Wall clock time and date at job start Mon Mar 30 2020 00:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47205 * 2 1 4 4 C 1.53005 * 109.47361 * 119.99777 * 2 1 3 5 5 C 1.53002 * 109.47054 * 175.00223 * 4 2 1 6 6 N 1.46496 * 109.46603 * 179.97438 * 5 4 2 7 7 C 1.46506 * 120.00327 * 269.99734 * 6 5 4 8 8 C 1.50700 * 109.46897 * 270.00449 * 7 6 5 9 9 H 1.08000 * 120.00189 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99694 * 179.97438 * 8 7 6 11 11 N 1.31511 * 119.99929 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99756 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46802 * 90.00590 * 12 10 8 14 14 H 1.48498 * 109.46929 * 209.99975 * 12 10 8 15 15 H 1.48500 * 109.47424 * 330.00682 * 12 10 8 16 16 C 1.34778 * 120.00253 * 90.00144 * 6 5 4 17 17 O 1.21277 * 120.00426 * 179.97438 * 16 6 5 18 18 C 1.50706 * 119.99906 * 359.97438 * 16 6 5 19 19 H 1.08998 * 115.54512 * 34.41796 * 18 16 6 20 20 C 1.52993 * 117.50081 * 180.08799 * 18 16 6 21 21 C 1.52995 * 117.50181 * 248.75034 * 18 16 6 22 22 H 1.09000 * 117.49859 * 0.02562 * 21 18 16 23 23 F 1.39899 * 117.49961 * 145.01475 * 21 18 16 24 24 H 1.09002 * 109.47109 * 300.00273 * 1 2 3 25 25 H 1.08998 * 109.47076 * 60.00460 * 1 2 3 26 26 H 1.08995 * 109.47103 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47109 * 239.99726 * 2 1 3 28 28 H 1.09000 * 109.47477 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.47055 * 299.99572 * 3 2 1 30 30 H 1.08994 * 109.47153 * 59.99598 * 3 2 1 31 31 H 1.09002 * 109.46723 * 54.99859 * 4 2 1 32 32 H 1.09006 * 109.46682 * 295.00300 * 4 2 1 33 33 H 1.09001 * 109.47127 * 60.00195 * 5 4 2 34 34 H 1.09001 * 109.46997 * 299.99777 * 5 4 2 35 35 H 1.09004 * 109.46609 * 30.00204 * 7 6 5 36 36 H 1.09000 * 109.47311 * 150.00024 * 7 6 5 37 37 H 0.96998 * 119.99859 * 179.97438 * 11 10 8 38 38 H 1.08998 * 117.50372 * 214.98309 * 20 18 16 39 39 H 1.09006 * 117.50059 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.8309 1.1880 6 7 4.0532 -1.5209 2.3844 7 6 4.4017 -0.7527 3.5823 8 6 5.8556 -0.3608 3.5223 9 1 6.4597 -0.6549 2.6768 10 6 6.4145 0.3733 4.5469 11 7 5.6789 0.7310 5.5767 12 14 8.2169 0.8585 4.4729 13 1 8.3483 2.1722 3.7932 14 1 8.7596 0.9581 5.8516 15 1 8.9754 -0.1690 3.7152 16 6 4.1820 -2.8625 2.3833 17 8 4.5867 -3.4337 3.3737 18 6 3.8231 -3.6530 1.1514 19 1 4.0322 -3.1624 0.2008 20 6 3.9893 -5.1726 1.2138 21 6 2.5891 -4.5543 1.2249 22 1 2.0364 -4.5753 2.1642 23 9 1.8155 -4.6861 0.0668 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6054 -1.7198 1.2952 32 1 1.7516 -0.1582 2.1370 33 1 3.9995 0.1677 1.1421 34 1 3.8532 -1.3939 0.3003 35 1 3.7851 0.1449 3.6303 36 1 4.2258 -1.3621 4.4687 37 1 6.0722 1.2471 6.2977 38 1 4.3072 -5.6819 0.3041 39 1 4.3586 -5.6007 2.1457 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123556983.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:08:34 Heat of formation + Delta-G solvation = -79.596442 kcal Electronic energy + Delta-G solvation = -19868.415156 eV Core-core repulsion = 16725.714272 eV Total energy + Delta-G solvation = -3142.700884 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.153 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.63045 -39.42000 -36.90006 -35.49643 -34.42123 -32.59936 -29.09860 -27.41064 -27.01723 -24.41457 -23.28712 -22.34578 -21.77248 -19.85681 -18.47222 -17.28236 -16.44254 -15.95125 -15.75275 -15.11988 -14.91739 -14.61076 -14.24891 -13.95799 -13.78613 -13.32901 -12.87725 -12.54963 -12.48292 -12.21018 -12.11756 -11.88063 -11.71458 -11.31987 -11.17196 -10.90040 -10.80405 -10.58692 -10.55123 -10.43742 -10.28906 -10.15376 -10.00740 -9.63107 -9.00912 -8.45232 -7.69253 -6.06168 -4.10940 2.93548 3.28921 3.35751 3.40118 3.66792 3.87069 4.31778 4.42904 4.69935 4.74630 4.98218 5.01860 5.05600 5.07841 5.21002 5.28797 5.49484 5.66955 5.68200 5.74462 5.80988 5.83057 5.93619 6.00204 6.06031 6.11363 6.20037 6.20125 6.31356 6.52706 6.57829 7.03257 7.40679 7.50771 7.90073 8.20970 8.36783 8.86415 9.03206 9.54211 11.01901 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.015734 B = 0.007025 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.175343 B = 3985.013019 C = 5320.516985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.132 4.132 5 C 0.110 3.890 6 N -0.589 5.589 7 C 0.247 3.753 8 C -0.527 4.527 9 H 0.057 0.943 10 C 0.062 3.938 11 N -0.894 5.894 12 Si 0.898 3.102 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.274 1.274 16 C 0.534 3.466 17 O -0.538 6.538 18 C -0.197 4.197 19 H 0.129 0.871 20 C -0.159 4.159 21 C 0.038 3.962 22 H 0.136 0.864 23 F -0.184 7.184 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.033 0.967 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.109 0.891 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.718 -4.105 -12.119 15.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.171 4.171 5 C -0.014 4.014 6 N -0.318 5.318 7 C 0.128 3.872 8 C -0.566 4.566 9 H 0.076 0.924 10 C -0.140 4.140 11 N -0.533 5.533 12 Si 0.725 3.275 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.199 1.199 16 C 0.320 3.680 17 O -0.416 6.416 18 C -0.219 4.219 19 H 0.147 0.853 20 C -0.197 4.197 21 C 0.002 3.998 22 H 0.154 0.846 23 F -0.164 7.164 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.127 0.873 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.506 -4.271 -11.415 14.863 hybrid contribution 0.974 0.492 -0.216 1.113 sum -7.532 -3.779 -11.632 14.363 Atomic orbital electron populations 1.21823 0.95483 1.01515 1.01460 1.21046 0.95505 0.96451 0.98182 1.21914 1.01646 0.95794 1.01454 1.22092 0.96214 1.00594 0.98152 1.21579 0.93324 0.98814 0.87670 1.48170 1.62488 1.05446 1.15732 1.19304 0.95591 0.90568 0.81761 1.21431 0.95389 1.33844 1.05918 0.92449 1.24928 0.98190 0.95857 0.95073 1.69929 1.36148 1.38200 1.09053 0.86504 0.84894 0.78703 0.77381 1.20623 1.21062 1.19888 1.19159 0.78856 0.82731 0.87286 1.90673 1.46452 1.69693 1.34800 1.23138 1.03255 0.94392 1.01090 0.85332 1.23655 0.96666 0.93758 1.05621 1.22068 0.86233 1.04974 0.86536 0.84645 1.92798 1.76284 1.96127 1.51201 0.92728 0.93026 0.92849 0.91404 0.92057 0.93203 0.92503 0.92156 0.91284 0.89718 0.91745 0.94859 0.93872 0.92701 0.87297 0.85942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.19 37.16 0.34 -1.17 16 2 C -0.09 -1.07 2.92 -90.62 -0.26 -1.33 16 3 C -0.15 -1.73 8.95 37.16 0.33 -1.40 16 4 C -0.13 -1.85 5.01 -26.73 -0.13 -1.98 16 5 C 0.11 1.79 4.99 -4.04 -0.02 1.77 16 6 N -0.59 -12.30 2.46 -175.05 -0.43 -12.73 16 7 C 0.25 6.37 5.16 -5.19 -0.03 6.34 16 8 C -0.53 -14.85 9.39 -34.44 -0.32 -15.18 16 9 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 10 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 12 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 16 C 0.53 10.97 7.46 -10.98 -0.08 10.89 16 17 O -0.54 -13.28 15.84 5.56 0.09 -13.19 16 18 C -0.20 -3.00 5.27 -91.77 -0.48 -3.48 16 19 H 0.13 1.75 6.44 -51.93 -0.33 1.41 16 20 C -0.16 -2.09 10.03 -26.70 -0.27 -2.36 16 21 C 0.04 0.51 7.60 -26.70 -0.20 0.31 16 22 H 0.14 1.73 8.14 -51.93 -0.42 1.31 16 23 F -0.18 -2.48 17.60 2.25 0.04 -2.44 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.74 6.57 -51.93 -0.34 0.40 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.43 6.49 -51.93 -0.34 1.10 16 34 H 0.06 0.91 6.00 -51.93 -0.31 0.60 16 35 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 36 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.12 1.71 7.67 -51.93 -0.40 1.32 16 LS Contribution 327.67 15.07 4.94 4.94 Total: -1.00 -31.54 327.67 -7.18 -38.71 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.30 Total: -0.45 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -1.23 Total: -5.94 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.31 Total: -38.41 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.09 Total: -13.19 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.54 -7.18 -38.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123556983.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.884 kcal (2) G-P(sol) polarization free energy of solvation -31.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds