Wall clock time and date at job start Sun Mar 29 2020 23:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47138 * 2 1 4 4 C 1.36913 * 119.99554 * 278.30349 * 3 2 1 5 5 H 1.07997 * 119.99821 * 171.19555 * 4 3 2 6 6 C 1.39019 * 120.00198 * 351.19553 * 4 3 2 7 7 N 1.31380 * 120.00070 * 30.59042 * 6 4 3 8 8 Si 1.86800 * 120.00075 * 210.58861 * 6 4 3 9 9 H 1.48503 * 109.47107 * 94.99615 * 8 6 4 10 10 H 1.48496 * 109.47412 * 214.99671 * 8 6 4 11 11 H 1.48506 * 109.47002 * 334.99954 * 8 6 4 12 12 C 1.34774 * 120.00584 * 98.30193 * 3 2 1 13 13 O 1.21607 * 120.00237 * 184.91912 * 12 3 2 14 14 C 1.47553 * 119.99590 * 4.92642 * 12 3 2 15 15 C 1.40263 * 119.98033 * 132.37746 * 14 12 3 16 16 C 1.36298 * 120.66114 * 179.97438 * 15 14 12 17 17 C 1.39385 * 120.24893 * 359.97438 * 16 15 14 18 18 N 1.37406 * 133.23922 * 180.02562 * 17 16 15 19 19 H 0.97000 * 125.00989 * 359.95974 * 18 17 16 20 20 C 1.36860 * 109.97841 * 180.22417 * 18 17 16 21 21 C 1.34189 * 109.96154 * 359.61396 * 20 18 17 22 22 C 1.40875 * 119.65133 * 0.02562 * 17 16 15 23 23 C 1.39222 * 119.97913 * 312.35665 * 14 12 3 24 24 H 1.08996 * 109.47138 * 191.13497 * 1 2 3 25 25 H 1.08997 * 109.47315 * 311.13945 * 1 2 3 26 26 H 1.09006 * 109.46923 * 71.13364 * 1 2 3 27 27 H 1.08994 * 109.47276 * 239.99506 * 2 1 3 28 28 H 1.09001 * 109.46986 * 119.99745 * 2 1 3 29 29 H 0.96999 * 119.99977 * 180.02562 * 7 6 4 30 30 H 1.07994 * 119.66655 * 359.95198 * 15 14 12 31 31 H 1.08005 * 119.87469 * 179.97438 * 16 15 14 32 32 H 1.08001 * 125.02014 * 179.72948 * 20 18 17 33 33 H 1.08003 * 126.54068 * 180.12891 * 21 20 18 34 34 H 1.08000 * 120.30477 * 359.97438 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0850 2.0836 -1.1733 5 1 2.3075 3.1403 -1.1581 6 6 1.8663 1.4367 -2.3842 7 7 1.0535 0.4060 -2.4410 8 14 2.7281 2.0327 -3.9306 9 1 3.9700 1.2457 -4.1398 10 1 1.8279 1.8564 -5.0983 11 1 3.0718 3.4699 -3.7831 12 6 2.4018 1.9605 1.1549 13 8 2.7221 3.1335 1.1698 14 6 2.4333 1.1712 2.4012 15 6 3.5585 1.2254 3.2369 16 6 3.6021 0.5025 4.3916 17 6 2.5244 -0.3021 4.7574 18 7 2.2849 -1.1228 5.8331 19 1 2.9011 -1.2722 6.5672 20 6 1.0511 -1.7028 5.7132 21 6 0.4552 -1.2833 4.5864 22 6 1.3883 -0.3654 3.9268 23 6 1.3460 0.3735 2.7471 24 1 -0.3633 -1.0083 0.1985 25 1 -0.3634 0.6761 0.7739 26 1 -0.3633 0.3323 -0.9725 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.9013 -0.0456 -3.2858 30 1 4.3987 1.8458 2.9625 31 1 4.4751 0.5534 5.0254 32 1 0.6199 -2.3945 6.4217 33 1 -0.5234 -1.5705 4.2312 34 1 0.4771 0.3292 2.1071 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107568708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:58 Heat of formation + Delta-G solvation = 30.620226 kcal Electronic energy + Delta-G solvation = -18982.311227 eV Core-core repulsion = 16073.899916 eV Total energy + Delta-G solvation = -2908.411311 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.111 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.14327 -40.54999 -37.47968 -37.00662 -33.97117 -32.83976 -31.34975 -30.54987 -29.59940 -27.05529 -24.36387 -23.86178 -23.09704 -21.71390 -20.61233 -19.00678 -18.75074 -18.05201 -17.05315 -16.66837 -15.99557 -15.92515 -15.31525 -15.23550 -14.87558 -14.78015 -14.26358 -13.96046 -13.67843 -13.48423 -13.31886 -13.06001 -12.82467 -12.62857 -12.47795 -12.15454 -12.07815 -11.75062 -11.57729 -10.72875 -10.63170 -10.39145 -9.83046 -9.11889 -8.59737 -8.39778 -5.80582 0.16679 0.42933 1.36624 1.42991 1.54422 1.89723 2.07365 2.26774 2.31530 2.88254 2.98259 3.18892 3.78973 3.97104 4.06739 4.30232 4.42693 4.45566 4.50830 4.78418 4.81004 4.86693 4.91899 5.06047 5.10582 5.20148 5.38313 5.43257 5.52147 5.62902 5.73068 5.82844 5.97574 6.06134 6.21231 6.53860 6.81190 7.16633 7.46316 8.06250 8.56143 Molecular weight = 258.11amu Principal moments of inertia in cm(-1) A = 0.034311 B = 0.005924 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.865752 B = 4725.585143 C = 5274.416688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.116 3.884 3 N -0.437 5.437 4 C -0.360 4.360 5 H 0.072 0.928 6 C 0.015 3.985 7 N -0.851 5.851 8 Si 0.978 3.022 9 H -0.270 1.270 10 H -0.268 1.268 11 H -0.280 1.280 12 C 0.460 3.540 13 O -0.647 6.647 14 C -0.147 4.147 15 C -0.082 4.082 16 C -0.122 4.122 17 C 0.091 3.909 18 N -0.580 5.580 19 H 0.433 0.567 20 C 0.074 3.926 21 C -0.230 4.230 22 C -0.135 4.135 23 C -0.066 4.066 24 H 0.068 0.932 25 H 0.026 0.974 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.278 0.722 30 H 0.119 0.881 31 H 0.156 0.844 32 H 0.220 0.780 33 H 0.158 0.842 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.050 -10.979 14.426 18.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.006 4.006 3 N -0.153 5.153 4 C -0.487 4.487 5 H 0.090 0.910 6 C -0.190 4.190 7 N -0.487 5.487 8 Si 0.801 3.199 9 H -0.195 1.195 10 H -0.192 1.192 11 H -0.205 1.205 12 C 0.251 3.749 13 O -0.538 6.538 14 C -0.151 4.151 15 C -0.102 4.102 16 C -0.142 4.142 17 C -0.018 4.018 18 N -0.185 5.185 19 H 0.273 0.727 20 C -0.052 4.052 21 C -0.254 4.254 22 C -0.140 4.140 23 C -0.086 4.086 24 H 0.086 0.914 25 H 0.045 0.955 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.137 0.863 31 H 0.174 0.826 32 H 0.237 0.763 33 H 0.176 0.824 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.043 -10.649 14.354 17.873 hybrid contribution 0.520 0.717 -0.887 1.254 sum 0.563 -9.932 13.467 16.742 Atomic orbital electron populations 1.22158 0.95303 1.00174 1.02258 1.21800 0.95687 0.82084 1.01078 1.43981 1.52736 1.12763 1.05813 1.19537 1.50222 0.95057 0.83876 0.90967 1.25892 0.95210 0.96674 1.01191 1.70191 1.27892 1.22517 1.28147 0.85187 0.78901 0.78499 0.77293 1.19520 1.19242 1.20477 1.18525 0.84805 0.87166 0.84383 1.90517 1.57971 1.18547 1.86795 1.19695 0.97683 1.01367 0.96374 1.20542 0.96836 0.98802 0.94006 1.19801 0.98267 0.98540 0.97587 1.18424 0.96235 0.96747 0.90409 1.41751 1.17470 1.38805 1.20429 0.72695 1.22490 0.84638 0.98994 0.99115 1.22011 1.01416 1.03923 0.98039 1.19489 0.96767 1.02077 0.95688 1.21221 0.97749 0.93840 0.95754 0.91353 0.95531 0.90399 0.89973 0.92073 0.91171 0.86270 0.82641 0.76334 0.82398 0.85144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.17 8.73 71.98 0.63 -5.54 16 2 C 0.12 5.55 4.89 86.38 0.42 5.97 16 3 N -0.44 -24.47 2.64 -639.14 -1.69 -26.16 16 4 C -0.36 -21.43 9.34 84.09 0.79 -20.64 16 5 H 0.07 4.69 7.34 -2.91 -0.02 4.67 16 6 C 0.02 0.81 5.06 84.95 0.43 1.24 16 7 N -0.85 -43.24 8.06 21.68 0.17 -43.06 16 8 Si 0.98 42.67 29.65 68.60 2.03 44.71 16 9 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 10 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 12 C 0.46 25.87 7.18 86.70 0.62 26.49 16 13 O -0.65 -41.42 16.61 -4.05 -0.07 -41.49 16 14 C -0.15 -6.69 5.00 -20.09 -0.10 -6.79 16 15 C -0.08 -3.16 9.62 22.31 0.21 -2.95 16 16 C -0.12 -3.56 10.00 22.09 0.22 -3.34 16 17 C 0.09 2.52 7.27 39.19 0.28 2.81 16 18 N -0.58 -10.16 6.05 -187.46 -1.13 -11.29 16 19 H 0.43 4.14 8.96 -92.71 -0.83 3.31 16 20 C 0.07 1.16 11.81 82.98 0.98 2.14 16 21 C -0.23 -5.43 11.09 23.52 0.26 -5.17 16 22 C -0.14 -4.40 6.36 -20.21 -0.13 -4.53 16 23 C -0.07 -2.65 7.50 22.75 0.17 -2.48 16 24 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.03 1.15 6.30 -2.39 -0.02 1.14 16 26 H 0.08 3.80 5.89 -2.38 -0.01 3.79 16 27 H 0.08 4.15 5.90 -2.39 -0.01 4.14 16 28 H 0.06 2.71 5.19 -2.39 -0.01 2.69 16 29 H 0.28 12.99 8.31 -92.71 -0.77 12.22 16 30 H 0.12 4.66 8.06 -2.91 -0.02 4.63 16 31 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 32 H 0.22 1.14 8.06 -2.91 -0.02 1.12 16 33 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 34 H 0.13 5.32 3.96 -2.91 -0.01 5.31 16 Total: -1.00 -75.51 280.40 4.43 -71.08 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.32 Total: 19.01 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 4.79 Total: -12.80 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -2.65 Total: -80.51 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -0.07 Total: -41.49 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.71 kcal Total: -75.51 4.43 -71.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107568708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.704 kcal (2) G-P(sol) polarization free energy of solvation -75.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds