Wall clock time and date at job start Sun Mar 29 2020 23:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86795 * 120.00125 * 2 1 4 4 H 1.48498 * 109.47289 * 239.99789 * 3 2 1 5 5 H 1.48504 * 109.47139 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47234 * 119.99734 * 3 2 1 7 7 C 1.37870 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00099 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00395 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47218 * 179.97438 * 9 7 2 11 11 C 1.50708 * 109.46840 * 179.97438 * 10 9 7 12 12 O 1.21272 * 119.99773 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99541 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99825 * 180.27708 * 13 11 10 15 15 H 1.09006 * 109.47043 * 34.72590 * 14 13 11 16 16 C 1.52998 * 109.47264 * 274.72602 * 14 13 11 17 17 O 1.42895 * 109.47116 * 295.55105 * 16 14 13 18 18 C 1.53001 * 109.47266 * 154.72572 * 14 13 11 19 19 H 1.08996 * 110.43588 * 62.16960 * 18 14 13 20 20 C 1.54813 * 110.48709 * 299.47939 * 18 14 13 21 21 C 1.55001 * 102.09076 * 220.44408 * 20 18 14 22 22 O 1.44375 * 103.48853 * 37.01969 * 21 20 18 23 23 C 1.43732 * 106.98391 * 319.94163 * 22 21 20 24 24 H 0.97006 * 119.99515 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47141 * 59.99693 * 9 7 2 26 26 H 1.09003 * 109.46626 * 299.99561 * 9 7 2 27 27 H 1.09000 * 109.47207 * 59.99866 * 10 9 7 28 28 H 1.08994 * 109.47232 * 299.99622 * 10 9 7 29 29 H 0.97001 * 120.00597 * 0.02562 * 13 11 10 30 30 H 1.09003 * 109.47224 * 55.54938 * 16 14 13 31 31 H 1.08999 * 109.47387 * 175.54825 * 16 14 13 32 32 H 0.96706 * 114.00255 * 180.02562 * 17 16 14 33 33 H 1.08998 * 110.90408 * 338.63853 * 20 18 14 34 34 H 1.09003 * 110.90353 * 102.24529 * 20 18 14 35 35 H 1.09000 * 110.61584 * 278.52668 * 21 20 18 36 36 H 1.08998 * 110.74990 * 155.59056 * 21 20 18 37 37 H 1.09004 * 109.88167 * 267.09315 * 23 22 21 38 38 H 1.09000 * 110.01187 * 146.00461 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2789 -4.9671 0.0011 13 7 2.1655 -6.1343 0.0008 14 6 1.4330 -7.4031 -0.0048 15 1 0.5219 -7.2940 -0.5931 16 6 1.0701 -7.7887 1.4307 17 8 2.2652 -8.0327 2.1750 18 6 2.3098 -8.4955 -0.6202 19 1 3.2085 -8.6444 -0.0217 20 6 2.6805 -8.1349 -2.0793 21 6 2.5559 -9.5046 -2.7940 22 8 1.4221 -10.1206 -2.1463 23 6 1.5209 -9.8134 -0.7456 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8904 27 1 2.8719 -3.6043 0.8905 28 1 2.8718 -3.6044 -0.8894 29 1 3.1355 -6.1344 0.0004 30 1 0.5123 -6.9757 1.8954 31 1 0.4577 -8.6903 1.4209 32 1 2.1108 -8.2831 3.0962 33 1 1.9748 -7.4146 -2.4932 34 1 3.7009 -7.7562 -2.1391 35 1 3.4557 -10.1005 -2.6411 36 1 2.3631 -9.3688 -3.8582 37 1 2.0502 -10.6129 -0.2272 38 1 0.5251 -9.6912 -0.3195 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001637562607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:38:29 Heat of formation + Delta-G solvation = -150.030997 kcal Electronic energy + Delta-G solvation = -19496.964135 eV Core-core repulsion = 16338.836191 eV Total energy + Delta-G solvation = -3158.127944 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.20727 -38.86433 -37.03742 -34.72509 -33.43519 -32.08129 -30.92831 -30.07285 -27.62955 -25.67001 -23.84004 -22.27540 -21.51660 -20.40156 -19.51644 -17.61994 -17.05602 -16.74983 -16.30729 -15.53961 -15.42814 -15.14318 -14.93290 -14.44390 -14.19618 -14.09059 -13.18415 -13.05768 -12.61301 -12.37972 -12.16883 -12.05889 -11.63143 -11.55657 -11.14758 -11.07624 -10.90135 -10.78295 -10.61211 -10.14061 -9.94089 -9.89839 -9.65539 -9.17174 -8.99534 -8.77737 -8.30939 -5.95305 -3.99742 3.24474 3.34901 3.38942 3.40474 3.45761 3.75247 4.18013 4.34685 4.39216 4.48289 4.73941 4.93375 4.97648 5.11645 5.22746 5.32040 5.38020 5.39532 5.49220 5.51513 5.60560 5.69949 5.73924 5.89073 6.05142 6.24462 6.26803 6.65028 6.74263 6.91120 7.47066 7.74792 7.87186 7.92209 8.08001 8.39686 8.79014 9.08700 9.63731 11.15615 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.033841 B = 0.003971 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.190948 B = 7049.208378 C = 7371.270157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.130 4.130 11 C 0.511 3.489 12 O -0.538 6.538 13 N -0.730 5.730 14 C 0.158 3.842 15 H 0.100 0.900 16 C 0.060 3.940 17 O -0.568 6.568 18 C -0.125 4.125 19 H 0.097 0.903 20 C -0.151 4.151 21 C 0.046 3.954 22 O -0.379 6.379 23 C 0.055 3.945 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.399 0.601 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.377 0.623 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.931 -20.384 -0.064 21.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.170 4.170 11 C 0.300 3.700 12 O -0.414 6.414 13 N -0.384 5.384 14 C 0.052 3.948 15 H 0.118 0.882 16 C -0.019 4.019 17 O -0.373 6.373 18 C -0.144 4.144 19 H 0.116 0.884 20 C -0.188 4.188 21 C -0.030 4.030 22 O -0.298 6.298 23 C -0.022 4.022 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.233 0.767 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.223 0.777 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.974 -20.214 -0.743 21.091 hybrid contribution 0.816 0.907 0.746 1.430 sum 6.790 -19.306 0.003 20.466 Atomic orbital electron populations 1.69996 1.06054 1.26672 1.50162 1.25020 0.94823 0.99203 0.95298 0.86650 0.79541 0.83176 0.78540 1.20258 1.21284 1.20257 1.21193 0.92894 0.91053 1.51460 0.92676 1.18888 0.93161 0.89377 0.98555 1.21859 1.00704 0.91932 1.02461 1.21584 0.88649 0.85706 0.74107 1.90660 1.14466 1.87648 1.48590 1.46121 1.10087 1.04776 1.77373 1.20961 0.96272 0.83569 0.93951 0.88213 1.22717 0.86883 0.99379 0.92933 1.86434 1.31912 1.92097 1.26903 1.22739 1.00023 0.94752 0.96917 0.88428 1.23219 1.03121 0.98198 0.94298 1.23564 0.89317 0.92134 0.98003 1.88873 1.46111 1.75436 1.19421 1.23175 1.00834 0.94986 0.83194 0.92911 0.95854 0.95896 0.90273 0.90297 0.76723 0.92524 0.93142 0.77670 0.89916 0.89943 0.92257 0.88930 0.92073 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.55 13.29 55.43 0.74 -26.82 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -15.05 9.11 -34.44 -0.31 -15.37 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.13 -2.64 5.64 -27.88 -0.16 -2.80 16 11 C 0.51 9.76 7.80 -10.98 -0.09 9.67 16 12 O -0.54 -12.50 15.64 5.56 0.09 -12.41 16 13 N -0.73 -10.27 4.66 -53.80 -0.25 -10.52 16 14 C 0.16 1.96 1.65 -67.93 -0.11 1.85 16 15 H 0.10 1.44 7.57 -51.93 -0.39 1.05 16 16 C 0.06 0.68 6.58 37.16 0.24 0.92 16 17 O -0.57 -5.79 12.73 -35.23 -0.45 -6.24 16 18 C -0.13 -1.23 2.48 -89.09 -0.22 -1.45 16 19 H 0.10 0.93 7.56 -51.93 -0.39 0.54 16 20 C -0.15 -1.44 6.37 -24.72 -0.16 -1.59 16 21 C 0.05 0.42 7.72 38.21 0.29 0.72 16 22 O -0.38 -4.39 11.52 -35.23 -0.41 -4.80 16 23 C 0.06 0.54 6.96 37.74 0.26 0.80 16 24 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 25 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 27 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 28 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 29 H 0.40 4.72 8.60 -40.82 -0.35 4.37 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.46 6.87 -51.93 -0.36 0.10 16 32 H 0.38 2.36 9.12 45.56 0.42 2.77 16 33 H 0.08 0.94 7.87 -51.93 -0.41 0.53 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.79 6.58 -51.93 -0.34 0.45 16 LS Contribution 316.15 15.07 4.76 4.76 Total: -1.00 -34.92 316.15 -6.17 -41.09 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.17 Total: 2.96 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -0.46 Total: -4.75 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.49 Total: -37.33 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.77 Total: -23.44 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.92 -6.17 -41.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001637562607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.941 kcal (2) G-P(sol) polarization free energy of solvation -34.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds