Wall clock time and date at job start Mon Mar 30 2020 01:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99409 * 2 1 4 4 C 1.50701 * 109.54382 * 297.31889 * 3 2 1 5 5 O 1.21279 * 120.00188 * 140.99658 * 4 3 2 6 6 N 1.34777 * 120.00000 * 321.26915 * 4 3 2 7 7 C 1.46500 * 120.00152 * 184.51395 * 6 4 3 8 8 C 1.52996 * 109.47137 * 179.97438 * 7 6 4 9 9 C 1.50699 * 109.47143 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00234 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00324 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99524 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00161 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47224 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47290 * 119.99706 * 13 11 9 16 16 H 1.48503 * 109.47049 * 239.99716 * 13 11 9 17 17 C 1.53176 * 109.62167 * 57.54469 * 3 2 1 18 18 C 1.53093 * 109.16522 * 176.88898 * 17 3 2 19 19 O 1.42902 * 109.41612 * 302.38999 * 18 17 3 20 20 C 1.42905 * 114.09556 * 61.15551 * 19 18 17 21 21 C 1.53089 * 109.41758 * 298.84174 * 20 19 18 22 22 H 1.08996 * 109.47230 * 55.10822 * 1 2 3 23 23 H 1.09006 * 109.46887 * 175.10327 * 1 2 3 24 24 H 1.08997 * 109.47082 * 295.10173 * 1 2 3 25 25 H 0.97001 * 119.99778 * 4.50657 * 6 4 3 26 26 H 1.08997 * 109.46642 * 299.99666 * 7 6 4 27 27 H 1.09003 * 109.47010 * 59.99757 * 7 6 4 28 28 H 1.09002 * 109.47660 * 299.99968 * 8 7 6 29 29 H 1.09003 * 109.47289 * 60.00025 * 8 7 6 30 30 H 0.97003 * 119.99916 * 179.97438 * 12 11 9 31 31 H 1.09006 * 109.52016 * 296.79609 * 17 3 2 32 32 H 1.09000 * 109.52064 * 56.98328 * 17 3 2 33 33 H 1.08996 * 109.47722 * 182.40514 * 18 17 3 34 34 H 1.08993 * 109.48859 * 62.37988 * 18 17 3 35 35 H 1.09007 * 109.47925 * 178.86145 * 20 19 18 36 36 H 1.09000 * 109.49078 * 58.83578 * 20 19 18 37 37 H 1.08999 * 109.52552 * 297.70068 * 21 20 19 38 38 H 1.09000 * 109.52293 * 177.51326 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.6197 2.0311 -1.2618 5 8 1.3533 3.2137 -1.2236 6 7 1.5612 1.3647 -2.4318 7 6 1.2786 2.0885 -3.6738 8 6 1.2693 1.1054 -4.8461 9 6 0.9780 1.8499 -6.1236 10 1 0.8162 2.9174 -6.1016 11 6 0.9180 1.1681 -7.3205 12 7 1.1156 -0.1319 -7.3474 13 14 0.5577 2.0910 -8.9041 14 1 0.3759 3.5342 -8.6055 15 1 1.6925 1.9191 -9.8464 16 1 -0.6824 1.5532 -9.5192 17 6 1.5119 2.0903 1.2175 18 6 2.1998 3.4576 1.2499 19 8 3.6167 3.2758 1.2851 20 6 4.1453 2.5895 0.1486 21 6 3.5357 1.1873 0.0719 22 1 -0.3633 0.5878 -0.8429 23 1 -0.3633 -1.0240 -0.0877 24 1 -0.3633 0.4360 0.9306 25 1 1.7063 0.4058 -2.4515 26 1 0.3055 2.5736 -3.5981 27 1 2.0486 2.8422 -3.8382 28 1 2.2426 0.6205 -4.9216 29 1 0.4995 0.3513 -4.6818 30 1 1.0730 -0.6116 -8.1894 31 1 0.4328 2.2269 1.1461 32 1 1.7510 1.5406 2.1279 33 1 1.8811 4.0037 2.1377 34 1 1.9278 4.0227 0.3584 35 1 5.2284 2.5103 0.2431 36 1 3.8991 3.1430 -0.7575 37 1 3.8157 0.6193 0.9592 38 1 3.9040 0.6782 -0.8187 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700898009.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:45 Heat of formation + Delta-G solvation = -135.762743 kcal Electronic energy + Delta-G solvation = -20246.991589 eV Core-core repulsion = 17089.482363 eV Total energy + Delta-G solvation = -3157.509227 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.99923 -38.07200 -37.44851 -35.01609 -32.91457 -32.56528 -31.21320 -29.68991 -27.15516 -25.55629 -24.20888 -23.53838 -22.05780 -20.88955 -19.51239 -17.69170 -16.75901 -16.48191 -16.09425 -15.60680 -15.42453 -15.17436 -14.61800 -14.57617 -14.26039 -14.06544 -13.57060 -13.41265 -12.80061 -12.44565 -12.40368 -12.26559 -11.79726 -11.46450 -11.25355 -11.09433 -11.04772 -10.67051 -10.62270 -10.39880 -10.27803 -9.78198 -9.60844 -9.37714 -8.89406 -8.62213 -8.42405 -6.13255 -4.16569 2.69275 3.25467 3.31331 3.34170 3.38869 3.58415 3.89208 4.37809 4.47998 4.59839 4.84928 4.89498 5.19999 5.21966 5.23867 5.25813 5.31473 5.43776 5.51988 5.61905 5.67848 5.71678 5.88281 5.90128 6.10131 6.22589 6.25326 6.65499 6.80782 6.88026 7.16806 7.46305 7.55550 7.83913 7.89210 8.21637 8.48124 8.89485 9.48653 10.98286 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.032458 B = 0.004668 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.436124 B = 5997.117527 C = 6308.941177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.369 6.369 3 C 0.100 3.900 4 C 0.487 3.513 5 O -0.542 6.542 6 N -0.709 5.709 7 C 0.119 3.881 8 C 0.013 3.987 9 C -0.522 4.522 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.893 5.893 13 Si 0.897 3.103 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.161 4.161 18 C 0.042 3.958 19 O -0.383 6.383 20 C 0.062 3.938 21 C -0.138 4.138 22 H 0.049 0.951 23 H 0.093 0.907 24 H 0.046 0.954 25 H 0.403 0.597 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.023 0.977 29 H 0.022 0.978 30 H 0.262 0.738 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.105 0.761 16.611 16.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.287 6.287 3 C 0.057 3.943 4 C 0.271 3.729 5 O -0.421 6.421 6 N -0.359 5.359 7 C -0.003 4.003 8 C -0.025 4.025 9 C -0.561 4.561 10 H 0.078 0.922 11 C -0.142 4.142 12 N -0.532 5.532 13 Si 0.724 3.276 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.199 4.199 18 C -0.034 4.034 19 O -0.302 6.302 20 C -0.015 4.015 21 C -0.176 4.176 22 H 0.067 0.933 23 H 0.111 0.889 24 H 0.065 0.935 25 H 0.238 0.762 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.151 1.352 16.625 16.818 hybrid contribution -0.618 -0.163 -1.206 1.365 sum 1.533 1.189 15.419 15.540 Atomic orbital electron populations 1.22910 0.80563 1.03420 1.00715 1.87978 1.20305 1.25602 1.94846 1.21854 0.95634 0.83900 0.92872 1.21086 0.78056 0.87921 0.85831 1.90553 1.49692 1.15813 1.86028 1.46417 1.69573 1.12417 1.07464 1.21786 0.99971 0.96224 0.82284 1.19326 0.97948 0.94236 0.90973 1.21070 1.48993 0.94568 0.91467 0.92227 1.24997 0.95035 0.94889 0.99321 1.69967 1.49507 1.07103 1.26599 0.86459 0.77948 0.80084 0.83089 1.19594 1.20884 1.20909 1.22582 1.01761 0.98206 0.97366 1.23085 0.80106 0.95501 1.04697 1.87868 1.21922 1.77365 1.43052 1.22573 0.98675 0.90403 0.89867 1.22177 0.90928 0.99611 1.04888 0.93278 0.88862 0.93521 0.76234 0.92447 0.92474 0.95878 0.95936 0.92849 0.90269 0.89986 0.89298 0.88396 0.88061 0.92425 0.89147 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.19 101.05 1.03 1.26 16 2 O -0.37 -4.85 9.75 -35.23 -0.34 -5.20 16 3 C 0.10 1.35 0.81 -91.58 -0.07 1.28 16 4 C 0.49 8.05 4.40 -10.98 -0.05 8.00 16 5 O -0.54 -10.25 13.11 5.56 0.07 -10.18 16 6 N -0.71 -12.37 5.22 -60.30 -0.31 -12.68 16 7 C 0.12 2.49 5.62 -4.04 -0.02 2.46 16 8 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 9 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 10 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 12 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 13 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 14 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 17 C -0.16 -1.98 4.32 -26.59 -0.11 -2.09 16 18 C 0.04 0.55 6.54 37.21 0.24 0.79 16 19 O -0.38 -5.25 10.77 -35.23 -0.38 -5.63 16 20 C 0.06 0.77 6.61 37.20 0.25 1.02 16 21 C -0.14 -1.67 5.28 -26.59 -0.14 -1.81 16 22 H 0.05 0.64 6.89 -51.93 -0.36 0.28 16 23 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.05 0.46 6.74 -51.93 -0.35 0.11 16 25 H 0.40 6.57 7.96 -40.82 -0.33 6.24 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.08 0.94 6.82 -51.93 -0.35 0.59 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.10 1.51 5.20 -51.93 -0.27 1.24 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.82 7.16 -51.93 -0.37 0.45 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 304.65 15.07 4.59 4.59 Total: -1.00 -30.41 304.65 -5.89 -36.30 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.80 Total: 3.80 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 0.57 Total: -2.00 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.42 Total: -37.84 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.65 Total: -21.00 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.41 -5.89 -36.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700898009.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.461 kcal (2) G-P(sol) polarization free energy of solvation -30.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds