Wall clock time and date at job start Sun Mar 29 2020 23:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81400 * 109.46860 * 2 1 4 4 C 1.81397 * 103.00319 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47494 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.47200 * 180.02562 * 5 4 3 7 7 C 1.46903 * 111.00418 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47667 * 205.00504 * 7 6 5 9 9 C 1.52997 * 109.47232 * 180.02562 * 8 7 6 10 10 C 1.52992 * 109.47296 * 59.99748 * 9 8 7 11 11 C 1.50700 * 109.47257 * 59.99902 * 10 9 8 12 12 H 1.07999 * 119.99988 * 359.97438 * 11 10 9 13 13 C 1.37885 * 120.00047 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99792 * 359.72305 * 13 11 10 15 15 Si 1.86795 * 120.00009 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.47021 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47081 * 119.99727 * 15 13 11 18 18 H 1.48501 * 109.47213 * 240.00099 * 15 13 11 19 19 C 1.53003 * 109.47195 * 299.99941 * 10 9 8 20 20 C 1.52994 * 109.46903 * 84.99606 * 7 6 5 21 21 H 1.09007 * 109.47169 * 60.00336 * 1 2 3 22 22 H 1.09004 * 109.47238 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47321 * 299.99928 * 1 2 3 24 24 H 1.08994 * 109.47321 * 240.00072 * 2 1 3 25 25 H 1.09000 * 109.47005 * 119.99262 * 2 1 3 26 26 H 1.09009 * 109.46826 * 59.99847 * 4 3 2 27 27 H 1.09002 * 109.46977 * 300.00547 * 4 3 2 28 28 H 1.08995 * 109.46990 * 60.00198 * 5 4 3 29 29 H 1.09002 * 109.47484 * 300.00272 * 5 4 3 30 30 H 1.00896 * 111.00418 * 303.95553 * 6 5 4 31 31 H 1.09005 * 109.46638 * 325.00521 * 7 6 5 32 32 H 1.08998 * 109.46987 * 59.99359 * 8 7 6 33 33 H 1.09005 * 109.46648 * 300.00005 * 8 7 6 34 34 H 1.08996 * 109.46678 * 299.99615 * 9 8 7 35 35 H 1.09004 * 109.46869 * 179.97438 * 9 8 7 36 36 H 1.08997 * 109.47279 * 180.02562 * 10 9 8 37 37 H 0.97000 * 119.99468 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.47453 * 180.02562 * 19 10 9 39 39 H 1.08996 * 109.47248 * 300.00419 * 19 10 9 40 40 H 1.08999 * 109.47824 * 300.01002 * 20 7 6 41 41 H 1.09005 * 109.46726 * 60.00969 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9370 1.5060 0.0008 5 6 4.6063 2.8818 0.0002 6 7 6.0659 2.7164 0.0002 7 6 6.7436 4.0197 -0.0009 8 6 8.1387 3.8688 -0.6106 9 6 8.8446 5.2261 -0.6112 10 6 8.9685 5.7372 0.8255 11 6 9.7693 4.7548 1.6409 12 1 10.1513 3.8557 1.1804 13 6 10.0135 5.0034 2.9750 14 7 9.5520 6.1005 3.5345 15 14 11.0067 3.7861 3.9854 16 1 11.4129 2.6449 3.1263 17 1 12.2174 4.4589 4.5208 18 1 10.1787 3.2865 5.1124 19 6 7.5734 5.8882 1.4352 20 6 6.8673 4.5314 1.4356 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 4.2405 0.9543 -0.8891 27 1 4.2398 0.9546 0.8910 28 1 4.3028 3.4338 0.8897 29 1 4.3035 3.4329 -0.8902 30 1 6.3660 2.1532 0.7817 31 1 6.1641 4.7299 -0.5909 32 1 8.0504 3.5042 -1.6340 33 1 8.7181 3.1585 -0.0206 34 1 8.2654 5.9366 -1.2009 35 1 9.8387 5.1184 -1.0451 36 1 9.4711 6.7044 0.8251 37 1 9.7235 6.2752 4.4732 38 1 7.6616 6.2527 2.4587 39 1 6.9941 6.5987 0.8455 40 1 5.8734 4.6389 1.8700 41 1 7.4468 3.8212 2.0256 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173326310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:04 Heat of formation + Delta-G solvation = -33.535304 kcal Electronic energy + Delta-G solvation = -17385.656940 eV Core-core repulsion = 14811.166593 eV Total energy + Delta-G solvation = -2574.490347 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.28373 -35.30420 -33.05008 -32.38314 -30.48772 -29.48307 -27.17468 -24.66420 -23.93583 -22.03841 -21.36166 -20.63722 -18.69685 -16.37332 -15.99410 -15.44879 -15.24747 -15.04174 -14.66850 -14.38137 -13.88822 -13.42838 -13.18272 -12.83710 -12.62114 -12.35776 -11.99255 -11.77609 -11.66741 -11.38152 -11.28009 -11.00475 -10.93174 -10.84838 -10.52337 -10.31053 -10.10075 -10.05328 -9.64835 -9.14963 -8.97560 -8.65830 -8.29129 -7.89251 -7.79523 -5.94655 -3.98694 1.46865 2.45339 3.29271 3.38277 3.41550 4.45715 4.56620 4.63246 4.68397 4.87741 5.05846 5.09792 5.35698 5.40243 5.48315 5.48845 5.58637 5.76975 5.78176 5.87625 5.94023 6.10966 6.34584 6.47850 6.48098 6.56190 6.78678 6.79917 6.90754 7.11137 7.21296 7.33355 7.50135 7.60324 7.72725 7.79724 7.97339 8.18652 8.52239 9.04461 9.64334 11.11264 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.028614 B = 0.004031 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.297833 B = 6944.292872 C = 7350.514318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 S -0.266 6.266 4 C -0.080 4.080 5 C 0.075 3.925 6 N -0.686 5.686 7 C 0.094 3.906 8 C -0.091 4.091 9 C -0.107 4.107 10 C 0.042 3.958 11 C -0.498 4.498 12 H 0.056 0.944 13 C 0.059 3.941 14 N -0.892 5.892 15 Si 0.883 3.117 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.286 1.286 19 C -0.104 4.104 20 C -0.126 4.126 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.339 0.661 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.032 0.968 35 H 0.047 0.953 36 H 0.023 0.977 37 H 0.257 0.743 38 H 0.089 0.911 39 H 0.013 0.987 40 H 0.028 0.972 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.629 -9.795 -6.332 17.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.237 4.237 3 S -0.041 6.041 4 C -0.228 4.228 5 C -0.055 4.055 6 N -0.316 5.316 7 C -0.015 4.015 8 C -0.129 4.129 9 C -0.146 4.146 10 C 0.024 3.976 11 C -0.537 4.537 12 H 0.074 0.926 13 C -0.141 4.141 14 N -0.531 5.531 15 Si 0.711 3.289 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.213 1.213 19 C -0.143 4.143 20 C -0.165 4.165 21 H 0.083 0.917 22 H 0.088 0.912 23 H 0.083 0.917 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.107 0.893 27 H 0.097 0.903 28 H 0.057 0.943 29 H 0.095 0.905 30 H 0.157 0.843 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.042 0.958 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.031 0.969 40 H 0.047 0.953 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.181 -8.868 -6.857 18.077 hybrid contribution 1.095 -1.496 1.672 2.497 sum -13.086 -10.364 -5.185 17.479 Atomic orbital electron populations 1.21510 0.92307 1.02402 1.03237 1.23274 1.00102 0.95519 1.04831 1.86909 1.06414 1.12669 1.98149 1.23363 0.92033 1.02159 1.05268 1.21578 0.88801 0.93526 1.01584 1.60727 1.03422 1.17642 1.49848 1.21601 0.95094 0.87954 0.96818 1.21338 0.94347 0.98582 0.98637 1.21562 0.98120 0.95357 0.99524 1.18702 0.92896 0.96406 0.89612 1.21208 1.31994 1.06135 0.94315 0.92591 1.24955 0.95933 0.95232 0.97995 1.69888 1.46084 1.25019 1.12131 0.86675 0.80169 0.81630 0.80377 1.19824 1.21179 1.21259 1.21442 0.96284 0.93193 1.03349 1.22010 0.98079 1.00804 0.95632 0.91680 0.91214 0.91669 0.90167 0.90203 0.89348 0.90300 0.94325 0.90541 0.84295 0.91978 0.93963 0.91282 0.94912 0.93433 0.95840 0.93278 0.89229 0.96850 0.95327 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.92 37.16 0.37 -0.60 16 2 C -0.09 -0.76 6.66 37.16 0.25 -0.51 16 3 S -0.27 -3.09 21.74 -107.50 -2.34 -5.42 16 4 C -0.08 -0.93 6.20 37.16 0.23 -0.70 16 5 C 0.08 1.04 5.49 -3.83 -0.02 1.02 16 6 N -0.69 -10.63 6.25 -106.73 -0.67 -11.30 16 7 C 0.09 1.70 2.47 -67.71 -0.17 1.54 16 8 C -0.09 -1.74 5.30 -26.73 -0.14 -1.88 16 9 C -0.11 -2.23 5.41 -26.74 -0.14 -2.38 16 10 C 0.04 1.03 2.58 -91.77 -0.24 0.79 16 11 C -0.50 -13.13 6.61 -34.44 -0.23 -13.36 16 12 H 0.06 1.47 6.71 -52.49 -0.35 1.12 16 13 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 14 N -0.89 -25.18 11.33 55.43 0.63 -24.55 16 15 Si 0.88 21.03 29.54 -169.99 -5.02 16.01 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 C -0.10 -2.43 5.23 -26.75 -0.14 -2.57 16 20 C -0.13 -2.60 4.95 -26.76 -0.13 -2.73 16 21 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 22 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.08 0.64 8.14 -51.92 -0.42 0.21 16 26 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 27 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 28 H 0.04 0.58 7.44 -51.93 -0.39 0.19 16 29 H 0.08 1.08 8.05 -51.93 -0.42 0.67 16 30 H 0.34 5.19 8.47 -39.29 -0.33 4.85 16 31 H 0.06 1.12 7.80 -51.93 -0.40 0.72 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.09 2.36 6.08 -51.93 -0.32 2.05 16 39 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.03 0.55 7.45 -51.93 -0.39 0.17 16 41 H 0.07 1.63 7.20 -51.93 -0.37 1.26 16 LS Contribution 328.14 15.07 4.95 4.95 Total: -1.00 -27.19 328.14 -10.43 -37.63 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -7.52 Total: 2.55 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: -0.46 Total: -19.86 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -0.04 Total: -35.85 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.34 Total: -5.42 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.19 -10.43 -37.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173326310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.090 kcal (2) G-P(sol) polarization free energy of solvation -27.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds