Wall clock time and date at job start Sun Mar 29 2020 23:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 120.00047 * 2 1 4 4 C 1.47204 * 109.47035 * 270.00365 * 3 2 1 5 5 N 3.39053 * 110.13448 * 309.42711 * 2 1 3 6 6 C 1.34777 * 119.99902 * 180.02562 * 2 1 3 7 7 O 1.21283 * 119.99353 * 179.97438 * 6 2 1 8 8 C 1.50692 * 119.99931 * 359.97438 * 6 2 1 9 9 C 1.50703 * 109.47000 * 180.02562 * 8 6 2 10 10 C 1.37645 * 120.13007 * 265.30719 * 9 8 6 11 11 C 1.38606 * 120.24649 * 180.32491 * 10 9 8 12 12 C 1.38653 * 120.50471 * 359.65965 * 11 10 9 13 13 C 1.37600 * 120.24898 * 0.02562 * 12 11 10 14 14 C 1.40696 * 120.12867 * 84.99790 * 9 8 6 15 15 C 1.41400 * 120.24530 * 359.97438 * 14 9 8 16 16 H 1.08003 * 119.99719 * 25.87056 * 15 14 9 17 17 C 1.39942 * 120.00205 * 205.88123 * 15 14 9 18 18 N 1.30821 * 119.99968 * 16.29869 * 17 15 14 19 19 Si 1.86803 * 120.00009 * 196.30797 * 17 15 14 20 20 H 1.48496 * 109.47194 * 265.18190 * 19 17 15 21 21 H 1.48505 * 109.46937 * 25.18007 * 19 17 15 22 22 H 1.48498 * 109.47234 * 145.18150 * 19 17 15 23 23 H 1.09003 * 109.47406 * 269.99981 * 1 2 3 24 24 H 1.09001 * 109.47207 * 29.99569 * 1 2 3 25 25 H 1.09001 * 109.47275 * 149.99291 * 1 2 3 26 26 H 1.08997 * 109.47045 * 29.99933 * 3 2 1 27 27 H 1.09002 * 109.47263 * 150.00030 * 3 2 1 28 28 H 1.09000 * 109.47297 * 60.00731 * 8 6 2 29 29 H 1.08997 * 109.47185 * 300.00030 * 8 6 2 30 30 H 1.07994 * 119.87429 * 0.02562 * 10 9 8 31 31 H 1.08002 * 119.74758 * 179.69746 * 11 10 9 32 32 H 1.07998 * 119.87893 * 180.02562 * 12 11 10 33 33 H 1.07997 * 120.12664 * 180.02562 * 13 12 11 34 34 H 0.97002 * 120.00001 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4428 1.6937 -1.3879 5 7 2.6321 2.0217 -2.4589 6 6 2.1388 -1.1672 -0.0005 7 8 3.3517 -1.1671 -0.0010 8 6 1.3853 -2.4722 -0.0005 9 6 2.3646 -3.6177 -0.0005 10 6 2.7396 -4.2061 -1.1870 11 6 3.6350 -5.2642 -1.1893 12 6 4.1683 -5.7374 -0.0001 13 6 3.8127 -5.1602 1.1973 14 6 2.9042 -4.0855 1.2117 15 6 2.5319 -3.4842 2.4361 16 1 1.5777 -2.9861 2.5249 17 6 3.3997 -3.5344 3.5328 18 7 4.6592 -3.8414 3.3568 19 14 2.7598 -3.1633 5.2481 20 1 3.0015 -1.7335 5.5680 21 1 1.3025 -3.4435 5.3041 22 1 3.4665 -4.0178 6.2358 23 1 -0.3634 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3634 -0.8899 -0.5139 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 0.7584 -2.5298 -0.8903 29 1 0.7590 -2.5301 0.8897 30 1 2.3309 -3.8452 -2.1192 31 1 3.9199 -5.7231 -2.1245 32 1 4.8654 -6.5622 -0.0137 33 1 4.2296 -5.5302 2.1223 34 1 5.2606 -3.8766 4.1170 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777375607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:47 Heat of formation + Delta-G solvation = -4.544549 kcal Electronic energy + Delta-G solvation = -18708.369767 eV Core-core repulsion = 15798.433597 eV Total energy + Delta-G solvation = -2909.936170 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.111 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.97318 -39.21689 -37.72390 -36.19698 -35.43159 -33.50474 -31.32977 -30.31868 -28.26470 -27.12569 -26.38172 -22.81213 -22.05948 -20.34812 -18.99714 -18.78881 -17.93048 -17.34022 -16.98451 -16.32876 -16.05423 -15.40361 -15.15642 -15.10343 -14.50752 -14.33365 -14.02635 -13.71037 -13.58643 -13.45524 -13.27492 -13.06442 -12.89758 -12.70397 -12.58280 -12.49329 -12.38151 -12.06188 -11.29012 -11.13222 -10.95442 -10.72843 -9.80795 -9.19538 -9.15295 -8.51867 -6.21417 1.01650 1.14142 1.41530 1.43197 1.55249 1.60482 1.72907 1.82447 2.26410 2.47017 2.86032 3.09841 3.71917 4.04445 4.28795 4.36609 4.43395 4.51375 4.61722 4.61951 4.74039 4.80674 4.91366 5.01859 5.12755 5.29695 5.39481 5.56102 5.58328 5.82069 6.06948 6.17206 6.24534 6.40749 6.46540 6.48331 6.78688 7.03910 7.16281 7.37802 8.45915 Molecular weight = 258.11amu Principal moments of inertia in cm(-1) A = 0.016180 B = 0.007901 C = 0.006070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.128181 B = 3542.811280 C = 4611.881189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.621 5.621 3 C 0.207 3.793 4 C 0.218 3.782 5 N -0.484 5.484 6 C 0.517 3.483 7 O -0.565 6.565 8 C -0.064 4.064 9 C -0.189 4.189 10 C -0.094 4.094 11 C -0.249 4.249 12 C -0.117 4.117 13 C -0.196 4.196 14 C 0.099 3.901 15 C -0.480 4.480 16 H 0.090 0.910 17 C 0.031 3.969 18 N -0.833 5.833 19 Si 0.976 3.024 20 H -0.265 1.265 21 H -0.247 1.247 22 H -0.276 1.276 23 H 0.083 0.917 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.180 0.820 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.413 7.879 0.629 13.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.356 5.356 3 C 0.081 3.919 4 C -0.100 4.100 5 N -0.163 5.163 6 C 0.306 3.694 7 O -0.441 6.441 8 C -0.103 4.103 9 C -0.190 4.190 10 C -0.112 4.112 11 C -0.268 4.268 12 C -0.135 4.135 13 C -0.215 4.215 14 C 0.096 3.904 15 C -0.509 4.509 16 H 0.108 0.892 17 C -0.183 4.183 18 N -0.460 5.460 19 Si 0.797 3.203 20 H -0.189 1.189 21 H -0.170 1.170 22 H -0.201 1.201 23 H 0.101 0.899 24 H 0.114 0.886 25 H 0.099 0.901 26 H 0.197 0.803 27 H 0.133 0.867 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.120 0.880 33 H 0.114 0.886 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.287 8.332 -0.833 13.264 hybrid contribution 0.580 -0.313 0.934 1.143 sum -9.707 8.019 0.100 12.591 Atomic orbital electron populations 1.22208 0.75888 1.04917 1.04195 1.47988 1.08938 1.03854 1.74841 1.19243 1.01918 0.87531 0.83169 1.30541 0.91527 0.91906 0.96074 1.81162 1.10648 1.10700 1.13829 1.21337 0.87784 0.86320 0.73910 1.90717 1.16567 1.87614 1.49221 1.20319 0.96833 0.88411 1.04721 1.19510 1.06299 1.00535 0.92699 1.20716 0.97722 0.96245 0.96533 1.20667 1.05821 1.03465 0.96849 1.20928 0.99494 0.99561 0.93543 1.21309 1.04516 0.99181 0.96517 1.17753 0.89975 0.89643 0.92997 1.19752 1.03577 1.32413 0.95184 0.89242 1.26802 0.93984 0.92436 1.05082 1.69949 1.05065 1.36874 1.34098 0.85283 0.80121 0.78834 0.76049 1.18941 1.16976 1.20140 0.89859 0.88618 0.90109 0.80308 0.86722 0.87199 0.87294 0.87139 0.87249 0.88035 0.88584 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 10.24 127.77 1.31 2.24 16 2 N -0.62 -14.85 2.83 -857.39 -2.43 -17.27 16 3 C 0.21 4.08 5.88 84.57 0.50 4.58 16 4 C 0.22 5.71 15.77 89.44 1.41 7.12 16 5 N -0.48 -15.62 18.54 20.01 0.37 -15.25 16 6 C 0.52 18.73 7.66 87.65 0.67 19.40 16 7 O -0.56 -27.24 15.61 -3.04 -0.05 -27.29 16 8 C -0.06 -2.23 3.90 29.10 0.11 -2.11 16 9 C -0.19 -8.78 4.43 -19.40 -0.09 -8.87 16 10 C -0.09 -4.25 9.66 22.22 0.21 -4.03 16 11 C -0.25 -11.53 10.05 22.46 0.23 -11.30 16 12 C -0.12 -5.81 10.02 22.22 0.22 -5.59 16 13 C -0.20 -10.73 8.68 22.73 0.20 -10.53 16 14 C 0.10 5.24 5.56 -21.29 -0.12 5.12 16 15 C -0.48 -24.40 8.46 23.46 0.20 -24.20 16 16 H 0.09 4.10 6.36 -2.91 -0.02 4.08 16 17 C 0.03 1.53 5.16 85.26 0.44 1.97 16 18 N -0.83 -45.12 10.98 21.83 0.24 -44.88 16 19 Si 0.98 36.97 29.59 68.60 2.03 39.00 16 20 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 21 H -0.25 -8.68 7.11 99.48 0.71 -7.97 16 22 H -0.28 -10.35 7.11 99.48 0.71 -9.64 16 23 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 24 H 0.10 0.80 8.07 -2.39 -0.02 0.78 16 25 H 0.08 1.07 6.44 -2.39 -0.02 1.05 16 26 H 0.18 1.40 8.07 -2.39 -0.02 1.38 16 27 H 0.11 2.70 7.42 -2.39 -0.02 2.68 16 28 H 0.11 3.03 7.31 -2.39 -0.02 3.01 16 29 H 0.11 3.49 6.45 -2.39 -0.02 3.48 16 30 H 0.11 4.29 8.06 -2.91 -0.02 4.26 16 31 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 32 H 0.10 4.53 8.06 -2.91 -0.02 4.50 16 33 H 0.10 5.52 6.23 -2.91 -0.02 5.50 16 34 H 0.28 13.97 8.30 -92.71 -0.77 13.20 16 Total: -1.00 -75.86 301.33 6.58 -69.28 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 1.12 Total: 22.62 kcal Atomic # 6 Polarization: -31.50 SS G_CDS: 5.30 Total: -26.20 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -1.82 Total: -77.41 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.05 Total: -27.29 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 39.00 kcal Total: -75.86 6.58 -69.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777375607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.738 kcal (2) G-P(sol) polarization free energy of solvation -75.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds