Wall clock time and date at job start Sun Mar 29 2020 23:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 120.00515 * 2 1 4 4 H 1.48504 * 109.47419 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46910 * 300.00134 * 3 2 1 6 6 H 1.48499 * 109.47132 * 59.99941 * 3 2 1 7 7 C 1.37882 * 119.99657 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99858 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00154 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47234 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99945 * 180.02562 * 10 9 7 12 12 C 1.50704 * 109.46969 * 180.02562 * 11 10 9 13 13 C 1.35591 * 119.87921 * 95.01912 * 12 11 10 14 14 C 1.46412 * 118.52983 * 179.97438 * 13 12 11 15 15 C 1.39885 * 121.14721 * 179.97438 * 14 13 12 16 16 C 1.36603 * 119.71854 * 180.02562 * 15 14 13 17 17 C 1.38837 * 120.58456 * 359.95687 * 16 15 14 18 18 C 1.37809 * 120.69445 * 0.06760 * 17 16 15 19 19 C 1.39118 * 119.74172 * 359.95223 * 18 17 16 20 20 N 1.37869 * 120.96864 * 179.97438 * 19 18 17 21 21 H 0.97002 * 119.52011 * 0.04424 * 20 19 18 22 22 C 1.34450 * 120.95381 * 180.02562 * 20 19 18 23 23 O 1.21883 * 119.17938 * 179.97438 * 22 20 19 24 24 H 0.96999 * 119.99414 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47139 * 59.99664 * 9 7 2 26 26 H 1.09001 * 109.46876 * 300.00090 * 9 7 2 27 27 H 1.00900 * 111.00161 * 303.95598 * 10 9 7 28 28 H 1.08992 * 109.47347 * 60.00112 * 11 10 9 29 29 H 1.09004 * 109.46962 * 299.99769 * 11 10 9 30 30 H 1.08001 * 120.73822 * 359.97438 * 13 12 11 31 31 H 1.08000 * 120.14532 * 359.75099 * 15 14 13 32 32 H 1.08002 * 119.70633 * 179.97438 * 16 15 14 33 33 H 1.08008 * 119.65444 * 180.02562 * 17 16 15 34 34 H 1.07999 * 120.12703 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2054 -3.6158 0.0005 11 6 1.5051 -4.9071 -0.0001 12 6 2.5146 -6.0261 0.0006 13 6 2.8898 -6.5966 1.1720 14 6 3.8721 -7.6818 1.1382 15 6 4.2984 -8.3087 2.3138 16 6 5.2167 -9.3179 2.2485 17 6 5.7301 -9.7277 1.0253 18 6 5.3250 -9.1241 -0.1454 19 6 4.3911 -8.0939 -0.1035 20 7 3.9684 -7.4720 -1.2591 21 1 4.3269 -7.7575 -2.1141 22 6 3.0661 -6.4761 -1.2182 23 8 2.7156 -5.9487 -2.2596 24 1 -0.4849 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 2.8404 -3.5488 -0.7808 28 1 0.8805 -4.9813 -0.8902 29 1 0.8799 -4.9818 0.8897 30 1 2.4733 -6.2581 2.1092 31 1 3.9066 -7.9932 3.2695 32 1 5.5460 -9.8015 3.1563 33 1 6.4552 -10.5274 0.9911 34 1 5.7307 -9.4499 -1.0918 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020200213.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:00 Heat of formation + Delta-G solvation = 3.224186 kcal Electronic energy + Delta-G solvation = -17946.581273 eV Core-core repulsion = 15036.981981 eV Total energy + Delta-G solvation = -2909.599292 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.31709 -38.77845 -35.82853 -35.47371 -33.80669 -32.26174 -30.52265 -29.65950 -27.06283 -24.67820 -23.78638 -22.97587 -22.15823 -21.22776 -18.61431 -17.94983 -17.28550 -16.30821 -15.76531 -15.51694 -15.05382 -14.70115 -14.60760 -14.25721 -14.04566 -13.37603 -13.16281 -13.00684 -12.85774 -12.17107 -11.68253 -11.46116 -11.29026 -11.15488 -11.08296 -10.70611 -10.62691 -10.37952 -10.04635 -9.86008 -9.13524 -8.69580 -8.43575 -8.04736 -7.24318 -5.98249 -3.99603 0.40075 1.02449 1.73180 2.87677 3.04670 3.34927 3.41608 3.47512 3.82625 4.36425 4.40403 4.48413 4.60421 4.69437 4.97258 5.01453 5.12541 5.37768 5.52696 5.55566 5.58345 5.72339 5.78776 6.04780 6.13589 6.19889 6.33519 6.42532 6.56570 6.66988 6.98340 7.28490 7.49950 7.83099 8.02580 8.16925 8.43257 8.65012 9.09527 9.64753 11.13061 Molecular weight = 258.11amu Principal moments of inertia in cm(-1) A = 0.033676 B = 0.003966 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.248765 B = 7058.647479 C = 7304.322623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.683 5.683 11 C 0.110 3.890 12 C -0.160 4.160 13 C -0.020 4.020 14 C -0.120 4.120 15 C -0.057 4.057 16 C -0.154 4.154 17 C -0.073 4.073 18 C -0.165 4.165 19 C 0.180 3.820 20 N -0.634 5.634 21 H 0.412 0.588 22 C 0.539 3.461 23 O -0.529 6.529 24 H 0.260 0.740 25 H -0.011 1.011 26 H 0.029 0.971 27 H 0.332 0.668 28 H 0.040 0.960 29 H 0.077 0.923 30 H 0.147 0.853 31 H 0.135 0.865 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.170 -22.017 3.917 24.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.313 5.313 11 C -0.020 4.020 12 C -0.164 4.164 13 C -0.041 4.041 14 C -0.123 4.123 15 C -0.075 4.075 16 C -0.173 4.173 17 C -0.092 4.092 18 C -0.186 4.186 19 C 0.077 3.923 20 N -0.272 5.272 21 H 0.250 0.750 22 C 0.335 3.665 23 O -0.407 6.407 24 H 0.070 0.930 25 H 0.007 0.993 26 H 0.047 0.953 27 H 0.148 0.852 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.165 0.835 31 H 0.153 0.847 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.749 -21.428 4.093 23.895 hybrid contribution 0.315 0.705 -1.258 1.476 sum 10.063 -20.723 2.835 23.211 Atomic orbital electron populations 1.69977 1.06061 1.26617 1.51130 1.24989 0.94890 0.99346 0.95412 0.86419 0.80067 0.83329 0.77461 1.19676 1.21099 1.21001 1.21218 0.93556 0.90191 1.50037 0.91948 1.19590 0.90658 0.87216 0.95926 1.60872 1.20996 1.00431 1.49022 1.20626 0.92490 0.87761 1.01116 1.20998 1.02707 1.00981 0.91668 1.22507 0.91880 0.90945 0.98771 1.18757 1.01482 1.00062 0.91996 1.20913 0.95381 0.94225 0.96986 1.20797 0.99375 0.99128 0.98039 1.21056 0.98065 0.98343 0.91775 1.20711 1.00120 0.98022 0.99731 1.17993 0.94864 0.93340 0.86053 1.43481 1.40802 1.33941 1.08952 0.75015 1.17081 0.79153 0.79205 0.91067 1.90969 1.59829 1.55200 1.34714 0.93003 0.99323 0.95281 0.85153 0.94239 0.90441 0.83526 0.84718 0.85525 0.85411 0.85168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.51 -15.10 9.32 -34.44 -0.32 -15.42 16 8 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 9 C 0.19 5.30 5.44 -4.98 -0.03 5.27 16 10 N -0.68 -15.82 6.48 -116.34 -0.75 -16.57 16 11 C 0.11 2.13 5.51 -4.97 -0.03 2.10 16 12 C -0.16 -2.62 5.40 -104.47 -0.56 -3.18 16 13 C -0.02 -0.26 9.70 -37.24 -0.36 -0.62 16 14 C -0.12 -1.37 5.87 -105.04 -0.62 -1.99 16 15 C -0.06 -0.50 9.79 -39.56 -0.39 -0.88 16 16 C -0.15 -1.13 9.97 -39.95 -0.40 -1.53 16 17 C -0.07 -0.52 10.01 -39.52 -0.40 -0.92 16 18 C -0.17 -1.37 9.92 -39.41 -0.39 -1.76 16 19 C 0.18 2.00 6.65 -83.88 -0.56 1.44 16 20 N -0.63 -7.93 5.30 -12.61 -0.07 -7.99 16 21 H 0.41 4.16 8.77 -40.82 -0.36 3.80 16 22 C 0.54 8.98 7.65 -15.30 -0.12 8.86 16 23 O -0.53 -10.72 17.00 5.02 0.09 -10.63 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H -0.01 -0.33 8.14 -51.93 -0.42 -0.75 16 26 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.33 7.89 8.71 -39.29 -0.34 7.55 16 28 H 0.04 0.83 7.71 -51.93 -0.40 0.42 16 29 H 0.08 1.38 8.04 -51.93 -0.42 0.96 16 30 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 34 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 299.53 15.07 4.51 4.51 Total: -1.00 -34.46 299.53 -8.79 -43.25 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -4.02 Total: 4.06 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -4.26 Total: -7.11 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.08 Total: -51.37 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.46 -8.79 -43.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020200213.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.474 kcal (2) G-P(sol) polarization free energy of solvation -34.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds