Wall clock time and date at job start Sun Mar 29 2020 23:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99912 * 2 1 4 4 H 1.48506 * 109.46909 * 240.00088 * 3 2 1 5 5 H 1.48499 * 109.47146 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47307 * 119.99958 * 3 2 1 7 7 C 1.38813 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99943 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99919 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99718 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47548 * 324.99848 * 10 9 7 12 12 C 1.53002 * 109.47533 * 85.00110 * 10 9 7 13 13 O 1.42899 * 109.47305 * 64.99377 * 12 10 9 14 14 C 1.53003 * 109.46792 * 204.99902 * 10 9 7 15 15 N 1.46492 * 109.47241 * 55.00226 * 14 10 9 16 16 C 1.34779 * 120.00125 * 180.02562 * 15 14 10 17 17 O 1.21277 * 119.99843 * 359.97438 * 16 15 14 18 18 C 1.50705 * 120.00129 * 179.97438 * 16 15 14 19 19 H 1.09008 * 110.54721 * 306.42546 * 18 16 15 20 20 C 1.55227 * 110.64277 * 69.36370 * 18 16 15 21 21 C 1.54813 * 101.98357 * 155.43734 * 20 18 16 22 22 C 1.54098 * 104.30472 * 339.26359 * 21 20 18 23 23 O 1.43744 * 107.29564 * 357.90152 * 22 21 20 24 24 H 0.97000 * 120.00051 * 0.02562 * 1 2 3 25 25 H 0.96999 * 119.99570 * 359.97438 * 9 7 2 26 26 H 1.09000 * 109.47471 * 185.00047 * 12 10 9 27 27 H 1.09001 * 109.46917 * 304.99706 * 12 10 9 28 28 H 0.96696 * 114.00138 * 180.02562 * 13 12 10 29 29 H 1.09003 * 109.47205 * 294.99825 * 14 10 9 30 30 H 1.09001 * 109.46792 * 175.00201 * 14 10 9 31 31 H 0.97006 * 120.00065 * 359.97438 * 15 14 10 32 32 H 1.08999 * 110.89081 * 37.30466 * 20 18 16 33 33 H 1.09003 * 111.02102 * 273.62980 * 20 18 16 34 34 H 1.09002 * 110.48794 * 220.51904 * 21 20 18 35 35 H 1.09002 * 110.48657 * 98.00326 * 21 20 18 36 36 H 1.08999 * 109.88182 * 117.33024 * 22 21 20 37 37 H 1.08997 * 109.87763 * 238.47782 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0017 11 1 2.9693 -3.5508 -0.5871 12 6 2.4209 -4.0350 1.4391 13 8 1.2262 -4.2876 2.1813 14 6 1.1813 -4.7524 -0.6081 15 7 0.7358 -4.3363 -1.9402 16 6 -0.0535 -5.1485 -2.6710 17 8 -0.3945 -6.2239 -2.2259 18 6 -0.5124 -4.7203 -4.0411 19 1 -0.9912 -3.7420 -3.9958 20 6 0.6790 -4.7012 -5.0360 21 6 -0.0357 -4.8861 -6.3968 22 6 -1.3967 -5.5090 -6.0306 23 8 -1.4098 -5.7000 -4.6059 24 1 -0.4850 0.8400 -0.0004 25 1 0.3556 -2.3880 0.0005 26 1 3.0415 -4.9311 1.4335 27 1 2.9702 -3.2156 1.9028 28 1 1.3806 -4.5332 3.1037 29 1 0.3133 -4.9200 0.0295 30 1 1.7564 -5.6748 -0.6890 31 1 1.0082 -3.4760 -2.2961 32 1 1.3623 -5.5275 -4.8401 33 1 1.2042 -3.7467 -4.9989 34 1 0.5325 -5.5604 -7.0377 35 1 -0.1766 -3.9231 -6.8877 36 1 -2.2029 -4.8356 -6.3216 37 1 -1.5127 -6.4686 -6.5343 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278041341.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:22:32 Heat of formation + Delta-G solvation = -148.786293 kcal Electronic energy + Delta-G solvation = -19789.217639 eV Core-core repulsion = 16565.717758 eV Total energy + Delta-G solvation = -3223.499881 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 258.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.26789 -39.58264 -38.48274 -36.39081 -35.22446 -33.41139 -32.88934 -30.98891 -29.76911 -26.73078 -25.63472 -24.33738 -22.41022 -21.64944 -21.26376 -19.44073 -18.55509 -18.16670 -17.71238 -17.14583 -16.62061 -16.19710 -16.06316 -15.85478 -15.37339 -15.06146 -14.77003 -14.58332 -14.27478 -14.21085 -13.67434 -13.07331 -12.85756 -12.73066 -12.69433 -12.60526 -12.34299 -12.26924 -11.90100 -11.72047 -11.68455 -11.04865 -10.91490 -10.71967 -10.60319 -10.05286 -8.99695 -7.88279 -5.17932 1.51588 1.52121 1.53913 1.59875 1.97742 2.59403 3.06848 3.43235 3.49919 3.62234 3.69046 3.90601 3.94127 4.01925 4.12433 4.17780 4.35138 4.44431 4.56826 4.61593 4.71455 4.81534 4.86621 4.90123 5.00320 5.01034 5.17254 5.23203 5.45612 5.56816 5.80134 6.30046 6.55393 7.07040 7.19916 7.38354 8.10250 8.35983 9.34404 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.017797 B = 0.005798 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.931938 B = 4828.440362 C = 5936.013161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.070 4.070 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.304 1.304 6 H -0.283 1.283 7 C -0.237 4.237 8 H 0.083 0.917 9 N -0.722 5.722 10 C 0.162 3.838 11 H 0.084 0.916 12 C 0.063 3.937 13 O -0.585 6.585 14 C 0.129 3.871 15 N -0.702 5.702 16 C 0.512 3.488 17 O -0.580 6.580 18 C 0.056 3.944 19 H 0.105 0.895 20 C -0.137 4.137 21 C -0.145 4.145 22 C 0.033 3.967 23 O -0.388 6.388 24 H 0.248 0.752 25 H 0.372 0.628 26 H 0.066 0.934 27 H 0.038 0.962 28 H 0.385 0.615 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.413 0.587 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.173 -8.412 -10.155 14.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.263 4.263 3 Si 0.799 3.201 4 H -0.199 1.199 5 H -0.230 1.230 6 H -0.210 1.210 7 C -0.369 4.369 8 H 0.101 0.899 9 N -0.362 5.362 10 C 0.053 3.947 11 H 0.102 0.898 12 C -0.017 4.017 13 O -0.392 6.392 14 C 0.005 3.995 15 N -0.355 5.355 16 C 0.298 3.702 17 O -0.460 6.460 18 C -0.004 4.004 19 H 0.123 0.877 20 C -0.175 4.175 21 C -0.182 4.182 22 C -0.043 4.043 23 O -0.307 6.307 24 H 0.057 0.943 25 H 0.203 0.797 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.233 0.767 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.250 0.750 32 H 0.094 0.906 33 H 0.127 0.873 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.091 0.909 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.692 -9.061 -10.314 14.509 hybrid contribution 0.171 1.382 0.783 1.598 sum 4.863 -7.679 -9.531 13.170 Atomic orbital electron populations 1.69840 1.06715 1.25875 1.59383 1.25485 0.96091 1.00843 1.03876 0.85281 0.77081 0.79578 0.78147 1.19914 1.23039 1.20964 1.19591 0.91529 0.84759 1.41002 0.89925 1.42485 1.05347 1.00205 1.88195 1.20854 0.95134 0.85191 0.93509 0.89824 1.22899 0.86503 0.98635 0.93697 1.86528 1.32967 1.92102 1.27593 1.21400 0.98439 0.97333 0.82328 1.45832 1.50439 1.21664 1.17517 1.20723 0.78066 0.84124 0.87251 1.90652 1.57631 1.24511 1.73202 1.23123 0.92741 0.93437 0.91121 0.87712 1.23151 0.96158 1.04724 0.93464 1.22945 0.95036 1.03437 0.96798 1.23512 0.98418 1.02456 0.79920 1.88969 1.64827 1.55707 1.21159 0.94282 0.79651 0.91630 0.94399 0.76687 0.93419 0.90406 0.75008 0.90575 0.87268 0.88435 0.88288 0.90928 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.31 13.06 21.65 0.28 -57.03 16 2 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 3 Si 0.97 43.70 29.55 68.60 2.03 45.73 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.24 -12.01 9.93 84.03 0.83 -11.17 16 8 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 9 N -0.72 -33.62 4.51 -322.94 -1.46 -35.07 16 10 C 0.16 5.85 2.84 44.99 0.13 5.98 16 11 H 0.08 2.74 8.08 -2.39 -0.02 2.72 16 12 C 0.06 2.05 6.86 71.98 0.49 2.55 16 13 O -0.59 -20.42 12.64 -148.98 -1.88 -22.31 16 14 C 0.13 4.59 5.12 86.38 0.44 5.03 16 15 N -0.70 -23.96 5.39 -463.06 -2.49 -26.46 16 16 C 0.51 18.54 7.20 87.66 0.63 19.17 16 17 O -0.58 -25.87 16.57 15.19 0.25 -25.62 16 18 C 0.06 1.63 3.76 30.61 0.12 1.74 16 19 H 0.11 2.83 8.14 -2.38 -0.02 2.81 16 20 C -0.14 -2.79 6.60 31.98 0.21 -2.57 16 21 C -0.14 -2.23 7.00 31.58 0.22 -2.00 16 22 C 0.03 0.66 7.70 72.35 0.56 1.22 16 23 O -0.39 -12.22 10.80 -130.77 -1.41 -13.64 16 24 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 25 H 0.37 19.82 7.80 -92.71 -0.72 19.10 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.39 9.43 9.12 -74.06 -0.68 8.76 16 29 H 0.05 1.99 7.39 -2.39 -0.02 1.97 16 30 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.41 13.55 8.14 -92.70 -0.75 12.79 16 32 H 0.08 1.63 8.05 -2.39 -0.02 1.61 16 33 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -72.58 314.35 -1.64 -74.22 By element: Atomic # 1 Polarization: 44.63 SS G_CDS: -1.06 Total: 43.57 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: 4.10 Total: 16.59 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -3.67 Total: -118.55 kcal Atomic # 8 Polarization: -58.52 SS G_CDS: -3.04 Total: -61.56 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -72.58 -1.64 -74.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278041341.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.565 kcal (2) G-P(sol) polarization free energy of solvation -72.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds