Wall clock time and date at job start Sun Mar 29 2020 23:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47425 * 2 1 4 4 O 1.42900 * 109.47124 * 239.99603 * 2 1 3 5 5 C 1.53007 * 109.46851 * 119.99985 * 2 1 3 6 6 H 1.08999 * 109.47200 * 64.99946 * 5 2 1 7 7 O 1.42895 * 109.47170 * 304.99671 * 5 2 1 8 8 C 1.53005 * 109.47022 * 184.99873 * 5 2 1 9 9 N 1.46894 * 109.46976 * 186.21662 * 8 5 2 10 10 C 1.46843 * 111.00172 * 284.16625 * 9 8 5 11 11 C 1.53039 * 109.51844 * 185.84589 * 10 9 8 12 12 C 1.53121 * 109.27786 * 300.80802 * 11 10 9 13 13 C 1.50697 * 109.57250 * 177.59993 * 12 11 10 14 14 H 1.07999 * 119.99682 * 240.29461 * 13 12 11 15 15 C 1.37874 * 120.00219 * 60.29723 * 13 12 11 16 16 N 1.31518 * 119.99950 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00079 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47198 * 60.00050 * 17 15 13 19 19 H 1.48498 * 109.47293 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47296 * 299.99628 * 17 15 13 21 21 C 1.53118 * 109.15024 * 57.66632 * 12 11 10 22 22 C 1.46848 * 111.00088 * 48.38087 * 9 8 5 23 23 H 1.09001 * 109.47274 * 300.00224 * 1 2 3 24 24 H 1.09003 * 109.46728 * 60.00135 * 1 2 3 25 25 H 1.08999 * 109.47013 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47561 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47057 * 299.99664 * 3 2 1 28 28 H 1.09004 * 109.47569 * 59.99697 * 3 2 1 29 29 H 0.96696 * 113.99705 * 60.00257 * 4 2 1 30 30 H 0.96700 * 114.00293 * 300.00393 * 7 5 2 31 31 H 1.08998 * 109.47087 * 66.21435 * 8 5 2 32 32 H 1.08999 * 109.47122 * 306.21544 * 8 5 2 33 33 H 1.09003 * 109.46643 * 305.85763 * 10 9 8 34 34 H 1.09004 * 109.46198 * 65.83308 * 10 9 8 35 35 H 1.08999 * 109.49848 * 60.75590 * 11 10 9 36 36 H 1.08998 * 109.50332 * 180.87277 * 11 10 9 37 37 H 1.08999 * 109.52946 * 297.76155 * 12 11 10 38 38 H 0.96997 * 119.99892 * 180.02562 * 16 15 13 39 39 H 1.09006 * 109.49832 * 182.39791 * 21 12 11 40 40 H 1.08994 * 109.53823 * 62.30455 * 21 12 11 41 41 H 1.09005 * 109.45946 * 294.17133 * 22 9 8 42 42 H 1.08996 * 109.46345 * 54.15475 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7213 1.2493 6 1 1.7516 -1.7715 1.2057 7 8 1.4702 -0.1188 2.4131 8 6 3.5648 -0.6134 1.3138 9 7 4.0667 -1.4288 2.4278 10 6 3.8240 -0.7666 3.7158 11 6 4.4861 -1.5708 4.8369 12 6 3.9060 -2.9878 4.8532 13 6 4.5954 -3.8033 5.9166 14 1 5.1387 -4.6962 5.6448 15 6 4.5324 -3.4095 7.2364 16 7 3.8711 -2.3219 7.5673 17 14 5.3863 -4.4208 8.5545 18 1 6.8419 -4.4807 8.2671 19 1 5.1697 -3.7891 9.8809 20 1 4.8264 -5.7962 8.5635 21 6 4.1292 -3.6376 3.4849 22 6 3.4776 -2.7737 2.4028 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1301 1.4424 -0.0005 27 1 1.6768 1.9562 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.7210 -0.2702 -1.9979 30 1 1.6858 0.8181 2.5166 31 1 3.8492 0.4274 1.4684 32 1 3.9943 -0.9723 0.3785 33 1 4.2450 0.2386 3.6925 34 1 2.7508 -0.7067 3.8968 35 1 5.5612 -1.6195 4.6637 36 1 4.2927 -1.0874 5.7946 37 1 2.8378 -2.9417 5.0648 38 1 3.8271 -2.0447 8.4958 39 1 3.6807 -4.6311 3.4764 40 1 5.1985 -3.7195 3.2902 41 1 2.4059 -2.7042 2.5899 42 1 3.6471 -3.2263 1.4258 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473374521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:38 Heat of formation + Delta-G solvation = -108.964538 kcal Electronic energy + Delta-G solvation = -20827.862491 eV Core-core repulsion = 17807.348417 eV Total energy + Delta-G solvation = -3020.514075 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.85615 -37.72909 -35.98337 -33.67032 -31.97391 -31.26285 -29.74234 -28.12438 -27.44173 -25.40849 -23.24819 -21.88866 -21.06312 -20.33275 -18.41594 -16.99792 -16.74403 -16.26688 -15.40037 -15.27443 -14.65384 -14.36685 -14.22098 -13.81719 -13.55938 -13.11201 -12.79685 -12.48140 -12.33284 -12.08581 -11.96643 -11.89738 -11.72070 -11.31111 -11.16889 -10.96396 -10.84629 -10.63596 -10.40885 -10.36407 -10.15469 -9.83650 -9.74308 -9.30871 -8.83740 -8.60015 -8.19521 -7.42299 -5.88071 -3.93174 3.38454 3.42435 3.45655 3.87942 4.32980 4.52368 4.56048 4.66107 4.73311 4.78958 5.25461 5.27879 5.35447 5.41810 5.50986 5.55929 5.75694 5.76387 5.88204 5.98121 6.04422 6.08503 6.17055 6.26009 6.48693 6.53061 6.73809 6.81217 7.01303 7.19839 7.30379 7.43517 7.55321 7.63614 7.74975 7.84136 7.95388 8.17885 8.27932 8.59035 9.10494 9.70462 11.17931 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.045050 B = 0.004718 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.386262 B = 5933.056822 C = 6105.161205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.097 3.903 3 C -0.186 4.186 4 O -0.554 6.554 5 C 0.083 3.917 6 H 0.110 0.890 7 O -0.541 6.541 8 C 0.028 3.972 9 N -0.528 5.528 10 C 0.045 3.955 11 C -0.104 4.104 12 C 0.049 3.951 13 C -0.510 4.510 14 H 0.053 0.947 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.889 3.111 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.106 4.106 22 C 0.056 3.944 23 H 0.072 0.928 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.374 0.626 30 H 0.368 0.632 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.038 0.962 36 H 0.090 0.910 37 H 0.021 0.979 38 H 0.258 0.742 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.031 0.969 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.345 8.287 -15.663 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.055 3.945 3 C -0.243 4.243 4 O -0.360 6.360 5 C 0.022 3.978 6 H 0.127 0.873 7 O -0.347 6.347 8 C -0.101 4.101 9 N -0.252 5.252 10 C -0.082 4.082 11 C -0.142 4.142 12 C 0.031 3.969 13 C -0.548 4.548 14 H 0.071 0.929 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.717 3.283 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.144 4.144 22 C -0.071 4.071 23 H 0.091 0.909 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.221 0.779 30 H 0.216 0.784 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.108 0.892 37 H 0.039 0.961 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.829 7.349 -14.991 17.380 hybrid contribution -0.504 0.599 0.243 0.819 sum -5.333 7.948 -14.749 17.582 Atomic orbital electron populations 1.22406 0.95403 1.02946 1.02354 1.21928 0.93289 0.91848 0.87447 1.22587 1.02775 0.96368 1.02582 1.86553 1.77043 1.56983 1.15416 1.22627 0.94682 0.97998 0.82471 0.87272 1.86732 1.76414 1.28339 1.43178 1.22914 0.91915 0.98613 0.96667 1.62272 1.57319 1.02498 1.03071 1.22493 1.00187 0.96376 0.89131 1.21643 0.97951 0.97958 0.96655 1.18653 0.96269 0.92022 0.89961 1.21202 1.32528 1.09439 0.91655 0.92918 1.24960 0.95411 0.95131 0.98492 1.69881 1.42166 1.23490 1.17583 0.86714 0.80141 0.80436 0.81002 1.20374 1.21421 1.20421 1.21676 0.99662 0.96928 0.96153 1.22158 0.96560 0.89450 0.98977 0.90899 0.92786 0.91849 0.91014 0.92183 0.91535 0.77858 0.78390 0.91232 0.89861 0.93620 0.92968 0.94337 0.89162 0.96104 0.93161 0.93394 0.92714 0.95051 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 8.62 37.16 0.32 -1.35 16 2 C 0.10 0.99 0.93 -90.62 -0.08 0.91 16 3 C -0.19 -1.54 8.12 37.15 0.30 -1.24 16 4 O -0.55 -5.80 12.42 -35.23 -0.44 -6.24 16 5 C 0.08 1.12 2.02 -26.72 -0.05 1.07 16 6 H 0.11 1.72 6.05 -51.93 -0.31 1.40 16 7 O -0.54 -7.65 9.67 -35.23 -0.34 -7.99 16 8 C 0.03 0.41 4.52 -3.82 -0.02 0.39 16 9 N -0.53 -9.79 4.86 -234.67 -1.14 -10.93 16 10 C 0.05 0.91 4.96 -3.84 -0.02 0.89 16 11 C -0.10 -2.55 5.12 -26.65 -0.14 -2.69 16 12 C 0.05 1.29 2.16 -91.65 -0.20 1.09 16 13 C -0.51 -14.50 8.56 -34.44 -0.29 -14.79 16 14 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.72 5.31 -17.82 -0.09 1.63 16 16 N -0.89 -26.05 11.37 55.43 0.63 -25.42 16 17 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C -0.11 -2.37 5.32 -26.65 -0.14 -2.51 16 22 C 0.06 1.08 4.49 -3.83 -0.02 1.07 16 23 H 0.07 0.72 7.56 -51.93 -0.39 0.33 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.64 6.49 -51.93 -0.34 0.30 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.50 6.89 -51.93 -0.36 0.15 16 29 H 0.37 2.36 9.04 45.56 0.41 2.77 16 30 H 0.37 4.03 7.53 45.56 0.34 4.38 16 31 H 0.07 0.92 6.46 -51.93 -0.34 0.58 16 32 H 0.08 1.23 7.67 -51.93 -0.40 0.83 16 33 H 0.05 0.84 7.96 -51.93 -0.41 0.43 16 34 H 0.05 1.09 5.79 -51.93 -0.30 0.79 16 35 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 2.45 6.17 -51.93 -0.32 2.13 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.03 0.62 6.45 -51.93 -0.33 0.29 16 42 H 0.05 0.96 8.12 -51.93 -0.42 0.53 16 LS Contribution 314.54 15.07 4.74 4.74 Total: -1.00 -30.99 314.54 -7.68 -38.66 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.67 Total: 5.92 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -0.44 Total: -15.54 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: -0.51 Total: -36.35 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.78 Total: -14.23 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.99 -7.68 -38.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473374521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.300 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds