588 -6.8842 -0.6892 20 7 -1.4797 -8.0551 -0.8358 21 7 -0.5348 -8.9257 -0.9156 22 1 -0.6601 -9.8812 -1.0257 23 7 0.6037 -8.3286 -0.8268 24 1 -0.4851 0.8400 -0.0004 25 1 -0.5650 -2.1579 0.7423 26 1 -0.5298 -1.9574 -1.0348 27 1 -0.9586 -4.4054 0.4817 28 1 -0.9218 -4.2049 -1.2978 29 1 4.0342 -3.1921 -0.1823 30 1 4.7379 -5.5273 -0.4293 31 1 3.0610 -7.3120 -0.6630 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592677310.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:23:14 Heat of formation + Delta-G solvation = 166.388619 kcal Electronic energy + Delta-G solvation = -18292.416629 eV Core-core repulsion = 15384.070996 eV Total energy + Delta-G solvation = -2908.345633 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.097 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.07715 -39.34489 -35.95416 -34.02733 -33.02925 -32.84439 -30.77189 -28.46762 -28.01050 -25.04521 -24.10245 -23.68552 -21.51965 -20.40505 -20.22061 -18.85081 -17.29415 -16.78972 -15.78191 -14.84193 -14.80743 -14.51158 -14.21424 -13.75251 -13.37265 -12.84098 -12.19953 -11.88518 -11.79623 -11.63515 -11.60701 -11.05516 -11.00004 -10.92779 -10.87771 -10.50653 -10.44085 -10.39455 -10.17116 -10.05739 -9.35383 -8.75443 -7.75773 -6.64662 -6.50688 -3.70544 1.26500 1.74739 2.51164 2.52903 3.01968 3.13852 3.17272 3.19179 3.96106 4.21917 4.64681 4.66772 4.87065 5.08314 5.62912 5.78427 5.84056 5.92856 5.98939 6.28944 6.31897 6.47193 6.52461 6.63350 6.84099 6.96979 7.17036 7.22627 7.27277 7.33657 7.46875 7.49559 7.64254 7.98615 8.51176 8.52576 9.12548 9.60515 10.54501 Molecular weight = 257.10amu Principal moments of inertia in cm(-1) A = 0.036644 B = 0.005668 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.925874 B = 4938.870644 C = 5677.802724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.290 4.290 8 H 0.102 0.898 9 N -0.433 5.433 10 C 0.144 3.856 11 C -0.081 4.081 12 C -0.165 4.165 13 C 0.186 3.814 14 C -0.200 4.200 15 C -0.064 4.064 16 C -0.211 4.211 17 C 0.037 3.963 18 C 0.240 3.760 19 N -0.264 5.264 20 N -0.066 5.066 21 N -0.240 5.240 22 H 0.469 0.531 23 N -0.305 5.305 24 H 0.272 0.728 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.516 -11.000 -1.243 11.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.180 4.180 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.418 4.418 8 H 0.120 0.880 9 N -0.115 5.115 10 C 0.021 3.979 11 C -0.119 4.119 12 C -0.174 4.174 13 C 0.065 3.935 14 C -0.226 4.226 15 C -0.083 4.083 16 C -0.236 4.236 17 C 0.033 3.967 18 C -0.039 4.039 19 N -0.137 5.137 20 N -0.061 5.061 21 N -0.085 5.085 22 H 0.322 0.678 23 N -0.156 5.156 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.431 -10.598 -1.218 10.677 hybrid contribution 0.686 0.372 -0.036 0.781 sum 0.255 -10.226 -1.254 10.306 Atomic orbital electron populations 1.70028 1.05804 1.27873 1.47723 1.25316 0.95869 0.99775 0.97019 0.85770 0.79164 0.80571 0.78441 1.20219 1.20687 1.19310 1.19586 0.92923 0.81920 1.47324 0.88042 1.43023 1.04696 1.02285 1.61518 1.21844 0.81076 0.91905 1.03090 1.21207 0.93880 0.95083 1.01745 1.19542 0.95385 0.91237 1.11231 1.18164 0.92506 0.85698 0.97159 1.20088 0.93083 0.96029 1.13422 1.20322 0.97794 0.91965 0.98244 1.20166 0.90531 0.98549 1.14306 1.16331 0.89180 0.86646 1.04553 1.24105 0.91011 0.89642 0.99113 1.76173 1.07112 1.12998 1.17462 1.78860 1.18100 0.93936 1.15229 1.47686 1.01197 1.12868 1.46715 0.67793 1.74952 1.09240 1.08448 1.22993 0.91786 0.91040 0.90645 0.91094 0.91077 0.87506 0.87255 0.87119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.76 10.28 55.49 0.57 -22.19 16 2 C 0.02 0.60 5.47 -17.45 -0.10 0.51 16 3 Si 0.93 19.55 29.56 -169.99 -5.02 14.52 16 4 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 7 C -0.29 -7.47 9.94 -15.11 -0.15 -7.62 16 8 H 0.10 2.51 7.19 -52.49 -0.38 2.13 16 9 N -0.43 -10.88 3.17 -112.59 -0.36 -11.24 16 10 C 0.14 3.41 5.55 -3.63 -0.02 3.39 16 11 C -0.08 -1.71 5.63 -27.13 -0.15 -1.87 16 12 C -0.17 -3.60 6.12 -103.80 -0.64 -4.24 16 13 C 0.19 4.32 6.63 -83.74 -0.56 3.76 16 14 C -0.20 -4.20 9.75 -39.09 -0.38 -4.58 16 15 C -0.06 -1.17 10.00 -39.76 -0.40 -1.57 16 16 C -0.21 -3.89 9.71 -39.21 -0.38 -4.27 16 17 C 0.04 0.75 5.87 -104.93 -0.62 0.13 16 18 C 0.24 4.40 7.93 -156.30 -1.24 3.17 16 19 N -0.26 -4.80 11.23 32.16 0.36 -4.44 16 20 N -0.07 -0.99 13.47 60.35 0.81 -0.18 16 21 N -0.24 -2.89 7.90 60.35 0.48 -2.41 16 22 H 0.47 3.04 8.96 -340.38 -3.05 -0.01 16 23 N -0.30 -4.70 12.08 32.17 0.39 -4.31 16 24 H 0.27 6.66 8.31 -40.82 -0.34 6.33 16 25 H 0.07 1.77 7.57 -51.93 -0.39 1.38 16 26 H 0.08 1.87 7.31 -51.93 -0.38 1.50 16 27 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 28 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.11 2.16 7.46 -52.49 -0.39 1.77 16 30 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.11 1.84 7.88 -52.49 -0.41 1.42 16 LS Contribution 270.67 15.07 4.08 4.08 Total: -1.00 -28.80 270.67 -8.73 -37.52 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -5.41 Total: 1.82 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -4.63 Total: -13.18 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 2.25 Total: -44.77 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.80 -8.73 -37.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677310.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.912 kcal (2) G-P(sol) polarization free energy of solvation -28.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds