Wall clock time and date at job start Mon Mar 30 2020 00:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47205 * 2 1 4 4 C 1.53005 * 109.47361 * 119.99777 * 2 1 3 5 5 C 1.53002 * 109.47054 * 175.00223 * 4 2 1 6 6 N 1.46496 * 109.46603 * 179.97438 * 5 4 2 7 7 C 1.46506 * 120.00327 * 269.99734 * 6 5 4 8 8 C 1.50700 * 109.46897 * 270.00449 * 7 6 5 9 9 H 1.08000 * 120.00189 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99694 * 179.97438 * 8 7 6 11 11 N 1.31511 * 119.99929 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99756 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46802 * 90.00590 * 12 10 8 14 14 H 1.48498 * 109.46929 * 209.99975 * 12 10 8 15 15 H 1.48500 * 109.47424 * 330.00682 * 12 10 8 16 16 C 1.34778 * 120.00253 * 90.00144 * 6 5 4 17 17 O 1.21277 * 120.00426 * 179.97438 * 16 6 5 18 18 C 1.50706 * 119.99906 * 359.97438 * 16 6 5 19 19 H 1.08998 * 115.54512 * 34.41796 * 18 16 6 20 20 C 1.52993 * 117.50081 * 180.08799 * 18 16 6 21 21 C 1.52995 * 117.50181 * 248.75034 * 18 16 6 22 22 H 1.09000 * 117.49859 * 0.02562 * 21 18 16 23 23 F 1.39899 * 117.49961 * 145.01475 * 21 18 16 24 24 H 1.09002 * 109.47109 * 300.00273 * 1 2 3 25 25 H 1.08998 * 109.47076 * 60.00460 * 1 2 3 26 26 H 1.08995 * 109.47103 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47109 * 239.99726 * 2 1 3 28 28 H 1.09000 * 109.47477 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.47055 * 299.99572 * 3 2 1 30 30 H 1.08994 * 109.47153 * 59.99598 * 3 2 1 31 31 H 1.09002 * 109.46723 * 54.99859 * 4 2 1 32 32 H 1.09006 * 109.46682 * 295.00300 * 4 2 1 33 33 H 1.09001 * 109.47127 * 60.00195 * 5 4 2 34 34 H 1.09001 * 109.46997 * 299.99777 * 5 4 2 35 35 H 1.09004 * 109.46609 * 30.00204 * 7 6 5 36 36 H 1.09000 * 109.47311 * 150.00024 * 7 6 5 37 37 H 0.96998 * 119.99859 * 179.97438 * 11 10 8 38 38 H 1.08998 * 117.50372 * 214.98309 * 20 18 16 39 39 H 1.09006 * 117.50059 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.8309 1.1880 6 7 4.0532 -1.5209 2.3844 7 6 4.4017 -0.7527 3.5823 8 6 5.8556 -0.3608 3.5223 9 1 6.4597 -0.6549 2.6768 10 6 6.4145 0.3733 4.5469 11 7 5.6789 0.7310 5.5767 12 14 8.2169 0.8585 4.4729 13 1 8.3483 2.1722 3.7932 14 1 8.7596 0.9581 5.8516 15 1 8.9754 -0.1690 3.7152 16 6 4.1820 -2.8625 2.3833 17 8 4.5867 -3.4337 3.3737 18 6 3.8231 -3.6530 1.1514 19 1 4.0322 -3.1624 0.2008 20 6 3.9893 -5.1726 1.2138 21 6 2.5891 -4.5543 1.2249 22 1 2.0364 -4.5753 2.1642 23 9 1.8155 -4.6861 0.0668 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6054 -1.7198 1.2952 32 1 1.7516 -0.1582 2.1370 33 1 3.9995 0.1677 1.1421 34 1 3.8532 -1.3939 0.3003 35 1 3.7851 0.1449 3.6303 36 1 4.2258 -1.3621 4.4687 37 1 6.0722 1.2471 6.2977 38 1 4.3072 -5.6819 0.3041 39 1 4.3586 -5.6007 2.1457 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123556983.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:08:33 Heat of formation + Delta-G solvation = -97.286292 kcal Electronic energy + Delta-G solvation = -19869.182245 eV Core-core repulsion = 16725.714272 eV Total energy + Delta-G solvation = -3143.467973 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.70250 -40.99335 -38.12294 -36.79773 -35.98632 -34.65353 -30.64998 -29.11043 -27.94804 -26.16418 -24.66156 -23.45978 -23.35500 -20.85887 -19.93041 -18.77580 -18.48366 -17.44469 -17.07905 -16.58597 -16.29798 -15.86400 -15.71099 -15.27981 -14.97098 -14.62131 -14.33526 -14.20023 -13.72201 -13.63148 -13.27927 -13.16895 -13.08847 -12.88268 -12.68740 -12.60162 -12.29164 -12.18031 -11.86267 -11.62055 -11.54636 -11.51679 -11.41104 -11.17199 -10.66740 -10.65154 -9.46268 -8.23918 -6.38859 1.35455 1.38461 1.46949 1.50969 2.17428 2.38975 2.62409 3.05151 3.08858 3.52066 3.55859 3.86864 3.94741 3.99658 4.03693 4.14216 4.33515 4.53710 4.64013 4.73523 4.82616 4.84893 4.89993 4.96100 5.01309 5.07868 5.08131 5.16229 5.16715 5.22584 5.36445 5.50798 5.54176 5.58026 5.81533 6.04001 6.66349 6.74105 7.24714 7.40921 8.83248 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.015734 B = 0.007025 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.175343 B = 3985.013019 C = 5320.516985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.151 4.151 4 C -0.123 4.123 5 C 0.108 3.892 6 N -0.594 5.594 7 C 0.264 3.736 8 C -0.544 4.544 9 H 0.053 0.947 10 C 0.009 3.991 11 N -0.927 5.927 12 Si 0.967 3.033 13 H -0.263 1.263 14 H -0.280 1.280 15 H -0.273 1.273 16 C 0.526 3.474 17 O -0.591 6.591 18 C -0.205 4.205 19 H 0.153 0.847 20 C -0.146 4.146 21 C 0.055 3.945 22 H 0.138 0.862 23 F -0.179 7.179 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.022 0.978 36 H -0.001 1.001 37 H 0.267 0.733 38 H 0.141 0.859 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.658 -4.442 -14.711 17.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.209 4.209 4 C -0.161 4.161 5 C -0.014 4.014 6 N -0.323 5.323 7 C 0.143 3.857 8 C -0.583 4.583 9 H 0.071 0.929 10 C -0.190 4.190 11 N -0.567 5.567 12 Si 0.791 3.209 13 H -0.188 1.188 14 H -0.206 1.206 15 H -0.197 1.197 16 C 0.315 3.685 17 O -0.473 6.473 18 C -0.227 4.227 19 H 0.170 0.830 20 C -0.183 4.183 21 C 0.019 3.981 22 H 0.155 0.845 23 F -0.159 7.159 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.103 0.897 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.040 0.960 36 H 0.017 0.983 37 H 0.076 0.924 38 H 0.159 0.841 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.475 -4.598 -14.055 17.044 hybrid contribution 0.904 0.586 0.603 1.235 sum -7.571 -4.012 -13.452 15.949 Atomic orbital electron populations 1.21804 0.94369 1.01940 1.01963 1.21030 0.96371 0.96058 0.97126 1.21918 1.01072 0.96036 1.01828 1.22000 0.94508 1.00837 0.98789 1.21835 0.94663 0.98295 0.86653 1.48171 1.62555 1.05976 1.15636 1.18725 0.94706 0.89667 0.82633 1.21699 0.96413 1.34144 1.06037 0.92866 1.25849 1.02961 0.95660 0.94551 1.70048 1.38216 1.38715 1.09732 0.85424 0.78958 0.78882 0.77614 1.18817 1.20560 1.19728 1.20040 0.77553 0.82510 0.88432 1.90638 1.48729 1.70623 1.37274 1.23001 1.05690 0.95102 0.98885 0.82991 1.23780 0.96054 0.91872 1.06595 1.21982 0.86144 1.03312 0.86697 0.84456 1.92816 1.76110 1.95957 1.51009 0.93475 0.91328 0.92473 0.89688 0.92952 0.91209 0.93771 0.91802 0.93616 0.90740 0.88724 0.96028 0.98321 0.92367 0.84086 0.87130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.19 71.98 0.66 -1.99 16 2 C -0.09 -1.82 2.92 -10.79 -0.03 -1.85 16 3 C -0.15 -3.27 8.95 71.98 0.64 -2.62 16 4 C -0.12 -3.36 5.01 30.60 0.15 -3.20 16 5 C 0.11 3.44 4.99 86.38 0.43 3.87 16 6 N -0.59 -25.45 2.46 -826.13 -2.03 -27.48 16 7 C 0.26 14.34 5.16 85.63 0.44 14.78 16 8 C -0.54 -31.58 9.39 25.60 0.24 -31.34 16 9 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 10 C 0.01 0.51 5.46 84.66 0.46 0.98 16 11 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 12 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 13 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 14 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 15 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 16 C 0.53 21.88 7.46 87.66 0.65 22.54 16 17 O -0.59 -30.29 15.84 -3.02 -0.05 -30.33 16 18 C -0.21 -5.86 5.27 -11.54 -0.06 -5.92 16 19 H 0.15 3.60 6.44 -2.39 -0.02 3.58 16 20 C -0.15 -3.46 10.03 30.62 0.31 -3.15 16 21 C 0.06 1.34 7.60 30.62 0.23 1.57 16 22 H 0.14 3.32 8.14 -2.39 -0.02 3.30 16 23 F -0.18 -4.20 17.60 44.97 0.79 -3.41 16 24 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.05 1.21 6.57 -2.39 -0.02 1.20 16 29 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.07 2.53 6.49 -2.39 -0.02 2.52 16 34 H 0.09 2.44 6.00 -2.39 -0.01 2.43 16 35 H 0.02 1.20 8.07 -2.39 -0.02 1.18 16 36 H 0.00 -0.08 7.42 -2.39 -0.02 -0.10 16 37 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 38 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.11 2.97 7.67 -2.38 -0.02 2.96 16 Total: -1.00 -70.56 327.67 6.18 -64.39 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 1.02 Total: 12.13 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 4.14 Total: -6.34 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -1.74 Total: -83.45 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.05 Total: -30.33 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.79 Total: -3.41 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -70.56 6.18 -64.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123556983.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.901 kcal (2) G-P(sol) polarization free energy of solvation -70.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds