Wall clock time and date at job start Sun Mar 29 2020 23:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 120.00047 * 2 1 4 4 C 1.47204 * 109.47035 * 270.00365 * 3 2 1 5 5 N 3.39053 * 110.13448 * 309.42711 * 2 1 3 6 6 C 1.34777 * 119.99902 * 180.02562 * 2 1 3 7 7 O 1.21283 * 119.99353 * 179.97438 * 6 2 1 8 8 C 1.50692 * 119.99931 * 359.97438 * 6 2 1 9 9 C 1.50703 * 109.47000 * 180.02562 * 8 6 2 10 10 C 1.37645 * 120.13007 * 265.30719 * 9 8 6 11 11 C 1.38606 * 120.24649 * 180.32491 * 10 9 8 12 12 C 1.38653 * 120.50471 * 359.65965 * 11 10 9 13 13 C 1.37600 * 120.24898 * 0.02562 * 12 11 10 14 14 C 1.40696 * 120.12867 * 84.99790 * 9 8 6 15 15 C 1.41400 * 120.24530 * 359.97438 * 14 9 8 16 16 H 1.08003 * 119.99719 * 25.87056 * 15 14 9 17 17 C 1.39942 * 120.00205 * 205.88123 * 15 14 9 18 18 N 1.30821 * 119.99968 * 16.29869 * 17 15 14 19 19 Si 1.86803 * 120.00009 * 196.30797 * 17 15 14 20 20 H 1.48496 * 109.47194 * 265.18190 * 19 17 15 21 21 H 1.48505 * 109.46937 * 25.18007 * 19 17 15 22 22 H 1.48498 * 109.47234 * 145.18150 * 19 17 15 23 23 H 1.09003 * 109.47406 * 269.99981 * 1 2 3 24 24 H 1.09001 * 109.47207 * 29.99569 * 1 2 3 25 25 H 1.09001 * 109.47275 * 149.99291 * 1 2 3 26 26 H 1.08997 * 109.47045 * 29.99933 * 3 2 1 27 27 H 1.09002 * 109.47263 * 150.00030 * 3 2 1 28 28 H 1.09000 * 109.47297 * 60.00731 * 8 6 2 29 29 H 1.08997 * 109.47185 * 300.00030 * 8 6 2 30 30 H 1.07994 * 119.87429 * 0.02562 * 10 9 8 31 31 H 1.08002 * 119.74758 * 179.69746 * 11 10 9 32 32 H 1.07998 * 119.87893 * 180.02562 * 12 11 10 33 33 H 1.07997 * 120.12664 * 180.02562 * 13 12 11 34 34 H 0.97002 * 120.00001 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4428 1.6937 -1.3879 5 7 2.6321 2.0217 -2.4589 6 6 2.1388 -1.1672 -0.0005 7 8 3.3517 -1.1671 -0.0010 8 6 1.3853 -2.4722 -0.0005 9 6 2.3646 -3.6177 -0.0005 10 6 2.7396 -4.2061 -1.1870 11 6 3.6350 -5.2642 -1.1893 12 6 4.1683 -5.7374 -0.0001 13 6 3.8127 -5.1602 1.1973 14 6 2.9042 -4.0855 1.2117 15 6 2.5319 -3.4842 2.4361 16 1 1.5777 -2.9861 2.5249 17 6 3.3997 -3.5344 3.5328 18 7 4.6592 -3.8414 3.3568 19 14 2.7598 -3.1633 5.2481 20 1 3.0015 -1.7335 5.5680 21 1 1.3025 -3.4435 5.3041 22 1 3.4665 -4.0178 6.2358 23 1 -0.3634 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3634 -0.8899 -0.5139 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 0.7584 -2.5298 -0.8903 29 1 0.7590 -2.5301 0.8897 30 1 2.3309 -3.8452 -2.1192 31 1 3.9199 -5.7231 -2.1245 32 1 4.8654 -6.5622 -0.0137 33 1 4.2296 -5.5302 2.1223 34 1 5.2606 -3.8766 4.1170 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777375607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:47 Heat of formation + Delta-G solvation = 15.544500 kcal Electronic energy + Delta-G solvation = -18707.498641 eV Core-core repulsion = 15798.433597 eV Total energy + Delta-G solvation = -2909.065043 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.111 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.59818 -37.51164 -36.44983 -34.96211 -33.59228 -31.87566 -29.50393 -29.12216 -26.89627 -25.73455 -24.79822 -20.95141 -20.45959 -18.89295 -17.69958 -17.16735 -16.62405 -16.07110 -15.35589 -14.86921 -14.45093 -13.99444 -13.69603 -13.57831 -13.10783 -12.73668 -12.69142 -12.58487 -12.51210 -12.21652 -11.78914 -11.53648 -11.42548 -11.19090 -11.11417 -10.92423 -10.69087 -10.40837 -9.47886 -9.34344 -9.22731 -9.13306 -8.68655 -7.31890 -7.29331 -6.69734 -4.31331 2.43480 2.81380 2.82533 3.00556 3.07196 3.10036 3.21502 3.27087 3.57785 3.94008 4.12393 4.68777 4.95285 5.11276 5.30225 5.47421 5.58944 5.70004 5.76590 5.94694 6.06954 6.29238 6.35447 6.51738 6.56623 6.77104 7.12082 7.29615 7.43004 7.55279 7.57258 7.68117 7.93361 8.04024 8.14173 8.32922 8.65377 8.73735 8.92120 9.02163 10.25184 Molecular weight = 258.11amu Principal moments of inertia in cm(-1) A = 0.016180 B = 0.007901 C = 0.006070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.128181 B = 3542.811280 C = 4611.881189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.631 5.631 3 C 0.209 3.791 4 C 0.196 3.804 5 N -0.434 5.434 6 C 0.518 3.482 7 O -0.500 6.500 8 C -0.064 4.064 9 C -0.187 4.187 10 C -0.080 4.080 11 C -0.241 4.241 12 C -0.104 4.104 13 C -0.162 4.162 14 C 0.131 3.869 15 C -0.460 4.460 16 H 0.075 0.925 17 C 0.078 3.922 18 N -0.789 5.789 19 Si 0.901 3.099 20 H -0.271 1.271 21 H -0.261 1.261 22 H -0.276 1.276 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.119 0.881 27 H 0.127 0.873 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.805 6.317 0.223 10.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.369 5.369 3 C 0.082 3.918 4 C -0.124 4.124 5 N -0.113 5.113 6 C 0.308 3.692 7 O -0.370 6.370 8 C -0.103 4.103 9 C -0.188 4.188 10 C -0.098 4.098 11 C -0.261 4.261 12 C -0.123 4.123 13 C -0.181 4.181 14 C 0.129 3.871 15 C -0.490 4.490 16 H 0.093 0.907 17 C -0.139 4.139 18 N -0.415 5.415 19 Si 0.726 3.274 20 H -0.197 1.197 21 H -0.185 1.185 22 H -0.201 1.201 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.137 0.863 27 H 0.145 0.855 28 H 0.094 0.906 29 H 0.114 0.886 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.134 0.866 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.612 6.743 -1.222 10.242 hybrid contribution -0.197 0.160 1.159 1.186 sum -7.808 6.904 -0.063 10.423 Atomic orbital electron populations 1.21826 0.79103 1.03146 1.02237 1.48054 1.07034 1.04696 1.77093 1.18787 1.01327 0.87189 0.84484 1.30094 0.93010 0.93272 0.95976 1.81138 1.08969 1.08903 1.12244 1.21368 0.88604 0.84765 0.74503 1.90733 1.13995 1.86510 1.45797 1.20273 0.97607 0.89991 1.02445 1.18990 1.06575 0.99786 0.93495 1.20298 0.97766 0.96374 0.95383 1.20298 1.06097 1.03343 0.96320 1.20683 0.99053 0.98994 0.93568 1.21282 1.02689 0.97608 0.96512 1.17326 0.89264 0.89250 0.91303 1.19441 1.02876 1.31921 0.94759 0.90659 1.25846 0.94145 0.93031 1.00927 1.69840 1.03563 1.35251 1.32798 0.86418 0.80273 0.78982 0.81739 1.19682 1.18463 1.20109 0.91957 0.91567 0.90517 0.86295 0.85485 0.90633 0.88642 0.89852 0.89704 0.89603 0.86566 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.24 59.85 0.61 1.34 16 2 N -0.63 -8.56 2.83 -184.93 -0.52 -9.08 16 3 C 0.21 2.38 5.88 -6.83 -0.04 2.34 16 4 C 0.20 2.76 15.77 -20.76 -0.33 2.43 16 5 N -0.43 -7.23 18.54 42.16 0.78 -6.45 16 6 C 0.52 9.81 7.66 -10.99 -0.08 9.72 16 7 O -0.50 -11.96 15.61 5.56 0.09 -11.88 16 8 C -0.06 -1.18 3.90 -29.04 -0.11 -1.29 16 9 C -0.19 -4.38 4.43 -103.91 -0.46 -4.84 16 10 C -0.08 -1.84 9.66 -39.66 -0.38 -2.22 16 11 C -0.24 -5.62 10.05 -39.29 -0.39 -6.02 16 12 C -0.10 -2.53 10.02 -39.66 -0.40 -2.93 16 13 C -0.16 -4.25 8.68 -38.87 -0.34 -4.59 16 14 C 0.13 3.41 5.56 -106.82 -0.59 2.81 16 15 C -0.46 -11.61 8.46 -37.74 -0.32 -11.93 16 16 H 0.08 1.76 6.36 -52.48 -0.33 1.42 16 17 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 18 N -0.79 -20.59 10.98 55.55 0.61 -19.98 16 19 Si 0.90 18.12 29.59 -169.99 -5.03 13.09 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.26 -5.09 7.11 56.52 0.40 -4.68 16 22 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 25 H 0.08 0.68 6.44 -51.93 -0.33 0.35 16 26 H 0.12 0.78 8.07 -51.93 -0.42 0.36 16 27 H 0.13 1.59 7.42 -51.93 -0.39 1.20 16 28 H 0.08 1.17 7.31 -51.93 -0.38 0.79 16 29 H 0.10 1.65 6.45 -51.93 -0.33 1.32 16 30 H 0.08 1.71 8.06 -52.49 -0.42 1.28 16 31 H 0.08 1.77 8.06 -52.49 -0.42 1.34 16 32 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 33 H 0.12 3.14 6.23 -52.49 -0.33 2.81 16 34 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 LS Contribution 301.33 15.07 4.54 4.54 Total: -1.00 -32.91 301.33 -6.22 -39.13 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -3.76 Total: 3.96 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -2.93 Total: -13.33 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.87 Total: -35.51 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.91 -6.22 -39.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777375607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.672 kcal (2) G-P(sol) polarization free energy of solvation -32.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds