Wall clock time and date at job start Sun Mar 29 2020 23:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 119.99712 * 2 1 4 4 C 1.50703 * 109.47421 * 270.00278 * 3 2 1 5 5 H 1.08000 * 119.99735 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00467 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00407 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 119.99737 * 359.97438 * 6 4 3 9 9 H 1.48507 * 109.47278 * 90.00037 * 8 6 4 10 10 H 1.48505 * 109.47418 * 210.00080 * 8 6 4 11 11 H 1.48497 * 109.47386 * 330.00209 * 8 6 4 12 12 C 1.34773 * 120.00176 * 180.02562 * 2 1 3 13 13 O 1.21284 * 120.00016 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00222 * 359.97438 * 12 2 1 15 15 C 1.53001 * 109.47101 * 179.97438 * 14 12 2 16 16 C 1.52575 * 109.23009 * 296.23564 * 15 14 12 17 17 C 1.53096 * 109.96185 * 169.00258 * 16 15 14 18 18 S 1.81754 * 108.83703 * 63.02452 * 17 16 15 19 19 C 1.81743 * 102.22021 * 306.73811 * 18 17 16 20 20 C 1.52586 * 109.22438 * 174.99981 * 15 14 12 21 21 H 1.08996 * 109.46666 * 269.99377 * 1 2 3 22 22 H 1.08998 * 109.47362 * 29.99879 * 1 2 3 23 23 H 1.09001 * 109.46877 * 150.00089 * 1 2 3 24 24 H 1.09000 * 109.47350 * 30.00059 * 3 2 1 25 25 H 1.09002 * 109.47208 * 150.00267 * 3 2 1 26 26 H 0.97007 * 119.99951 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.46984 * 60.00349 * 14 12 2 28 28 H 1.08993 * 109.46864 * 299.99778 * 14 12 2 29 29 H 1.09001 * 109.19017 * 55.62092 * 15 14 12 30 30 H 1.09002 * 109.38965 * 289.15695 * 16 15 14 31 31 H 1.09004 * 109.38998 * 48.85547 * 16 15 14 32 32 H 1.09004 * 109.57375 * 303.22188 * 17 16 15 33 33 H 1.08999 * 109.58185 * 182.83147 * 17 16 15 34 34 H 1.09003 * 109.57653 * 293.45237 * 19 18 17 35 35 H 1.09008 * 109.57539 * 173.07585 * 19 18 17 36 36 H 1.09000 * 109.38705 * 311.14580 * 20 15 14 37 37 H 1.08995 * 109.38874 * 70.84551 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1267 2.8776 -1.6728 7 7 3.3463 3.2570 -2.9127 8 14 3.7336 3.9288 -0.2529 9 1 5.1068 3.5070 0.1237 10 1 3.7495 5.3555 -0.6647 11 1 2.8272 3.7597 0.9111 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1671 -0.0010 14 6 1.3855 -2.4723 -0.0005 15 6 2.3798 -3.6351 -0.0018 16 6 3.1894 -3.6026 -1.2946 17 6 4.3648 -4.5791 -1.2000 18 16 3.7131 -6.2663 -1.0214 19 6 2.5913 -6.0972 0.3984 20 6 1.6156 -4.9498 0.1238 21 1 -0.3632 -0.0001 1.0277 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5138 24 1 1.6083 2.0284 0.5138 25 1 3.1499 1.1385 0.5138 26 1 3.8231 4.0830 -3.0899 27 1 0.7585 -2.5299 -0.8903 28 1 0.7593 -2.5302 0.8897 29 1 3.0551 -3.5301 0.8473 30 1 2.5492 -3.8868 -2.1298 31 1 3.5692 -2.5941 -1.4586 32 1 4.9772 -4.3304 -0.3332 33 1 4.9674 -4.5143 -2.1059 34 1 3.1691 -5.8783 1.2964 35 1 2.0350 -7.0244 0.5369 36 1 0.9024 -4.8768 0.9449 37 1 1.0781 -5.1460 -0.8040 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125387607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:32:08 Heat of formation + Delta-G solvation = -50.977014 kcal Electronic energy + Delta-G solvation = -17592.644572 eV Core-core repulsion = 14881.564801 eV Total energy + Delta-G solvation = -2711.079770 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.52939 -37.00001 -34.88547 -32.59932 -31.46619 -30.64730 -28.37791 -26.05496 -24.79758 -23.05508 -22.14204 -20.22727 -18.40453 -17.00151 -16.96804 -16.22522 -15.52517 -15.13586 -14.53957 -14.36602 -13.96331 -13.91615 -13.54281 -13.11491 -12.82771 -12.56014 -12.44457 -12.16152 -11.99346 -11.69223 -11.59554 -11.37910 -11.15736 -10.91712 -10.64283 -10.53470 -10.27211 -10.14801 -9.69087 -9.57046 -8.92583 -8.61467 -7.73944 -7.68716 -6.11238 -4.10201 1.78907 2.53725 3.26983 3.31295 3.33072 3.34781 3.80855 4.37183 4.59311 4.67062 4.77945 4.99414 5.08263 5.21653 5.23706 5.38440 5.40498 5.51185 5.53167 5.62112 5.65727 5.78400 5.82693 5.89308 5.99578 6.04853 6.13865 6.41524 6.54714 6.67441 6.91741 7.30861 7.58419 8.22358 8.44363 8.89950 8.96256 9.49112 11.02124 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.032257 B = 0.004951 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.808989 B = 5653.815838 C = 6090.341399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.599 5.599 3 C 0.215 3.785 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.876 3.124 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.505 3.495 13 O -0.539 6.539 14 C -0.134 4.134 15 C -0.078 4.078 16 C -0.125 4.125 17 C -0.068 4.068 18 S -0.289 6.289 19 C -0.076 4.076 20 C -0.117 4.117 21 H 0.044 0.956 22 H 0.075 0.925 23 H 0.061 0.939 24 H 0.029 0.971 25 H 0.036 0.964 26 H 0.265 0.735 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.004 -15.145 7.540 17.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.331 5.331 3 C 0.094 3.906 4 C -0.567 4.567 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.703 3.297 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.292 3.708 13 O -0.417 6.417 14 C -0.174 4.174 15 C -0.097 4.097 16 C -0.163 4.163 17 C -0.216 4.216 18 S -0.064 6.064 19 C -0.224 4.224 20 C -0.156 4.156 21 H 0.063 0.937 22 H 0.094 0.906 23 H 0.079 0.921 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.122 0.878 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.091 0.909 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.043 -15.887 6.828 18.012 hybrid contribution -0.015 1.767 1.254 2.166 sum -5.058 -14.120 8.082 17.038 Atomic orbital electron populations 1.21663 0.81003 1.03035 1.00400 1.47873 1.06270 1.07245 1.71688 1.19657 0.92438 0.80148 0.98349 1.21318 1.36996 1.07164 0.91242 0.90811 1.24857 0.95233 0.97351 0.95556 1.69897 1.41449 1.23574 1.18660 0.86848 0.80106 0.79785 0.82919 1.19913 1.21048 1.19120 1.20377 0.88161 0.85140 0.77081 1.90627 1.13928 1.87135 1.50026 1.21731 0.98986 0.92960 1.03709 1.20862 0.96611 0.92652 0.99529 1.21919 0.95756 1.01573 0.97071 1.23442 1.00472 0.91901 1.05770 1.86737 1.57111 1.18532 1.43987 1.23378 0.98823 1.02313 0.97896 1.21795 0.97523 0.93391 1.02904 0.93708 0.90605 0.92080 0.95351 0.94590 0.92545 0.89182 0.89505 0.90449 0.91444 0.87792 0.89771 0.87970 0.90003 0.88124 0.90878 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 10.24 59.85 0.61 1.83 16 2 N -0.60 -11.96 2.86 -182.96 -0.52 -12.48 16 3 C 0.21 5.19 4.23 -5.19 -0.02 5.17 16 4 C -0.53 -15.05 9.94 -34.44 -0.34 -15.39 16 5 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 8 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 9 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 12 C 0.51 9.69 7.28 -10.99 -0.08 9.61 16 13 O -0.54 -12.39 13.52 5.55 0.08 -12.31 16 14 C -0.13 -1.78 3.70 -27.88 -0.10 -1.88 16 15 C -0.08 -0.99 1.60 -91.05 -0.15 -1.14 16 16 C -0.12 -1.79 4.83 -26.90 -0.13 -1.92 16 17 C -0.07 -0.90 6.46 37.21 0.24 -0.66 16 18 S -0.29 -3.59 22.33 -107.50 -2.40 -5.99 16 19 C -0.08 -0.75 6.45 37.21 0.24 -0.51 16 20 C -0.12 -1.15 5.05 -26.89 -0.14 -1.29 16 21 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 23 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 24 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 25 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.09 1.10 7.40 -51.93 -0.38 0.71 16 28 H 0.09 0.94 8.05 -51.93 -0.42 0.52 16 29 H 0.08 1.09 7.90 -51.93 -0.41 0.68 16 30 H 0.07 0.93 8.06 -51.93 -0.42 0.51 16 31 H 0.10 1.89 5.68 -51.93 -0.29 1.59 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 36 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 37 H 0.08 0.75 8.06 -51.93 -0.42 0.33 16 LS Contribution 304.89 15.07 4.59 4.59 Total: -1.00 -32.69 304.89 -8.06 -40.75 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -5.95 Total: -0.40 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 0.04 Total: -4.17 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.25 Total: -39.26 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.08 Total: -12.31 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -2.40 Total: -5.99 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.69 -8.06 -40.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125387607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.232 kcal (2) G-P(sol) polarization free energy of solvation -32.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds