Wall clock time and date at job start Mon Mar 30 2020 00:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81405 * 102.99913 * 2 1 4 4 C 1.50693 * 109.47193 * 180.02562 * 3 2 1 5 5 O 1.21285 * 119.99666 * 359.97438 * 4 3 2 6 6 N 1.34771 * 119.99950 * 180.02562 * 4 3 2 7 7 C 1.47425 * 125.65189 * 359.96495 * 6 4 3 8 8 C 1.54906 * 104.83815 * 204.15389 * 7 6 4 9 9 C 1.55157 * 101.57850 * 322.99441 * 8 7 6 10 10 H 1.09003 * 110.72490 * 277.13366 * 9 8 7 11 11 N 1.46505 * 110.71973 * 153.86334 * 9 8 7 12 12 C 1.36933 * 119.99900 * 91.47408 * 11 9 8 13 13 H 1.08001 * 120.00575 * 0.02562 * 12 11 9 14 14 C 1.38820 * 120.00046 * 180.02562 * 12 11 9 15 15 N 1.31624 * 119.99517 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00093 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47444 * 60.00070 * 16 14 12 18 18 H 1.48503 * 109.47151 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47187 * 299.99980 * 16 14 12 20 20 C 1.47027 * 125.64733 * 180.02562 * 6 4 3 21 21 H 1.09002 * 109.88429 * 59.49757 * 20 6 4 22 22 C 1.53005 * 110.00938 * 298.40164 * 20 6 4 23 23 H 1.09001 * 109.46684 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47055 * 299.99531 * 1 2 3 25 25 H 1.08996 * 109.46998 * 59.99741 * 1 2 3 26 26 H 1.09001 * 109.46891 * 59.99777 * 3 2 1 27 27 H 1.08998 * 109.46988 * 300.00386 * 3 2 1 28 28 H 1.09009 * 110.35863 * 85.31658 * 7 6 4 29 29 H 1.09001 * 110.45922 * 323.04922 * 7 6 4 30 30 H 1.08994 * 111.00476 * 204.92106 * 8 7 6 31 31 H 1.09001 * 110.99920 * 81.06228 * 8 7 6 32 32 H 0.97000 * 120.00109 * 271.47584 * 11 9 8 33 33 H 0.97002 * 119.99392 * 180.02562 * 15 14 12 34 34 H 1.08994 * 109.47215 * 301.80506 * 22 20 6 35 35 H 1.09001 * 109.46642 * 61.80009 * 22 20 6 36 36 H 1.09002 * 109.46991 * 181.80028 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7194 1.9374 -0.0006 5 8 4.4403 0.9621 -0.0006 6 7 4.2574 3.1731 -0.0002 7 6 3.5021 4.4392 0.0001 8 6 4.4722 5.4801 -0.6122 9 6 5.8334 5.0186 -0.0279 10 1 5.9737 5.4110 0.9794 11 7 6.9370 5.4242 -0.9020 12 6 7.5654 6.6238 -0.6995 13 1 7.2478 7.2709 0.1048 14 6 8.6107 7.0084 -1.5281 15 7 8.9980 6.2196 -2.5080 16 14 9.4684 8.6446 -1.2515 17 1 10.0620 8.6685 0.1095 18 1 10.5415 8.8182 -2.2632 19 1 8.4832 9.7481 -1.3812 20 6 5.6949 3.4818 -0.0013 21 1 6.1658 3.0516 -0.8852 22 6 6.3515 2.9223 1.2624 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8031 2.2371 0.8900 27 1 1.8031 2.2371 -0.8899 28 1 3.2360 4.7218 1.0187 29 1 2.6060 4.3484 -0.6139 30 1 4.2253 6.4879 -0.2786 31 1 4.4737 5.4197 -1.7006 32 1 7.2225 4.8429 -1.6242 33 1 9.7287 6.4881 -3.0867 34 1 5.8676 3.3470 2.1418 35 1 6.2448 1.8376 1.2773 36 1 7.4097 3.1835 1.2681 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985946708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:20 Heat of formation + Delta-G solvation = -19.110498 kcal Electronic energy + Delta-G solvation = -17408.083642 eV Core-core repulsion = 14632.959797 eV Total energy + Delta-G solvation = -2775.123846 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 258.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.97912 -37.44892 -34.17629 -32.02102 -31.00395 -30.16414 -29.13517 -28.36357 -25.24643 -23.10800 -22.58353 -20.26698 -18.95084 -17.33157 -16.95036 -16.48590 -16.02581 -15.17433 -14.79391 -14.30626 -13.93574 -13.76128 -13.65778 -13.42897 -13.06447 -12.82511 -12.62732 -12.44205 -12.07313 -11.86346 -11.65276 -11.19375 -11.05401 -10.85853 -10.62452 -10.30071 -10.14450 -10.07624 -9.82262 -9.66554 -8.97446 -8.47377 -7.81078 -7.07046 -5.84231 -3.15090 1.30526 2.36650 2.67700 3.11941 3.39661 3.44481 3.45620 4.44309 4.52271 4.79334 4.87217 4.89219 4.94706 5.03277 5.20203 5.30439 5.43624 5.44474 5.53287 5.63400 5.76132 5.90282 6.05521 6.09337 6.25465 6.42283 6.54108 6.59547 6.68761 6.87233 7.62020 7.66280 8.23438 8.32988 9.44330 9.98366 10.33089 11.37759 Molecular weight = 258.11amu Principal moments of inertia in cm(-1) A = 0.050964 B = 0.004048 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.274404 B = 6915.225035 C = 7095.030840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.187 6.187 3 C -0.121 4.121 4 C 0.542 3.458 5 O -0.522 6.522 6 N -0.606 5.606 7 C 0.097 3.903 8 C -0.157 4.157 9 C 0.177 3.823 10 H 0.068 0.932 11 N -0.713 5.713 12 C -0.247 4.247 13 H 0.072 0.928 14 C -0.009 4.009 15 N -0.929 5.929 16 Si 0.909 3.091 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.285 1.285 20 C 0.127 3.873 21 H 0.078 0.922 22 C -0.154 4.154 23 H 0.103 0.897 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.386 0.614 33 H 0.257 0.743 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.178 -6.541 6.048 19.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.038 5.962 3 C -0.272 4.272 4 C 0.328 3.672 5 O -0.398 6.398 6 N -0.341 5.341 7 C -0.027 4.027 8 C -0.198 4.198 9 C 0.065 3.935 10 H 0.086 0.914 11 N -0.353 5.353 12 C -0.378 4.378 13 H 0.090 0.910 14 C -0.206 4.206 15 N -0.577 5.577 16 Si 0.740 3.260 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.212 1.212 20 C 0.023 3.977 21 H 0.096 0.904 22 C -0.212 4.212 23 H 0.121 0.879 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.221 0.779 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.034 -7.837 6.084 18.855 hybrid contribution -0.464 1.953 -0.198 2.017 sum -16.498 -5.885 5.886 18.478 Atomic orbital electron populations 1.23528 0.96198 1.06602 1.04780 1.87543 1.04150 1.06541 1.97998 1.23511 0.98125 0.98744 1.06822 1.19187 0.88432 0.82302 0.77303 1.90736 1.61896 1.37711 1.49495 1.48479 1.08440 1.04791 1.72347 1.22416 0.95511 0.84132 1.00598 1.23585 0.97192 0.97477 1.01532 1.21240 0.88056 0.89083 0.95127 0.91388 1.42341 1.36333 1.21559 1.35114 1.19168 1.11496 0.95069 1.12039 0.91017 1.24776 0.99116 0.98669 0.98003 1.69659 1.30744 1.37230 1.20032 0.86247 0.79129 0.83418 0.77226 1.21154 1.21658 1.21198 1.21997 0.79025 0.97537 0.99128 0.90370 1.22040 1.01241 1.01495 0.96451 0.87860 0.90598 0.90561 0.87473 0.87424 0.91576 0.91452 0.90461 0.90603 0.77938 0.93269 0.93127 0.91957 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 10.76 101.05 1.09 0.05 16 2 S -0.19 -2.26 21.52 -107.50 -2.31 -4.58 16 3 C -0.12 -1.35 5.43 36.00 0.20 -1.15 16 4 C 0.54 8.39 7.66 -10.99 -0.08 8.31 16 5 O -0.52 -10.09 14.91 5.55 0.08 -10.00 16 6 N -0.61 -9.16 3.07 -163.01 -0.50 -9.66 16 7 C 0.10 1.19 6.69 -2.53 -0.02 1.17 16 8 C -0.16 -2.45 6.77 -24.58 -0.17 -2.61 16 9 C 0.18 3.31 3.14 -66.09 -0.21 3.10 16 10 H 0.07 1.27 7.80 -51.93 -0.41 0.87 16 11 N -0.71 -17.09 5.22 -51.65 -0.27 -17.36 16 12 C -0.25 -6.54 9.96 -15.06 -0.15 -6.69 16 13 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 14 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 15 N -0.93 -27.45 13.06 55.49 0.72 -26.72 16 16 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 C 0.13 2.24 3.20 -66.95 -0.21 2.02 16 21 H 0.08 1.57 7.72 -51.93 -0.40 1.17 16 22 C -0.15 -2.60 9.11 37.16 0.34 -2.26 16 23 H 0.10 0.65 8.14 -51.92 -0.42 0.22 16 24 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.11 0.95 8.14 -51.92 -0.42 0.53 16 27 H 0.11 1.00 7.85 -51.93 -0.41 0.59 16 28 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 29 H 0.07 0.67 7.48 -51.93 -0.39 0.28 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.39 10.04 7.56 -40.82 -0.31 9.73 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 1.10 6.90 -51.93 -0.36 0.74 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 311.60 15.07 4.70 4.70 Total: -1.00 -31.28 311.60 -7.54 -38.81 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.62 Total: 6.51 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 0.69 Total: 1.59 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.05 Total: -53.74 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -2.26 SS G_CDS: -2.31 Total: -4.58 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.28 -7.54 -38.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985946708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.704 kcal (2) G-P(sol) polarization free energy of solvation -31.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds