Wall clock time and date at job start Mon Mar 30 2020 00:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42900 * 113.99415 * 2 1 4 4 H 1.08992 * 109.52761 * 29.87829 * 3 2 1 5 5 C 1.53097 * 109.52318 * 269.68145 * 3 2 1 6 6 O 1.42901 * 109.41413 * 182.49041 * 5 3 2 7 7 C 1.42902 * 114.09831 * 61.16225 * 6 5 3 8 8 C 1.53086 * 109.41678 * 298.84057 * 7 6 5 9 9 C 1.53183 * 109.51664 * 150.00454 * 3 2 1 10 10 H 1.08998 * 109.54411 * 56.92590 * 9 3 2 11 11 N 1.46897 * 109.54154 * 296.74959 * 9 3 2 12 12 C 1.46901 * 111.00281 * 167.45151 * 11 9 3 13 13 C 1.46906 * 110.99923 * 291.40135 * 11 9 3 14 14 C 1.53000 * 109.46872 * 169.99900 * 13 11 9 15 15 C 1.52999 * 109.46927 * 180.02562 * 14 13 11 16 16 C 1.50702 * 109.47348 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99657 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00236 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99690 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99913 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47002 * 180.02562 * 20 18 16 22 22 H 1.48499 * 109.47144 * 299.99850 * 20 18 16 23 23 H 1.48501 * 109.47297 * 59.99678 * 20 18 16 24 24 H 1.08999 * 109.46894 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46958 * 299.99974 * 1 2 3 26 26 H 1.08999 * 109.47063 * 59.99629 * 1 2 3 27 27 H 1.08999 * 109.48033 * 302.47881 * 5 3 2 28 28 H 1.08999 * 109.47342 * 62.50817 * 5 3 2 29 29 H 1.09006 * 109.47825 * 58.82173 * 7 6 5 30 30 H 1.09002 * 109.48109 * 178.85502 * 7 6 5 31 31 H 1.09005 * 109.52274 * 297.70630 * 8 7 6 32 32 H 1.08998 * 109.52621 * 177.51198 * 8 7 6 33 33 H 1.08994 * 109.47304 * 189.44683 * 12 11 9 34 34 H 1.08999 * 109.46766 * 309.45157 * 12 11 9 35 35 H 1.09009 * 109.47065 * 69.44593 * 12 11 9 36 36 H 1.08998 * 109.46699 * 50.00431 * 13 11 9 37 37 H 1.08997 * 109.47130 * 289.99980 * 13 11 9 38 38 H 1.08998 * 109.47025 * 60.00731 * 14 13 11 39 39 H 1.09002 * 109.47469 * 300.00395 * 14 13 11 40 40 H 1.09004 * 109.47193 * 59.99998 * 15 14 13 41 41 H 1.09002 * 109.47113 * 300.00299 * 15 14 13 42 42 H 0.97000 * 120.00548 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3446 2.0005 0.5117 5 6 2.2256 1.7697 -1.4429 6 8 2.8597 3.0503 -1.4403 7 6 4.1471 3.0626 -0.8203 8 6 4.0091 2.6504 0.6475 9 6 3.3607 1.2646 0.7218 10 1 4.0086 0.5312 0.2418 11 7 3.1551 0.8929 2.1280 12 6 4.4299 0.5542 2.7749 13 6 2.4616 1.9618 2.8591 14 6 2.0446 1.4485 4.2388 15 6 1.3218 2.5616 5.0000 16 6 0.9116 2.0563 6.3592 17 1 1.1430 1.0424 6.6508 18 6 0.2400 2.8878 7.2301 19 7 -0.0422 4.1222 6.8748 20 14 -0.2689 2.2612 8.9147 21 1 -0.9715 3.3411 9.6530 22 1 -1.1784 1.0980 8.7561 23 1 0.9379 1.8459 9.6738 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 2.8581 1.0518 -1.9651 28 1 1.2629 1.8417 -1.9490 29 1 4.8048 2.3617 -1.3344 30 1 4.5688 4.0661 -0.8780 31 1 3.3841 3.3735 1.1717 32 1 4.9952 2.6164 1.1107 33 1 4.2358 0.1243 3.7574 34 1 4.9676 -0.1688 2.1615 35 1 5.0321 1.4561 2.8854 36 1 1.5758 2.2672 2.3022 37 1 3.1297 2.8151 2.9755 38 1 2.9304 1.1431 4.7958 39 1 1.3765 0.5952 4.1224 40 1 0.4359 2.8667 4.4429 41 1 1.9896 3.4152 5.1164 42 1 0.2225 4.4477 6.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880429708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:10:50 Heat of formation + Delta-G solvation = -99.943481 kcal Electronic energy + Delta-G solvation = -20414.448722 eV Core-core repulsion = 17394.325830 eV Total energy + Delta-G solvation = -3020.122892 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.26668 -37.38088 -37.17947 -34.11837 -32.14292 -30.71201 -30.45403 -26.94535 -26.58019 -25.78911 -23.51957 -23.28280 -22.06367 -20.74450 -19.29237 -17.10506 -16.72986 -16.61519 -16.11131 -15.43004 -15.34851 -14.74934 -14.45800 -14.31066 -13.71545 -13.68996 -13.56677 -13.04948 -12.82351 -12.76146 -12.09002 -11.82460 -11.66136 -11.53566 -11.33739 -11.21780 -11.14819 -10.72237 -10.71036 -10.36102 -10.16539 -10.07994 -9.70600 -9.67553 -9.29542 -8.50846 -8.29534 -8.04425 -6.33046 -4.01466 3.42510 3.45708 3.47898 3.66556 3.89370 3.99539 4.55370 4.58618 4.66733 4.81310 4.94540 4.98213 5.10186 5.26904 5.34576 5.37508 5.42349 5.44114 5.46494 5.54201 5.58737 5.66501 5.73436 5.76774 5.79199 5.91383 6.00164 6.10044 6.25216 6.58593 6.65365 6.83730 6.98951 7.21009 7.28172 7.33251 7.46222 7.59130 8.26799 8.50281 8.92266 9.70747 11.07564 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.026109 B = 0.004543 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.167645 B = 6161.284352 C = 6361.605085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.065 3.935 4 H 0.073 0.927 5 C 0.042 3.958 6 O -0.377 6.377 7 C 0.064 3.936 8 C -0.191 4.191 9 C 0.087 3.913 10 H 0.086 0.914 11 N -0.526 5.526 12 C 0.025 3.975 13 C 0.052 3.948 14 C -0.097 4.097 15 C 0.009 3.991 16 C -0.599 4.599 17 H 0.048 0.952 18 C 0.013 3.987 19 N -0.915 5.915 20 Si 1.069 2.931 21 H -0.283 1.283 22 H -0.288 1.288 23 H -0.288 1.288 24 H 0.085 0.915 25 H 0.047 0.953 26 H 0.035 0.965 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.023 0.977 36 H 0.065 0.935 37 H 0.031 0.969 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.005 0.995 41 H 0.003 0.997 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.416 -5.370 -16.923 19.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C 0.006 3.994 4 H 0.091 0.909 5 C -0.036 4.036 6 O -0.296 6.296 7 C -0.014 4.014 8 C -0.230 4.230 9 C -0.022 4.022 10 H 0.104 0.896 11 N -0.247 5.247 12 C -0.123 4.123 13 C -0.075 4.075 14 C -0.135 4.135 15 C -0.028 4.028 16 C -0.637 4.637 17 H 0.066 0.934 18 C -0.190 4.190 19 N -0.551 5.551 20 Si 0.897 3.103 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.215 1.215 24 H 0.104 0.896 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.042 0.958 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.023 0.977 41 H 0.022 0.978 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.377 -5.378 -15.566 17.660 hybrid contribution 1.227 0.259 -1.291 1.800 sum 7.604 -5.120 -16.857 19.188 Atomic orbital electron populations 1.22806 0.81154 1.02724 0.99949 1.87934 1.19452 1.26048 1.94795 1.22799 0.95433 0.86040 0.95123 0.90926 1.23081 0.98576 0.85444 0.96493 1.87953 1.32370 1.30238 1.79040 1.22571 0.84886 1.02233 0.91690 1.22976 1.02644 0.99100 0.98320 1.21831 0.94949 0.94857 0.90572 0.89610 1.62190 1.21250 1.40960 1.00349 1.22394 0.90052 0.99451 1.00398 1.22397 0.97283 0.91618 0.96244 1.21498 0.99873 1.00032 0.92048 1.19198 0.94523 0.93617 0.95481 1.22053 1.40650 1.00389 1.00625 0.93358 1.25855 0.94413 0.94504 1.04232 1.70781 1.45104 1.16161 1.23089 0.83552 0.76403 0.75350 0.75006 1.20794 1.21440 1.21477 0.89630 0.93471 0.94604 0.92317 0.88703 0.93007 0.88607 0.89949 0.90210 0.90659 0.92075 0.95834 0.91690 0.95080 0.93245 0.92499 0.97683 0.97828 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.82 101.05 1.09 1.45 16 2 O -0.36 -5.11 10.28 -35.23 -0.36 -5.47 16 3 C 0.07 0.86 2.18 -26.59 -0.06 0.80 16 4 H 0.07 1.06 6.00 -51.93 -0.31 0.75 16 5 C 0.04 0.47 6.47 37.21 0.24 0.71 16 6 O -0.38 -4.63 10.77 -35.23 -0.38 -5.01 16 7 C 0.06 0.65 6.84 37.20 0.25 0.90 16 8 C -0.19 -2.23 4.68 -26.59 -0.12 -2.35 16 9 C 0.09 1.14 1.94 -67.52 -0.13 1.01 16 10 H 0.09 1.07 7.89 -51.93 -0.41 0.66 16 11 N -0.53 -8.14 4.62 -234.65 -1.08 -9.22 16 12 C 0.03 0.35 8.90 60.07 0.53 0.88 16 13 C 0.05 0.92 3.81 -3.82 -0.01 0.90 16 14 C -0.10 -2.08 5.07 -26.73 -0.14 -2.22 16 15 C 0.01 0.25 4.28 -27.88 -0.12 0.13 16 16 C -0.60 -17.52 9.11 -34.44 -0.31 -17.84 16 17 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 18 C 0.01 0.39 5.46 -17.82 -0.10 0.30 16 19 N -0.91 -28.59 13.65 55.43 0.76 -27.83 16 20 Si 1.07 25.77 29.90 -169.99 -5.08 20.69 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 26 H 0.04 0.35 7.96 -51.93 -0.41 -0.07 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 0.96 7.96 -51.93 -0.41 0.54 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.11 6.36 -51.93 -0.33 0.78 16 32 H 0.08 0.86 7.17 -51.93 -0.37 0.48 16 33 H 0.07 1.12 6.74 -51.93 -0.35 0.77 16 34 H 0.06 0.73 7.91 -51.93 -0.41 0.31 16 35 H 0.02 0.31 7.16 -51.92 -0.37 -0.06 16 36 H 0.06 1.18 6.17 -51.93 -0.32 0.86 16 37 H 0.03 0.55 6.71 -51.93 -0.35 0.20 16 38 H 0.05 1.05 6.67 -51.93 -0.35 0.71 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.00 0.13 8.01 -51.93 -0.42 -0.28 16 41 H 0.00 0.09 8.01 -51.93 -0.42 -0.32 16 42 H 0.27 8.33 7.22 -40.82 -0.29 8.04 16 LS Contribution 324.59 15.07 4.89 4.89 Total: -1.00 -32.25 324.59 -7.39 -39.64 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -7.26 Total: -2.36 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: 1.13 Total: -15.33 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: -0.33 Total: -37.05 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -0.74 Total: -10.48 kcal Atomic # 14 Polarization: 25.77 SS G_CDS: -5.08 Total: 20.69 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.25 -7.39 -39.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880429708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.302 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds