Wall clock time and date at job start Sun Mar 29 2020 23:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47138 * 2 1 4 4 C 1.36913 * 119.99554 * 278.30349 * 3 2 1 5 5 H 1.07997 * 119.99821 * 171.19555 * 4 3 2 6 6 C 1.39019 * 120.00198 * 351.19553 * 4 3 2 7 7 N 1.31380 * 120.00070 * 30.59042 * 6 4 3 8 8 Si 1.86800 * 120.00075 * 210.58861 * 6 4 3 9 9 H 1.48503 * 109.47107 * 94.99615 * 8 6 4 10 10 H 1.48496 * 109.47412 * 214.99671 * 8 6 4 11 11 H 1.48506 * 109.47002 * 334.99954 * 8 6 4 12 12 C 1.34774 * 120.00584 * 98.30193 * 3 2 1 13 13 O 1.21607 * 120.00237 * 184.91912 * 12 3 2 14 14 C 1.47553 * 119.99590 * 4.92642 * 12 3 2 15 15 C 1.40263 * 119.98033 * 132.37746 * 14 12 3 16 16 C 1.36298 * 120.66114 * 179.97438 * 15 14 12 17 17 C 1.39385 * 120.24893 * 359.97438 * 16 15 14 18 18 N 1.37406 * 133.23922 * 180.02562 * 17 16 15 19 19 H 0.97000 * 125.00989 * 359.95974 * 18 17 16 20 20 C 1.36860 * 109.97841 * 180.22417 * 18 17 16 21 21 C 1.34189 * 109.96154 * 359.61396 * 20 18 17 22 22 C 1.40875 * 119.65133 * 0.02562 * 17 16 15 23 23 C 1.39222 * 119.97913 * 312.35665 * 14 12 3 24 24 H 1.08996 * 109.47138 * 191.13497 * 1 2 3 25 25 H 1.08997 * 109.47315 * 311.13945 * 1 2 3 26 26 H 1.09006 * 109.46923 * 71.13364 * 1 2 3 27 27 H 1.08994 * 109.47276 * 239.99506 * 2 1 3 28 28 H 1.09001 * 109.46986 * 119.99745 * 2 1 3 29 29 H 0.96999 * 119.99977 * 180.02562 * 7 6 4 30 30 H 1.07994 * 119.66655 * 359.95198 * 15 14 12 31 31 H 1.08005 * 119.87469 * 179.97438 * 16 15 14 32 32 H 1.08001 * 125.02014 * 179.72948 * 20 18 17 33 33 H 1.08003 * 126.54068 * 180.12891 * 21 20 18 34 34 H 1.08000 * 120.30477 * 359.97438 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0850 2.0836 -1.1733 5 1 2.3075 3.1403 -1.1581 6 6 1.8663 1.4367 -2.3842 7 7 1.0535 0.4060 -2.4410 8 14 2.7281 2.0327 -3.9306 9 1 3.9700 1.2457 -4.1398 10 1 1.8279 1.8564 -5.0983 11 1 3.0718 3.4699 -3.7831 12 6 2.4018 1.9605 1.1549 13 8 2.7221 3.1335 1.1698 14 6 2.4333 1.1712 2.4012 15 6 3.5585 1.2254 3.2369 16 6 3.6021 0.5025 4.3916 17 6 2.5244 -0.3021 4.7574 18 7 2.2849 -1.1228 5.8331 19 1 2.9011 -1.2722 6.5672 20 6 1.0511 -1.7028 5.7132 21 6 0.4552 -1.2833 4.5864 22 6 1.3883 -0.3654 3.9268 23 6 1.3460 0.3735 2.7471 24 1 -0.3633 -1.0083 0.1985 25 1 -0.3634 0.6761 0.7739 26 1 -0.3633 0.3323 -0.9725 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.9013 -0.0456 -3.2858 30 1 4.3987 1.8458 2.9625 31 1 4.4751 0.5534 5.0254 32 1 0.6199 -2.3945 6.4217 33 1 -0.5234 -1.5705 4.2312 34 1 0.4771 0.3292 2.1071 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107568708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:59 Heat of formation + Delta-G solvation = 50.741451 kcal Electronic energy + Delta-G solvation = -18981.438705 eV Core-core repulsion = 16073.899916 eV Total energy + Delta-G solvation = -2907.538789 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.111 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.96872 -38.73717 -36.03080 -35.00894 -32.15393 -31.42287 -29.56768 -29.09382 -28.41254 -25.12377 -22.85355 -22.14447 -21.63957 -20.61967 -18.98736 -17.80289 -16.78300 -16.29968 -15.72641 -14.78017 -14.32455 -14.22739 -13.95600 -13.89192 -13.31332 -13.06288 -12.91727 -12.47202 -12.26280 -11.91811 -11.73695 -11.18477 -11.09824 -11.06043 -10.70990 -10.43879 -10.27251 -10.08762 -9.83972 -9.40173 -8.69374 -8.38410 -7.85000 -7.81242 -7.39589 -6.39699 -3.70254 1.46300 1.81102 2.92616 3.17774 3.27924 3.28827 3.34700 3.87080 4.13205 4.43150 4.88455 4.93383 5.06327 5.14122 5.35855 5.57419 5.65005 5.83735 5.88820 6.10888 6.22022 6.30142 6.43821 6.63100 6.71837 6.75097 6.86333 6.90960 7.00402 7.10173 7.35626 7.44942 7.52087 7.66834 7.85473 8.14282 8.54995 9.21026 9.46848 10.06201 10.57871 Molecular weight = 258.11amu Principal moments of inertia in cm(-1) A = 0.034311 B = 0.005924 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.865752 B = 4725.585143 C = 5274.416688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.109 3.891 3 N -0.429 5.429 4 C -0.308 4.308 5 H 0.108 0.892 6 C 0.037 3.963 7 N -0.852 5.852 8 Si 0.913 3.087 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.474 3.526 13 O -0.595 6.595 14 C -0.116 4.116 15 C -0.055 4.055 16 C -0.144 4.144 17 C 0.096 3.904 18 N -0.599 5.599 19 H 0.411 0.589 20 C 0.035 3.965 21 C -0.196 4.196 22 C -0.117 4.117 23 C -0.058 4.058 24 H 0.035 0.965 25 H 0.029 0.971 26 H 0.102 0.898 27 H 0.098 0.902 28 H 0.045 0.955 29 H 0.268 0.732 30 H 0.128 0.872 31 H 0.117 0.883 32 H 0.166 0.834 33 H 0.145 0.855 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.155 -7.927 12.204 14.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.014 4.014 3 N -0.146 5.146 4 C -0.436 4.436 5 H 0.125 0.875 6 C -0.167 4.167 7 N -0.491 5.491 8 Si 0.739 3.261 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.192 1.192 12 C 0.264 3.736 13 O -0.482 6.482 14 C -0.121 4.121 15 C -0.075 4.075 16 C -0.165 4.165 17 C -0.011 4.011 18 N -0.203 5.203 19 H 0.247 0.753 20 C -0.090 4.090 21 C -0.222 4.222 22 C -0.121 4.121 23 C -0.077 4.077 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.120 0.880 27 H 0.116 0.884 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.146 0.854 31 H 0.135 0.865 32 H 0.183 0.817 33 H 0.162 0.838 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.263 -7.534 12.111 14.265 hybrid contribution 0.532 -0.093 -0.346 0.641 sum 0.795 -7.626 11.765 14.043 Atomic orbital electron populations 1.22335 0.96593 0.98439 1.03843 1.21807 0.94731 0.83626 1.01232 1.43782 1.52835 1.11886 1.06067 1.19720 1.46180 0.95694 0.81963 0.87467 1.25234 0.95762 0.96429 0.99295 1.70140 1.29203 1.22804 1.26913 0.86125 0.79728 0.79674 0.80553 1.20389 1.21169 1.19243 1.17705 0.85754 0.87228 0.82939 1.90596 1.55767 1.16187 1.85650 1.19971 0.95188 0.99521 0.97370 1.20554 0.97526 0.96940 0.92508 1.19566 0.97111 1.00763 0.99058 1.18352 0.96980 0.96425 0.89387 1.41665 1.16789 1.40583 1.21226 0.75324 1.21680 0.86188 1.01081 1.00073 1.21720 1.00520 1.03161 0.96753 1.19148 0.94785 1.01888 0.96316 1.21371 0.98796 0.93190 0.94331 0.94601 0.95216 0.87958 0.88373 0.93679 0.92170 0.85403 0.86535 0.81711 0.83769 0.84086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 8.73 37.16 0.32 -2.99 16 2 C 0.11 2.53 4.89 -4.04 -0.02 2.51 16 3 N -0.43 -11.28 2.64 -115.99 -0.31 -11.59 16 4 C -0.31 -8.62 9.34 -14.99 -0.14 -8.76 16 5 H 0.11 3.19 7.34 -52.49 -0.39 2.80 16 6 C 0.04 0.95 5.06 -17.46 -0.09 0.86 16 7 N -0.85 -21.44 8.06 55.50 0.45 -20.99 16 8 Si 0.91 20.38 29.65 -169.99 -5.04 15.34 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 12 C 0.47 12.38 7.18 -12.46 -0.09 12.29 16 13 O -0.60 -17.49 16.61 5.27 0.09 -17.40 16 14 C -0.12 -2.51 5.00 -104.97 -0.52 -3.04 16 15 C -0.06 -1.04 9.62 -39.52 -0.38 -1.42 16 16 C -0.14 -2.25 10.00 -39.85 -0.40 -2.65 16 17 C 0.10 1.48 7.27 -83.94 -0.61 0.87 16 18 N -0.60 -6.86 6.05 -10.60 -0.06 -6.92 16 19 H 0.41 3.24 8.96 -40.82 -0.37 2.87 16 20 C 0.04 0.38 11.81 -16.73 -0.20 0.18 16 21 C -0.20 -2.68 11.09 -37.65 -0.42 -3.09 16 22 C -0.12 -2.00 6.36 -105.16 -0.67 -2.67 16 23 C -0.06 -1.13 7.50 -38.83 -0.29 -1.42 16 24 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.03 0.62 6.30 -51.93 -0.33 0.30 16 26 H 0.10 2.45 5.89 -51.93 -0.31 2.14 16 27 H 0.10 2.42 5.90 -51.93 -0.31 2.11 16 28 H 0.05 0.97 5.19 -51.93 -0.27 0.70 16 29 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 30 H 0.13 2.34 8.06 -52.49 -0.42 1.92 16 31 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 32 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.14 1.69 8.06 -52.48 -0.42 1.27 16 34 H 0.14 2.78 3.96 -52.49 -0.21 2.57 16 LS Contribution 280.40 15.07 4.23 4.23 Total: -1.00 -31.78 280.40 -7.57 -39.34 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -3.42 Total: 7.31 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -3.50 Total: -9.32 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.08 Total: -39.50 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.09 Total: -17.40 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.04 Total: 15.34 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.78 -7.57 -39.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107568708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.084 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds