Wall clock time and date at job start Sun Mar 29 2020 23:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35899 * 117.00183 * 2 1 4 4 C 1.38756 * 120.05478 * 0.25943 * 3 2 1 5 5 C 1.38119 * 119.94824 * 180.31681 * 4 3 2 6 6 C 1.38288 * 120.05171 * 359.67754 * 5 4 3 7 7 C 1.38245 * 120.11494 * 0.02562 * 6 5 4 8 8 C 1.38171 * 120.05074 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.02477 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.47157 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47376 * 59.99903 * 9 8 7 12 12 H 1.08002 * 119.99685 * 359.97438 * 11 9 8 13 13 C 1.37877 * 120.00216 * 180.02562 * 11 9 8 14 14 N 1.31516 * 120.00069 * 179.97438 * 13 11 9 15 15 Si 1.86800 * 119.99806 * 359.97438 * 13 11 9 16 16 H 1.48503 * 109.46845 * 90.00621 * 15 13 11 17 17 H 1.48503 * 109.47399 * 210.00111 * 15 13 11 18 18 H 1.48498 * 109.47295 * 330.00717 * 15 13 11 19 19 C 1.50698 * 109.47160 * 299.99727 * 9 8 7 20 20 C 1.34517 * 125.78696 * 240.00425 * 19 9 8 21 21 C 1.41385 * 106.84085 * 180.02562 * 20 19 9 22 22 C 1.34515 * 106.83806 * 359.97438 * 21 20 19 23 23 O 1.34297 * 125.79020 * 59.69260 * 19 9 8 24 24 H 1.08993 * 109.46980 * 299.99290 * 1 2 3 25 25 H 1.08995 * 109.46976 * 59.99845 * 1 2 3 26 26 H 1.09002 * 109.46730 * 179.97438 * 1 2 3 27 27 H 1.08011 * 120.02760 * 0.02562 * 4 3 2 28 28 H 1.07997 * 119.97817 * 179.70060 * 5 4 3 29 29 H 1.08002 * 119.94515 * 180.02562 * 6 5 4 30 30 H 1.07996 * 119.97747 * 179.97438 * 7 6 5 31 31 H 0.97000 * 119.99667 * 179.97438 * 14 13 11 32 32 H 1.07994 * 126.58170 * 359.95615 * 20 19 9 33 33 H 1.07997 * 126.58146 * 180.02562 * 21 20 19 34 34 H 1.08006 * 125.79154 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0054 5 6 1.9208 3.6048 -0.0012 6 6 3.3019 3.6758 -0.0065 7 6 4.0560 2.5172 -0.0057 8 6 3.4311 1.2849 -0.0002 9 6 4.2538 0.0222 0.0001 10 1 3.5911 -0.8432 0.0053 11 6 5.1278 -0.0077 1.2274 12 1 5.0915 0.8065 1.9361 13 6 5.9745 -1.0739 1.4449 14 7 6.7377 -1.0997 2.5157 15 14 6.0378 -2.4817 0.2188 16 1 7.0675 -2.1944 -0.8120 17 1 6.3842 -3.7400 0.9271 18 1 4.7121 -2.6297 -0.4338 19 6 5.1186 -0.0141 -1.2335 20 6 5.0877 -0.9613 -2.1882 21 6 6.0584 -0.6034 -3.1518 22 6 6.6240 0.5413 -2.7286 23 8 6.0467 0.8966 -1.5691 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2128 2.3203 0.0101 28 1 1.3340 4.5114 -0.0019 29 1 3.7922 4.6381 -0.0113 30 1 5.1344 2.5752 -0.0103 31 1 7.3331 -1.8500 2.6689 32 1 4.4455 -1.8292 -2.2132 33 1 6.2990 -1.1447 -4.0549 34 1 7.4063 1.0851 -3.2374 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000316733.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:53 Heat of formation + Delta-G solvation = 10.780468 kcal Electronic energy + Delta-G solvation = -19312.236075 eV Core-core repulsion = 16370.671697 eV Total energy + Delta-G solvation = -2941.564378 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.75420 -39.68136 -36.95013 -34.20477 -32.18448 -31.72908 -29.61279 -29.16315 -27.05891 -26.49719 -23.28039 -21.68164 -21.08796 -20.79470 -19.44467 -17.55536 -17.15929 -16.16573 -15.71393 -15.38375 -15.30754 -14.89847 -14.21575 -13.91061 -13.34083 -13.32544 -12.69508 -12.48187 -12.36377 -11.99645 -11.88992 -11.80886 -11.47025 -10.96646 -10.91251 -10.79063 -10.68737 -10.14833 -9.85639 -9.35731 -9.00646 -8.61278 -8.23183 -7.57943 -7.47752 -6.13885 -4.17563 1.89820 1.98161 2.63273 3.34116 3.41190 3.42606 3.49910 3.71212 3.92693 4.36647 4.42613 5.13687 5.16504 5.31644 5.35290 5.38535 5.61326 5.63197 5.65655 5.73363 5.86610 5.95862 6.06151 6.29719 6.44631 6.58020 6.60343 6.72558 6.86394 6.97534 7.04874 7.21230 7.32753 7.38167 7.58228 7.89415 8.05262 8.41814 8.88736 9.45123 10.96596 Molecular weight = 258.10amu Principal moments of inertia in cm(-1) A = 0.018124 B = 0.009131 C = 0.008312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.542203 B = 3065.807155 C = 3367.963052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.309 6.309 3 C 0.121 3.879 4 C -0.215 4.215 5 C -0.101 4.101 6 C -0.162 4.162 7 C -0.062 4.062 8 C -0.065 4.065 9 C 0.120 3.880 10 H 0.078 0.922 11 C -0.511 4.511 12 H 0.084 0.916 13 C 0.082 3.918 14 N -0.888 5.888 15 Si 0.869 3.131 16 H -0.270 1.270 17 H -0.295 1.295 18 H -0.258 1.258 19 C 0.053 3.947 20 C -0.264 4.264 21 C -0.212 4.212 22 C -0.075 4.075 23 O -0.160 6.160 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.094 0.906 27 H 0.120 0.880 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.134 0.866 31 H 0.266 0.734 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.791 4.841 -8.286 13.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.223 6.223 3 C 0.077 3.923 4 C -0.233 4.233 5 C -0.119 4.119 6 C -0.180 4.180 7 C -0.080 4.080 8 C -0.066 4.066 9 C 0.101 3.899 10 H 0.096 0.904 11 C -0.548 4.548 12 H 0.102 0.898 13 C -0.122 4.122 14 N -0.525 5.525 15 Si 0.697 3.303 16 H -0.195 1.195 17 H -0.222 1.222 18 H -0.182 1.182 19 C 0.001 3.999 20 C -0.283 4.283 21 C -0.231 4.231 22 C -0.143 4.143 23 O -0.055 6.055 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.113 0.887 27 H 0.138 0.862 28 H 0.133 0.867 29 H 0.134 0.866 30 H 0.152 0.848 31 H 0.076 0.924 32 H 0.157 0.843 33 H 0.153 0.847 34 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -8.495 4.801 -8.004 12.621 hybrid contribution 0.040 -0.926 -0.783 1.214 sum -8.455 3.875 -8.788 12.796 Atomic orbital electron populations 1.22965 0.79593 1.03346 1.00728 1.86142 1.20257 1.27017 1.88846 1.18865 0.91900 0.83906 0.97666 1.21038 0.99210 0.92495 1.10601 1.20731 0.94628 0.96397 1.00130 1.21003 0.93782 0.98202 1.04998 1.21028 1.00656 0.90678 0.95618 1.19333 0.89701 0.96395 1.01144 1.17057 0.91142 0.93120 0.88608 0.90382 1.20842 1.21846 1.07774 1.04343 0.89817 1.24961 0.94476 0.97767 0.94995 1.69876 1.24509 1.31525 1.26559 0.87051 0.80269 0.81782 0.81191 1.19489 1.22229 1.18235 1.23661 0.91180 0.88345 0.96750 1.21561 1.05835 1.03884 0.97034 1.21610 1.00910 0.98797 1.01811 1.23770 1.02559 0.99405 0.88539 1.84046 1.42250 1.44971 1.34211 0.93025 0.93267 0.88731 0.86245 0.86727 0.86577 0.84805 0.92394 0.84324 0.84678 0.79258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.31 -5.73 9.26 -19.42 -0.18 -5.91 16 3 C 0.12 2.36 6.66 -39.22 -0.26 2.10 16 4 C -0.21 -3.47 9.04 -39.43 -0.36 -3.83 16 5 C -0.10 -1.55 10.04 -39.61 -0.40 -1.94 16 6 C -0.16 -2.71 10.04 -39.56 -0.40 -3.11 16 7 C -0.06 -1.25 8.56 -39.60 -0.34 -1.59 16 8 C -0.07 -1.42 4.74 -104.48 -0.50 -1.92 16 9 C 0.12 2.93 1.93 -94.08 -0.18 2.75 16 10 H 0.08 1.96 6.01 -51.93 -0.31 1.65 16 11 C -0.51 -14.42 8.81 -34.44 -0.30 -14.72 16 12 H 0.08 2.54 7.85 -52.49 -0.41 2.13 16 13 C 0.08 2.38 5.45 -17.82 -0.10 2.29 16 14 N -0.89 -27.18 13.96 55.43 0.77 -26.41 16 15 Si 0.87 22.37 23.76 -169.99 -4.04 18.34 16 16 H -0.27 -7.03 7.00 56.52 0.40 -6.63 16 17 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 18 H -0.26 -6.28 5.20 56.52 0.29 -5.98 16 19 C 0.05 1.24 3.89 -35.62 -0.14 1.10 16 20 C -0.26 -5.81 7.55 -39.70 -0.30 -6.11 16 21 C -0.21 -4.09 10.91 -39.70 -0.43 -4.53 16 22 C -0.08 -1.42 12.09 29.42 0.36 -1.06 16 23 O -0.16 -3.60 9.39 5.71 0.05 -3.55 16 24 H 0.05 0.58 7.65 -51.93 -0.40 0.19 16 25 H 0.05 0.54 7.67 -51.93 -0.40 0.14 16 26 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.12 1.56 6.30 -52.48 -0.33 1.23 16 28 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 29 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.13 2.81 7.21 -52.49 -0.38 2.44 16 31 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 32 H 0.14 2.93 7.04 -52.49 -0.37 2.56 16 33 H 0.14 2.15 8.06 -52.49 -0.42 1.73 16 34 H 0.19 2.66 8.06 -52.48 -0.42 2.24 16 LS Contribution 283.62 15.07 4.27 4.27 Total: -1.00 -32.46 283.62 -5.43 -37.90 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -3.96 Total: 4.59 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: -2.35 Total: -29.22 kcal Atomic # 7 Polarization: -27.18 SS G_CDS: 0.77 Total: -26.41 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -0.13 Total: -9.46 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.04 Total: 18.34 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.46 -5.43 -37.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000316733.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.677 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds