Wall clock time and date at job start Mon Mar 30 2020 01:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99409 * 2 1 4 4 C 1.50701 * 109.54382 * 297.31889 * 3 2 1 5 5 O 1.21279 * 120.00188 * 140.99658 * 4 3 2 6 6 N 1.34777 * 120.00000 * 321.26915 * 4 3 2 7 7 C 1.46500 * 120.00152 * 184.51395 * 6 4 3 8 8 C 1.52996 * 109.47137 * 179.97438 * 7 6 4 9 9 C 1.50699 * 109.47143 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00234 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00324 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99524 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00161 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47224 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47290 * 119.99706 * 13 11 9 16 16 H 1.48503 * 109.47049 * 239.99716 * 13 11 9 17 17 C 1.53176 * 109.62167 * 57.54469 * 3 2 1 18 18 C 1.53093 * 109.16522 * 176.88898 * 17 3 2 19 19 O 1.42902 * 109.41612 * 302.38999 * 18 17 3 20 20 C 1.42905 * 114.09556 * 61.15551 * 19 18 17 21 21 C 1.53089 * 109.41758 * 298.84174 * 20 19 18 22 22 H 1.08996 * 109.47230 * 55.10822 * 1 2 3 23 23 H 1.09006 * 109.46887 * 175.10327 * 1 2 3 24 24 H 1.08997 * 109.47082 * 295.10173 * 1 2 3 25 25 H 0.97001 * 119.99778 * 4.50657 * 6 4 3 26 26 H 1.08997 * 109.46642 * 299.99666 * 7 6 4 27 27 H 1.09003 * 109.47010 * 59.99757 * 7 6 4 28 28 H 1.09002 * 109.47660 * 299.99968 * 8 7 6 29 29 H 1.09003 * 109.47289 * 60.00025 * 8 7 6 30 30 H 0.97003 * 119.99916 * 179.97438 * 12 11 9 31 31 H 1.09006 * 109.52016 * 296.79609 * 17 3 2 32 32 H 1.09000 * 109.52064 * 56.98328 * 17 3 2 33 33 H 1.08996 * 109.47722 * 182.40514 * 18 17 3 34 34 H 1.08993 * 109.48859 * 62.37988 * 18 17 3 35 35 H 1.09007 * 109.47925 * 178.86145 * 20 19 18 36 36 H 1.09000 * 109.49078 * 58.83578 * 20 19 18 37 37 H 1.08999 * 109.52552 * 297.70068 * 21 20 19 38 38 H 1.09000 * 109.52293 * 177.51326 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.6197 2.0311 -1.2618 5 8 1.3533 3.2137 -1.2236 6 7 1.5612 1.3647 -2.4318 7 6 1.2786 2.0885 -3.6738 8 6 1.2693 1.1054 -4.8461 9 6 0.9780 1.8499 -6.1236 10 1 0.8162 2.9174 -6.1016 11 6 0.9180 1.1681 -7.3205 12 7 1.1156 -0.1319 -7.3474 13 14 0.5577 2.0910 -8.9041 14 1 0.3759 3.5342 -8.6055 15 1 1.6925 1.9191 -9.8464 16 1 -0.6824 1.5532 -9.5192 17 6 1.5119 2.0903 1.2175 18 6 2.1998 3.4576 1.2499 19 8 3.6167 3.2758 1.2851 20 6 4.1453 2.5895 0.1486 21 6 3.5357 1.1873 0.0719 22 1 -0.3633 0.5878 -0.8429 23 1 -0.3633 -1.0240 -0.0877 24 1 -0.3633 0.4360 0.9306 25 1 1.7063 0.4058 -2.4515 26 1 0.3055 2.5736 -3.5981 27 1 2.0486 2.8422 -3.8382 28 1 2.2426 0.6205 -4.9216 29 1 0.4995 0.3513 -4.6818 30 1 1.0730 -0.6116 -8.1894 31 1 0.4328 2.2269 1.1461 32 1 1.7510 1.5406 2.1279 33 1 1.8811 4.0037 2.1377 34 1 1.9278 4.0227 0.3584 35 1 5.2284 2.5103 0.2431 36 1 3.8991 3.1430 -0.7575 37 1 3.8157 0.6193 0.9592 38 1 3.9040 0.6782 -0.8187 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700898009.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:44 Heat of formation + Delta-G solvation = -157.935812 kcal Electronic energy + Delta-G solvation = -20247.953086 eV Core-core repulsion = 17089.482363 eV Total energy + Delta-G solvation = -3158.470723 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.17515 -39.30127 -38.52249 -36.68562 -34.85898 -33.61855 -32.25441 -31.50878 -28.12239 -27.22526 -25.57334 -24.55837 -23.47606 -22.53404 -20.82379 -18.89038 -18.43222 -17.88610 -17.18327 -16.85820 -16.69650 -16.53877 -16.26823 -15.84096 -15.50338 -15.39764 -14.74550 -14.63376 -14.35034 -14.08259 -13.45874 -13.36750 -13.24437 -12.98881 -12.76354 -12.55169 -12.43656 -12.29037 -12.08200 -11.70528 -11.62408 -11.43881 -11.27516 -10.68931 -10.63380 -10.20832 -10.06460 -8.26250 -6.37223 1.37048 1.39814 1.40949 1.53770 2.05458 2.40111 2.50508 2.91501 3.08655 3.41623 3.55940 3.66257 3.89549 4.22281 4.28066 4.34692 4.38186 4.42346 4.42773 4.49733 4.56165 4.70178 4.73301 4.78854 4.80759 4.93026 4.95318 5.01117 5.30282 5.45969 5.53157 5.74419 5.83064 6.12474 6.16082 6.49251 6.76090 7.10289 7.32563 8.85802 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.032458 B = 0.004668 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.436124 B = 5997.117527 C = 6308.941177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.372 6.372 3 C 0.104 3.896 4 C 0.487 3.513 5 O -0.566 6.566 6 N -0.708 5.708 7 C 0.140 3.860 8 C 0.023 3.977 9 C -0.546 4.546 10 H 0.059 0.941 11 C 0.008 3.992 12 N -0.926 5.926 13 Si 0.965 3.035 14 H -0.265 1.265 15 H -0.276 1.276 16 H -0.277 1.277 17 C -0.157 4.157 18 C 0.041 3.959 19 O -0.390 6.390 20 C 0.060 3.940 21 C -0.136 4.136 22 H 0.028 0.972 23 H 0.112 0.888 24 H 0.065 0.935 25 H 0.409 0.591 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.008 0.992 29 H 0.006 0.994 30 H 0.266 0.734 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.128 0.872 36 H 0.032 0.968 37 H 0.111 0.889 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.253 0.668 17.565 17.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.290 6.290 3 C 0.061 3.939 4 C 0.274 3.726 5 O -0.446 6.446 6 N -0.359 5.359 7 C 0.017 3.983 8 C -0.014 4.014 9 C -0.585 4.585 10 H 0.077 0.923 11 C -0.191 4.191 12 N -0.566 5.566 13 Si 0.790 3.210 14 H -0.190 1.190 15 H -0.202 1.202 16 H -0.202 1.202 17 C -0.195 4.195 18 C -0.035 4.035 19 O -0.309 6.309 20 C -0.017 4.017 21 C -0.174 4.174 22 H 0.046 0.954 23 H 0.131 0.869 24 H 0.083 0.917 25 H 0.245 0.755 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.026 0.974 29 H 0.025 0.975 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.121 0.879 33 H 0.129 0.871 34 H 0.088 0.912 35 H 0.145 0.855 36 H 0.051 0.949 37 H 0.129 0.871 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.300 1.252 17.603 17.797 hybrid contribution -0.674 -0.140 -1.467 1.620 sum 1.626 1.112 16.136 16.256 Atomic orbital electron populations 1.23070 0.79726 1.04521 1.00766 1.87985 1.21220 1.25092 1.94740 1.21874 0.96733 0.83977 0.91267 1.21758 0.76847 0.87711 0.86332 1.90561 1.50469 1.17091 1.86494 1.46257 1.70120 1.12608 1.06866 1.21267 0.99188 0.95127 0.82711 1.19125 0.96303 0.94223 0.91770 1.21472 1.49199 0.94873 0.92923 0.92290 1.25867 0.94652 0.95731 1.02815 1.70068 1.50228 1.08564 1.27717 0.85393 0.77983 0.78929 0.78720 1.18952 1.20182 1.20221 1.22588 1.01801 0.97731 0.97367 1.23076 0.80061 0.95919 1.04462 1.87862 1.22182 1.77608 1.43269 1.22677 1.00239 0.90157 0.88615 1.22224 0.89646 0.99557 1.05978 0.95363 0.86939 0.91686 0.75496 0.93411 0.93238 0.97395 0.97525 0.92505 0.90027 0.87897 0.87085 0.91161 0.85454 0.94925 0.87107 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.19 113.37 1.16 1.48 16 2 O -0.37 -9.07 9.75 -148.98 -1.45 -10.53 16 3 C 0.10 2.67 0.81 -11.42 -0.01 2.66 16 4 C 0.49 16.05 4.40 87.66 0.39 16.43 16 5 O -0.57 -21.66 13.11 -3.03 -0.04 -21.70 16 6 N -0.71 -24.95 5.22 -463.07 -2.42 -27.37 16 7 C 0.14 5.99 5.62 86.38 0.49 6.47 16 8 C 0.02 1.17 5.09 29.85 0.15 1.32 16 9 C -0.55 -30.34 9.11 25.60 0.23 -30.11 16 10 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 11 C 0.01 0.46 5.46 84.66 0.46 0.92 16 12 N -0.93 -54.11 13.29 21.45 0.28 -53.82 16 13 Si 0.97 43.32 29.54 68.60 2.03 45.34 16 14 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 15 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 17 C -0.16 -3.52 4.32 30.68 0.13 -3.39 16 18 C 0.04 1.01 6.54 72.01 0.47 1.48 16 19 O -0.39 -10.03 10.77 -148.98 -1.60 -11.64 16 20 C 0.06 1.41 6.61 72.01 0.48 1.89 16 21 C -0.14 -3.03 5.28 30.69 0.16 -2.86 16 22 H 0.03 0.72 6.89 -2.39 -0.02 0.70 16 23 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 24 H 0.06 1.14 6.74 -2.39 -0.02 1.12 16 25 H 0.41 13.40 7.96 -92.71 -0.74 12.66 16 26 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.27 14.56 8.31 -92.71 -0.77 13.78 16 31 H 0.08 1.79 6.82 -2.38 -0.02 1.77 16 32 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.07 2.16 5.20 -2.39 -0.01 2.15 16 35 H 0.13 2.28 8.14 -2.38 -0.02 2.26 16 36 H 0.03 0.93 7.16 -2.39 -0.02 0.91 16 37 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -64.70 304.65 1.22 -63.48 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.32 Total: 19.94 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 4.11 Total: -3.71 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -2.13 Total: -81.19 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -3.10 Total: -43.86 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -64.70 1.22 -63.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700898009.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.455 kcal (2) G-P(sol) polarization free energy of solvation -64.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds