Wall clock time and date at job start Sun Mar 29 2020 23:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86805 * 119.99861 * 2 1 4 4 H 1.48499 * 109.46782 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46807 * 299.99645 * 3 2 1 6 6 H 1.48499 * 109.47358 * 60.00151 * 3 2 1 7 7 C 1.40039 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99716 * 186.26912 * 7 2 1 9 9 C 1.41325 * 120.00207 * 6.26973 * 7 2 1 10 10 C 1.40873 * 120.13466 * 173.67603 * 9 7 2 11 11 N 1.31878 * 119.99529 * 180.02562 * 10 9 7 12 12 C 1.32168 * 120.30636 * 0.02562 * 11 10 9 13 13 C 1.40195 * 120.27689 * 359.97438 * 12 11 10 14 14 C 1.47689 * 120.00315 * 179.97438 * 13 12 11 15 15 C 1.31928 * 118.50549 * 180.02562 * 14 13 12 16 16 C 1.51617 * 120.27496 * 179.13320 * 15 14 13 17 17 H 1.09001 * 112.92921 * 157.17106 * 16 15 14 18 18 C 1.55146 * 105.90676 * 282.28059 * 16 15 14 19 19 C 1.54340 * 104.24523 * 83.29469 * 18 16 15 20 20 C 1.54058 * 105.08498 * 4.07290 * 19 18 16 21 21 H 1.09001 * 111.83850 * 142.93983 * 20 19 18 22 22 C 1.50254 * 118.50902 * 359.76597 * 14 13 12 23 23 N 1.48758 * 104.79677 * 22.28915 * 20 19 18 24 24 N 1.32705 * 119.98989 * 0.02562 * 13 12 11 25 25 H 0.97008 * 119.99777 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.00276 * 0.05230 * 10 9 7 27 27 H 1.08000 * 119.86092 * 179.97438 * 12 11 10 28 28 H 1.07998 * 119.86269 * 359.16566 * 15 14 13 29 29 H 1.09005 * 110.47962 * 201.99005 * 18 16 15 30 30 H 1.09002 * 110.47929 * 324.60794 * 18 16 15 31 31 H 1.08997 * 110.32273 * 245.17575 * 19 18 16 32 32 H 1.08995 * 110.32363 * 122.97020 * 19 18 16 33 33 H 1.09002 * 109.23025 * 306.66434 * 22 14 13 34 34 H 1.09002 * 109.22851 * 66.03433 * 22 14 13 35 35 H 1.00893 * 110.99963 * 200.15745 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3464 -0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8827 2.3965 1.2125 7 6 2.0075 -1.2128 0.0005 8 1 3.0827 -1.2155 0.1027 9 6 1.3072 -2.4331 -0.1326 10 6 2.0151 -3.6438 -0.2662 11 7 1.3588 -4.7809 -0.3907 12 6 0.0372 -4.7915 -0.3915 13 6 -0.6794 -3.5938 -0.2593 14 6 -2.1562 -3.6127 -0.2614 15 6 -2.8007 -2.4685 -0.1357 16 6 -4.3165 -2.4391 -0.1524 17 1 -4.7296 -1.5575 0.3378 18 6 -4.7280 -2.5760 -1.6421 19 6 -4.6906 -4.0958 -1.9083 20 6 -4.3671 -4.7340 -0.5440 21 1 -4.9033 -5.6717 -0.3976 22 6 -2.8563 -4.9336 -0.4127 23 7 -4.7785 -3.7153 0.4590 24 7 -0.0306 -2.4431 -0.1332 25 1 -0.4850 0.8401 -0.0004 26 1 3.0950 -3.6407 -0.2662 27 1 -0.4929 -5.7268 -0.4943 28 1 -2.2462 -1.5488 -0.0208 29 1 -5.7341 -2.1862 -1.7972 30 1 -4.0146 -2.0588 -2.2838 31 1 -3.9111 -4.3342 -2.6319 32 1 -5.6600 -4.4412 -2.2673 33 1 -2.4798 -5.4397 -1.3017 34 1 -2.6537 -5.5497 0.4633 35 1 -4.3245 -3.8768 1.3455 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242022708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:53:09 Heat of formation + Delta-G solvation = 38.152947 kcal Electronic energy + Delta-G solvation = -18920.454320 eV Core-core repulsion = 16110.088315 eV Total energy + Delta-G solvation = -2810.366005 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.52637 -40.49365 -36.00381 -35.11145 -33.37708 -32.17495 -31.41035 -30.71892 -28.00361 -25.66637 -25.11149 -23.63242 -22.30877 -21.12078 -19.51827 -19.14397 -17.95406 -17.24411 -17.08939 -16.66041 -15.78463 -15.64283 -15.22033 -14.83269 -14.72617 -14.02179 -13.76039 -13.47657 -13.34370 -13.14408 -13.03768 -12.92880 -12.71221 -12.38601 -12.10706 -11.99008 -11.80286 -11.59819 -11.55645 -11.45613 -11.14683 -10.24042 -9.61485 -9.37124 -9.06675 -8.42803 -6.69871 0.17609 0.97233 1.38439 1.46641 1.54383 1.70382 2.15938 2.77611 3.25753 3.61368 3.77013 3.79248 3.84534 3.99408 4.03538 4.13468 4.34067 4.44530 4.50326 4.56730 4.72458 4.75949 4.80756 4.92161 5.05700 5.06484 5.09740 5.10889 5.17324 5.23064 5.32096 5.65019 5.71755 5.81486 6.01721 6.17337 6.33894 6.46668 6.68381 7.26499 7.85467 8.26679 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.022854 B = 0.006989 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.857996 B = 4005.464598 C = 4983.422442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.023 3.977 3 Si 0.994 3.006 4 H -0.252 1.252 5 H -0.266 1.266 6 H -0.264 1.264 7 C -0.439 4.439 8 H 0.100 0.900 9 C 0.175 3.825 10 C -0.093 4.093 11 N -0.440 5.440 12 C -0.121 4.121 13 C 0.123 3.877 14 C -0.092 4.092 15 C -0.148 4.148 16 C 0.096 3.904 17 H 0.114 0.886 18 C -0.110 4.110 19 C -0.116 4.116 20 C 0.070 3.930 21 H 0.122 0.878 22 C -0.097 4.097 23 N -0.650 5.650 24 N -0.472 5.472 25 H 0.284 0.716 26 H 0.146 0.854 27 H 0.154 0.846 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.660 -1.586 -1.521 9.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.201 4.201 3 Si 0.813 3.187 4 H -0.175 1.175 5 H -0.191 1.191 6 H -0.189 1.189 7 C -0.470 4.470 8 H 0.118 0.882 9 C 0.049 3.951 10 C -0.261 4.261 11 N -0.152 5.152 12 C -0.280 4.280 13 C -0.024 4.024 14 C -0.094 4.094 15 C -0.170 4.170 16 C -0.014 4.014 17 H 0.132 0.868 18 C -0.148 4.148 19 C -0.154 4.154 20 C -0.039 4.039 21 H 0.140 0.860 22 C -0.136 4.136 23 N -0.277 5.277 24 N -0.190 5.190 25 H 0.095 0.905 26 H 0.163 0.837 27 H 0.171 0.829 28 H 0.127 0.873 29 H 0.107 0.893 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.576 -1.438 -1.666 10.802 hybrid contribution 2.043 0.625 0.169 2.143 sum -8.533 -0.813 -1.497 8.701 Atomic orbital electron populations 1.70140 1.08967 1.29725 1.27293 1.27079 0.95851 1.04728 0.92412 0.84978 0.79500 0.75324 0.78902 1.17464 1.19092 1.18875 1.20068 0.95740 0.89865 1.41332 0.88171 1.19864 0.89676 0.94545 0.91017 1.23377 0.99994 0.89405 1.13367 1.67632 1.09898 1.29978 1.07675 1.23048 0.90398 0.98314 1.16267 1.21608 0.95819 0.90971 0.94029 1.19793 0.89073 0.96479 1.04071 1.24241 0.97866 0.98413 0.96511 1.22244 0.87977 0.94832 0.96348 0.86770 1.22418 1.01720 0.97073 0.93555 1.22297 1.02566 0.94576 0.95970 1.22685 0.91544 0.97104 0.92597 0.86039 1.21022 0.96277 0.93242 1.03022 1.64221 1.56754 1.01627 1.05110 1.69611 1.08001 1.24620 1.16747 0.90493 0.83675 0.82879 0.87282 0.89257 0.92784 0.92018 0.88965 0.90148 0.90445 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.76 11.42 21.84 0.25 -37.51 16 2 C 0.02 1.11 5.49 85.29 0.47 1.58 16 3 Si 0.99 36.19 29.56 68.60 2.03 38.22 16 4 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 5 H -0.27 -9.41 7.11 99.48 0.71 -8.70 16 6 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 7 C -0.44 -23.08 9.15 23.47 0.21 -22.87 16 8 H 0.10 4.85 7.85 -2.91 -0.02 4.83 16 9 C 0.18 9.82 6.54 40.25 0.26 10.08 16 10 C -0.09 -4.92 10.98 85.33 0.94 -3.98 16 11 N -0.44 -22.64 10.47 -191.89 -2.01 -24.65 16 12 C -0.12 -5.82 10.57 85.12 0.90 -4.92 16 13 C 0.12 6.05 6.70 41.99 0.28 6.33 16 14 C -0.09 -3.63 5.60 -18.36 -0.10 -3.73 16 15 C -0.15 -5.70 8.43 25.12 0.21 -5.49 16 16 C 0.10 2.76 4.78 44.82 0.21 2.98 16 17 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 18 C -0.11 -2.80 6.40 31.78 0.20 -2.60 16 19 C -0.12 -2.67 6.37 31.41 0.20 -2.47 16 20 C 0.07 1.67 4.33 44.90 0.19 1.87 16 21 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 22 C -0.10 -2.86 3.89 29.69 0.12 -2.74 16 23 N -0.65 -16.78 7.44 -457.75 -3.41 -20.18 16 24 N -0.47 -26.11 6.88 -177.97 -1.23 -27.34 16 25 H 0.28 12.97 8.29 -92.70 -0.77 12.20 16 26 H 0.15 6.94 8.06 -2.91 -0.02 6.92 16 27 H 0.15 6.26 6.78 -2.91 -0.02 6.24 16 28 H 0.11 5.10 7.13 -2.91 -0.02 5.08 16 29 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.05 1.57 7.86 -2.39 -0.02 1.55 16 31 H 0.06 1.52 7.70 -2.39 -0.02 1.50 16 32 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.08 2.32 7.46 -2.39 -0.02 2.30 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.34 8.97 8.31 -89.70 -0.75 8.22 16 Total: -1.00 -63.00 286.46 0.11 -62.89 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: 0.37 Total: 34.52 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 4.10 Total: -25.95 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -6.39 Total: -109.68 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 2.03 Total: 38.22 kcal Total: -63.00 0.11 -62.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242022708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.043 kcal (2) G-P(sol) polarization free energy of solvation -62.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds