Wall clock time and date at job start Sun Mar 29 2020 23:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86805 * 119.99861 * 2 1 4 4 H 1.48499 * 109.46782 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46807 * 299.99645 * 3 2 1 6 6 H 1.48499 * 109.47358 * 60.00151 * 3 2 1 7 7 C 1.40039 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99716 * 186.26912 * 7 2 1 9 9 C 1.41325 * 120.00207 * 6.26973 * 7 2 1 10 10 C 1.40873 * 120.13466 * 173.67603 * 9 7 2 11 11 N 1.31878 * 119.99529 * 180.02562 * 10 9 7 12 12 C 1.32168 * 120.30636 * 0.02562 * 11 10 9 13 13 C 1.40195 * 120.27689 * 359.97438 * 12 11 10 14 14 C 1.47689 * 120.00315 * 179.97438 * 13 12 11 15 15 C 1.31928 * 118.50549 * 180.02562 * 14 13 12 16 16 C 1.51617 * 120.27496 * 179.13320 * 15 14 13 17 17 H 1.09001 * 112.92921 * 157.17106 * 16 15 14 18 18 C 1.55146 * 105.90676 * 282.28059 * 16 15 14 19 19 C 1.54340 * 104.24523 * 83.29469 * 18 16 15 20 20 C 1.54058 * 105.08498 * 4.07290 * 19 18 16 21 21 H 1.09001 * 111.83850 * 142.93983 * 20 19 18 22 22 C 1.50254 * 118.50902 * 359.76597 * 14 13 12 23 23 N 1.48758 * 104.79677 * 22.28915 * 20 19 18 24 24 N 1.32705 * 119.98989 * 0.02562 * 13 12 11 25 25 H 0.97008 * 119.99777 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.00276 * 0.05230 * 10 9 7 27 27 H 1.08000 * 119.86092 * 179.97438 * 12 11 10 28 28 H 1.07998 * 119.86269 * 359.16566 * 15 14 13 29 29 H 1.09005 * 110.47962 * 201.99005 * 18 16 15 30 30 H 1.09002 * 110.47929 * 324.60794 * 18 16 15 31 31 H 1.08997 * 110.32273 * 245.17575 * 19 18 16 32 32 H 1.08995 * 110.32363 * 122.97020 * 19 18 16 33 33 H 1.09002 * 109.23025 * 306.66434 * 22 14 13 34 34 H 1.09002 * 109.22851 * 66.03433 * 22 14 13 35 35 H 1.00893 * 110.99963 * 200.15745 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3464 -0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8827 2.3965 1.2125 7 6 2.0075 -1.2128 0.0005 8 1 3.0827 -1.2155 0.1027 9 6 1.3072 -2.4331 -0.1326 10 6 2.0151 -3.6438 -0.2662 11 7 1.3588 -4.7809 -0.3907 12 6 0.0372 -4.7915 -0.3915 13 6 -0.6794 -3.5938 -0.2593 14 6 -2.1562 -3.6127 -0.2614 15 6 -2.8007 -2.4685 -0.1357 16 6 -4.3165 -2.4391 -0.1524 17 1 -4.7296 -1.5575 0.3378 18 6 -4.7280 -2.5760 -1.6421 19 6 -4.6906 -4.0958 -1.9083 20 6 -4.3671 -4.7340 -0.5440 21 1 -4.9033 -5.6717 -0.3976 22 6 -2.8563 -4.9336 -0.4127 23 7 -4.7785 -3.7153 0.4590 24 7 -0.0306 -2.4431 -0.1332 25 1 -0.4850 0.8401 -0.0004 26 1 3.0950 -3.6407 -0.2662 27 1 -0.4929 -5.7268 -0.4943 28 1 -2.2462 -1.5488 -0.0208 29 1 -5.7341 -2.1862 -1.7972 30 1 -4.0146 -2.0588 -2.2838 31 1 -3.9111 -4.3342 -2.6319 32 1 -5.6600 -4.4412 -2.2673 33 1 -2.4798 -5.4397 -1.3017 34 1 -2.6537 -5.5497 0.4633 35 1 -4.3245 -3.8768 1.3455 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242022708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:53:09 Heat of formation + Delta-G solvation = 56.755993 kcal Electronic energy + Delta-G solvation = -18919.647632 eV Core-core repulsion = 16110.088315 eV Total energy + Delta-G solvation = -2809.559317 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.17362 -38.73519 -34.14770 -33.46832 -31.61572 -30.87155 -30.15971 -29.11104 -26.13347 -24.34985 -23.39746 -21.85882 -20.83966 -19.98933 -17.86783 -17.60120 -16.39611 -15.55304 -15.32622 -14.91704 -14.51916 -14.19937 -13.71474 -13.33027 -13.03750 -12.60263 -12.49159 -12.07320 -11.80100 -11.54136 -11.53120 -11.42517 -11.24552 -10.99810 -10.78914 -10.47534 -10.44508 -10.18540 -9.89478 -9.57418 -9.46232 -8.51399 -8.30181 -7.48228 -7.37073 -6.58114 -4.74417 1.93996 2.75921 2.98879 3.03178 3.14081 3.38922 3.79768 4.44786 4.62494 4.81535 4.95178 5.12670 5.27886 5.32361 5.55938 5.64390 5.73597 5.82278 5.93260 5.97229 6.02230 6.08153 6.17695 6.23716 6.27074 6.32394 6.37466 6.56594 6.85244 6.90495 6.97284 7.07827 7.28459 7.51917 7.54688 7.68265 8.00007 8.36815 8.60914 9.20013 9.77579 10.06854 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.022854 B = 0.006989 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.857996 B = 4005.464598 C = 4983.422442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.067 3.933 3 Si 0.912 3.088 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.414 4.414 8 H 0.091 0.909 9 C 0.209 3.791 10 C -0.068 4.068 11 N -0.431 5.431 12 C -0.112 4.112 13 C 0.136 3.864 14 C -0.077 4.077 15 C -0.156 4.156 16 C 0.091 3.909 17 H 0.105 0.895 18 C -0.111 4.111 19 C -0.117 4.117 20 C 0.065 3.935 21 H 0.093 0.907 22 C -0.104 4.104 23 N -0.658 5.658 24 N -0.445 5.445 25 H 0.276 0.724 26 H 0.132 0.868 27 H 0.125 0.875 28 H 0.148 0.852 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.094 -1.656 -1.323 8.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.333 5.333 2 C -0.159 4.159 3 Si 0.736 3.264 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.446 4.446 8 H 0.109 0.891 9 C 0.082 3.918 10 C -0.237 4.237 11 N -0.143 5.143 12 C -0.271 4.271 13 C -0.011 4.011 14 C -0.079 4.079 15 C -0.177 4.177 16 C -0.019 4.019 17 H 0.123 0.877 18 C -0.149 4.149 19 C -0.155 4.155 20 C -0.045 4.045 21 H 0.111 0.889 22 C -0.143 4.143 23 N -0.286 5.286 24 N -0.163 5.163 25 H 0.087 0.913 26 H 0.150 0.850 27 H 0.143 0.857 28 H 0.166 0.834 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.019 -1.486 -1.470 9.258 hybrid contribution 1.609 0.646 0.097 1.736 sum -7.410 -0.840 -1.374 7.583 Atomic orbital electron populations 1.70053 1.07392 1.28194 1.27646 1.26116 0.94987 1.01399 0.93375 0.86180 0.80897 0.80601 0.78715 1.18183 1.19657 1.19674 1.19656 0.95007 0.89178 1.40769 0.89136 1.19386 0.88925 0.93410 0.90113 1.23191 0.99233 0.89438 1.11865 1.67623 1.09056 1.30063 1.07513 1.22570 0.90627 0.97133 1.16774 1.20864 0.93427 0.91424 0.95338 1.19550 0.91177 0.94161 1.02995 1.24172 0.95421 1.00154 0.97979 1.22176 0.91158 0.93667 0.94866 0.87748 1.22418 1.01052 0.96180 0.95265 1.22252 1.01374 0.95499 0.96355 1.22560 0.93200 0.96106 0.92605 0.88912 1.20996 0.94916 0.95734 1.02636 1.64168 1.57395 1.02045 1.04981 1.69584 1.07887 1.23183 1.15597 0.91323 0.85023 0.85720 0.83445 0.91542 0.91010 0.91298 0.91534 0.90474 0.91099 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.70 11.42 55.55 0.63 -17.06 16 2 C 0.07 1.62 5.49 -17.34 -0.10 1.53 16 3 Si 0.91 17.68 29.56 -169.99 -5.03 12.65 16 4 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 5 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.41 -10.60 9.15 -37.73 -0.35 -10.95 16 8 H 0.09 2.14 7.85 -52.49 -0.41 1.73 16 9 C 0.21 5.62 6.54 -84.84 -0.56 5.07 16 10 C -0.07 -1.73 10.98 -16.54 -0.18 -1.91 16 11 N -0.43 -10.89 10.47 -12.00 -0.13 -11.02 16 12 C -0.11 -2.67 10.57 -16.67 -0.18 -2.85 16 13 C 0.14 3.28 6.70 -82.90 -0.56 2.73 16 14 C -0.08 -1.51 5.60 -102.89 -0.58 -2.09 16 15 C -0.16 -2.97 8.43 -35.77 -0.30 -3.27 16 16 C 0.09 1.38 4.78 -66.18 -0.32 1.06 16 17 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 18 C -0.11 -1.54 6.40 -24.89 -0.16 -1.70 16 19 C -0.12 -1.52 6.37 -25.48 -0.16 -1.68 16 20 C 0.07 0.88 4.33 -66.15 -0.29 0.59 16 21 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 22 C -0.10 -1.63 3.89 -28.12 -0.11 -1.74 16 23 N -0.66 -9.38 7.44 -96.03 -0.71 -10.10 16 24 N -0.44 -11.86 6.88 -7.60 -0.05 -11.91 16 25 H 0.28 6.17 8.29 -40.82 -0.34 5.83 16 26 H 0.13 3.04 8.06 -52.49 -0.42 2.62 16 27 H 0.13 2.60 6.78 -52.49 -0.36 2.25 16 28 H 0.15 3.30 7.13 -52.49 -0.37 2.93 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.07 7.86 -51.93 -0.41 0.66 16 31 H 0.07 0.93 7.70 -51.93 -0.40 0.53 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.19 7.46 -51.93 -0.39 0.80 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.34 4.86 8.31 -39.30 -0.33 4.53 16 LS Contribution 286.46 15.07 4.32 4.32 Total: -1.00 -28.35 286.46 -9.12 -37.47 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -4.33 Total: 10.84 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -3.82 Total: -15.19 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: -0.26 Total: -50.09 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.35 -9.12 -37.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242022708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.228 kcal (2) G-P(sol) polarization free energy of solvation -28.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds