Wall clock time and date at job start Sun Mar 29 2020 23:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38341 * 119.92094 * 2 1 4 4 C 1.38041 * 120.08732 * 180.02562 * 3 2 1 5 5 C 1.39045 * 119.91520 * 359.97438 * 4 3 2 6 6 N 1.39563 * 120.08419 * 179.97438 * 5 4 3 7 7 C 1.36966 * 119.99731 * 269.99796 * 6 5 4 8 8 H 1.08001 * 120.00231 * 186.91400 * 7 6 5 9 9 C 1.38720 * 120.00222 * 6.92319 * 7 6 5 10 10 N 1.31576 * 120.00222 * 9.47857 * 9 7 6 11 11 Si 1.86802 * 120.00402 * 189.47902 * 9 7 6 12 12 H 1.48501 * 109.47219 * 89.99516 * 11 9 7 13 13 H 1.48494 * 109.47419 * 209.99793 * 11 9 7 14 14 H 1.48505 * 109.46884 * 330.00024 * 11 9 7 15 15 C 1.38392 * 120.00153 * 89.99970 * 6 5 4 16 16 N 1.31638 * 126.08130 * 354.53502 * 15 6 5 17 17 C 1.33185 * 109.73001 * 180.26311 * 16 15 6 18 18 N 1.30713 * 109.14963 * 0.02562 * 17 16 15 19 19 N 1.35107 * 126.08168 * 174.84464 * 15 6 5 20 20 H 0.96993 * 126.84640 * 359.77622 * 19 15 6 21 21 C 1.39009 * 119.83063 * 0.25699 * 5 4 3 22 22 C 1.50704 * 120.04087 * 179.72398 * 21 5 4 23 23 C 1.38088 * 119.91549 * 359.51043 * 21 5 4 24 24 H 1.08998 * 109.47197 * 89.99905 * 1 2 3 25 25 H 1.09000 * 109.47338 * 210.00299 * 1 2 3 26 26 H 1.09007 * 109.46683 * 330.00092 * 1 2 3 27 27 H 1.08005 * 119.95378 * 359.97438 * 3 2 1 28 28 H 1.08003 * 120.04195 * 179.97438 * 4 3 2 29 29 H 0.96996 * 120.00805 * 175.00478 * 10 9 7 30 30 H 1.08005 * 125.42196 * 179.97438 * 17 16 15 31 31 H 1.09005 * 109.46684 * 90.00282 * 22 21 5 32 32 H 1.09001 * 109.46920 * 209.99883 * 22 21 5 33 33 H 1.08995 * 109.47138 * 329.99866 * 22 21 5 34 34 H 1.07998 * 119.95898 * 180.24961 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1990 0.0000 4 6 3.5774 1.2030 -0.0005 5 6 4.2744 -0.0001 -0.0005 6 7 5.6700 -0.0002 -0.0016 7 6 6.3539 -0.0008 -1.1883 8 1 7.4280 -0.1135 -1.1926 9 6 5.6669 0.1434 -2.3848 10 7 4.3914 0.4662 -2.3764 11 14 6.5527 -0.1205 -4.0082 12 1 6.4443 -1.5474 -4.4049 13 1 5.9337 0.7325 -5.0543 14 1 7.9843 0.2435 -3.8558 15 6 6.3629 0.0003 1.1963 16 7 5.8344 0.1022 2.3976 17 6 6.7978 0.0726 3.3167 18 7 7.9551 -0.0478 2.7211 19 7 7.7027 -0.0978 1.3407 20 1 8.3592 -0.1845 0.6320 21 6 3.5775 -1.2029 -0.0054 22 6 4.3281 -2.5097 -0.0117 23 6 2.1966 -1.1988 0.0000 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5139 27 1 1.6550 2.1332 -0.0004 28 1 4.1154 2.1395 -0.0010 29 1 3.9289 0.6380 -3.2115 30 1 6.6469 0.1385 4.3842 31 1 4.5097 -2.8293 1.0145 32 1 3.7369 -3.2658 -0.5285 33 1 5.2804 -2.3793 -0.5256 34 1 1.6545 -2.1329 0.0003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000987891.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:07 Heat of formation + Delta-G solvation = 129.527995 kcal Electronic energy + Delta-G solvation = -19432.385273 eV Core-core repulsion = 16560.555676 eV Total energy + Delta-G solvation = -2871.829597 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.118 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.83710 -38.79945 -35.96072 -32.33871 -31.91214 -31.33425 -30.62385 -28.82602 -26.38573 -25.95543 -24.32665 -21.55818 -21.35603 -20.44365 -19.18041 -18.12182 -17.17147 -15.42456 -15.14404 -14.86535 -14.13180 -14.09237 -13.91473 -13.44203 -13.12891 -12.95244 -12.44690 -12.23593 -11.98523 -11.68870 -11.36376 -11.27075 -11.14006 -10.96071 -10.68116 -10.55076 -10.48032 -10.16406 -9.78331 -9.15446 -8.98137 -8.87460 -7.72747 -7.46633 -7.35859 -6.14981 -4.03071 2.45800 2.56824 2.79842 3.08247 3.09839 3.13012 3.44947 3.97581 4.08864 4.69614 4.82156 4.95038 5.55115 5.61996 5.68637 5.92609 5.95075 6.04445 6.10221 6.14364 6.29868 6.40874 6.44321 6.67669 6.77703 6.88934 7.05730 7.22110 7.26324 7.39201 7.48554 7.56574 7.66156 7.82742 8.00171 8.03085 8.52355 9.00567 9.17545 9.57857 10.53000 Molecular weight = 258.12amu Principal moments of inertia in cm(-1) A = 0.013821 B = 0.011633 C = 0.007354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.437235 B = 2406.347160 C = 3806.387958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.109 4.109 3 C -0.126 4.126 4 C -0.050 4.050 5 C 0.261 3.739 6 N -0.395 5.395 7 C -0.335 4.335 8 H 0.094 0.906 9 C 0.041 3.959 10 N -0.848 5.848 11 Si 0.928 3.072 12 H -0.276 1.276 13 H -0.281 1.281 14 H -0.272 1.272 15 C 0.522 3.478 16 N -0.612 5.612 17 C 0.219 3.781 18 N -0.374 5.374 19 N -0.528 5.528 20 H 0.429 0.571 21 C -0.080 4.080 22 C -0.102 4.102 23 C -0.122 4.122 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.272 0.728 30 H 0.199 0.801 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.200 -1.459 1.761 3.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.109 4.109 3 C -0.145 4.145 4 C -0.070 4.070 5 C 0.170 3.830 6 N -0.100 5.100 7 C -0.462 4.462 8 H 0.112 0.888 9 C -0.166 4.166 10 N -0.484 5.484 11 Si 0.755 3.245 12 H -0.202 1.202 13 H -0.206 1.206 14 H -0.197 1.197 15 C 0.162 3.838 16 N -0.357 5.357 17 C -0.085 4.085 18 N -0.208 5.208 19 N -0.253 5.253 20 H 0.273 0.727 21 C -0.083 4.083 22 C -0.158 4.158 23 C -0.141 4.141 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.121 0.879 28 H 0.119 0.881 29 H 0.084 0.916 30 H 0.216 0.784 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.148 -1.475 1.896 3.959 hybrid contribution 0.775 -0.027 -1.699 1.868 sum -2.372 -1.502 0.197 2.814 Atomic orbital electron populations 1.20632 0.92785 1.01337 1.01069 1.19470 0.94551 0.93352 1.03523 1.20444 0.93671 0.96252 1.04120 1.20759 0.93278 0.96828 0.96181 1.16459 0.80507 0.91790 0.94253 1.38762 1.02080 1.69788 0.99348 1.19314 0.92308 1.53208 0.81335 0.88810 1.25139 0.95896 0.96360 0.99234 1.70068 1.08244 1.42361 1.27700 0.85901 0.79015 0.78547 0.81073 1.20168 1.20639 1.19662 1.20292 0.81272 0.94058 0.88178 1.70666 1.31750 1.37016 0.96227 1.25363 0.86199 0.97066 0.99921 1.77742 1.22932 1.33872 0.86231 1.47269 1.05755 1.65981 1.06292 0.72713 1.19716 0.93216 0.94396 1.00935 1.20574 1.00631 0.94065 1.00570 1.20344 0.92921 0.96393 1.04464 0.92390 0.92676 0.92581 0.87934 0.88057 0.91601 0.78408 0.92945 0.93209 0.91050 0.87906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.49 10.01 36.00 0.36 -1.13 16 2 C -0.11 -2.07 5.88 -104.56 -0.62 -2.69 16 3 C -0.13 -2.55 9.69 -39.62 -0.38 -2.94 16 4 C -0.05 -1.16 8.26 -39.35 -0.32 -1.48 16 5 C 0.26 6.18 2.62 -83.75 -0.22 5.96 16 6 N -0.40 -9.47 1.88 -60.66 -0.11 -9.59 16 7 C -0.33 -8.03 9.00 -15.08 -0.14 -8.17 16 8 H 0.09 2.11 6.69 -52.49 -0.35 1.76 16 9 C 0.04 0.98 5.37 -17.48 -0.09 0.88 16 10 N -0.85 -20.98 9.48 55.48 0.53 -20.46 16 11 Si 0.93 18.90 29.57 -169.99 -5.03 13.87 16 12 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 13 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 14 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 15 C 0.52 12.15 8.27 -320.47 -2.65 9.50 16 16 N -0.61 -13.99 10.83 -15.16 -0.16 -14.16 16 17 C 0.22 4.36 13.02 -91.86 -1.20 3.16 16 18 N -0.37 -7.74 12.78 29.28 0.37 -7.37 16 19 N -0.53 -11.23 7.26 30.08 0.22 -11.01 16 20 H 0.43 8.20 7.83 -182.36 -1.43 6.78 16 21 C -0.08 -1.79 5.74 -104.39 -0.60 -2.39 16 22 C -0.10 -2.08 9.77 36.01 0.35 -1.73 16 23 C -0.12 -2.46 9.35 -39.61 -0.37 -2.83 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 26 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 27 H 0.10 1.82 8.06 -52.48 -0.42 1.40 16 28 H 0.10 2.41 8.06 -52.48 -0.42 1.98 16 29 H 0.27 6.57 8.32 -40.82 -0.34 6.23 16 30 H 0.20 3.00 8.06 -52.48 -0.42 2.58 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.90 8.09 -51.93 -0.42 0.48 16 33 H 0.07 1.59 6.91 -51.93 -0.36 1.23 16 34 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 292.60 15.07 4.41 4.41 Total: -1.00 -27.62 292.60 -10.72 -38.34 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -5.07 Total: 9.80 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -5.88 Total: -3.85 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: 0.84 Total: -62.58 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.62 -10.72 -38.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000987891.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.873 kcal (2) G-P(sol) polarization free energy of solvation -27.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds