Wall clock time and date at job start Mon Mar 30 2020 00:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31344 * 1 3 3 Si 1.86798 * 119.99708 * 2 1 4 4 H 1.48496 * 109.47009 * 239.99784 * 3 2 1 5 5 H 1.48490 * 109.47339 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46858 * 120.00225 * 3 2 1 7 7 C 1.39090 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99365 * 179.97438 * 7 2 1 9 9 N 1.36783 * 120.00433 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00447 * 179.97438 * 9 7 2 11 11 O 1.21643 * 119.99620 * 0.02562 * 10 9 7 12 12 C 1.47470 * 120.00378 * 180.27691 * 10 9 7 13 13 N 1.31180 * 120.40163 * 359.72426 * 12 10 9 14 14 N 1.27935 * 124.24077 * 179.97438 * 13 12 10 15 15 H 0.97005 * 118.23606 * 179.97438 * 14 13 12 16 16 C 1.34882 * 123.52019 * 0.02562 * 14 13 12 17 17 O 1.21743 * 120.76496 * 180.02562 * 16 14 13 18 18 C 1.46953 * 118.47023 * 359.97438 * 16 14 13 19 19 C 1.39128 * 122.90367 * 180.02562 * 18 16 14 20 20 C 1.37869 * 119.34384 * 179.97438 * 19 18 16 21 21 C 1.38870 * 120.73889 * 0.02562 * 20 19 18 22 22 C 1.37898 * 120.79041 * 359.97438 * 21 20 19 23 23 C 1.39044 * 119.39884 * 359.73408 * 22 21 20 24 24 H 0.96996 * 120.00293 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00182 * 0.02562 * 9 7 2 26 26 H 1.07994 * 120.32603 * 359.92939 * 19 18 16 27 27 H 1.07998 * 119.63417 * 179.97438 * 20 19 18 28 28 H 1.07995 * 119.60913 * 179.97438 * 21 20 19 29 29 H 1.08004 * 120.30559 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 3.1011 1.6964 -1.2124 5 1 1.2824 2.7464 0.0006 6 1 3.1011 1.6964 1.2125 7 6 2.0088 -1.2046 -0.0005 8 1 3.0888 -1.2045 -0.0010 9 7 1.3249 -2.3892 -0.0005 10 6 1.9987 -3.5564 -0.0016 11 8 3.2152 -3.5564 -0.0021 12 6 1.2614 -4.8335 -0.0078 13 7 -0.0504 -4.8427 -0.0068 14 7 -0.7628 -5.9054 -0.0123 15 1 -1.7282 -5.8107 -0.0107 16 6 -0.2435 -7.1502 -0.0194 17 8 -0.9693 -8.1276 -0.0249 18 6 1.2184 -7.2994 -0.0213 19 6 1.8517 -8.5382 -0.0289 20 6 3.2293 -8.5928 -0.0308 21 6 3.9858 -7.4282 -0.0247 22 6 3.3769 -6.1910 -0.0171 23 6 1.9886 -6.1134 -0.0212 24 1 -0.4850 0.8400 0.0004 25 1 0.3549 -2.3892 -0.0005 26 1 1.2699 -9.4480 -0.0325 27 1 3.7257 -9.5519 -0.0363 28 1 5.0638 -7.4922 -0.0259 29 1 3.9729 -5.2903 -0.0128 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040855152.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:20 Heat of formation + Delta-G solvation = -24.909342 kcal Electronic energy + Delta-G solvation = -18314.049370 eV Core-core repulsion = 15201.971111 eV Total energy + Delta-G solvation = -3112.078259 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 259.074 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.79945 -40.25274 -39.39723 -38.82146 -36.14751 -33.87698 -33.30659 -32.32277 -31.36892 -27.65376 -26.05151 -25.64057 -23.53177 -22.06899 -20.42551 -20.03225 -19.69014 -18.74938 -17.62131 -17.30901 -16.95676 -16.58115 -15.75519 -15.64445 -15.54043 -15.51541 -15.09117 -14.34014 -14.08656 -13.80964 -13.54775 -13.12957 -12.91560 -12.79790 -12.51420 -12.28696 -12.09581 -11.57882 -10.98561 -10.87223 -10.38579 -10.18001 -10.13903 -9.35989 -8.56747 -5.99962 -0.57968 -0.42253 0.61819 1.43042 1.43826 1.47062 1.57948 1.58736 2.24345 2.25342 2.61359 2.83441 3.00100 3.25034 3.50725 3.72591 3.85529 4.17169 4.29534 4.31694 4.57864 4.59752 5.01493 5.17345 5.23031 5.33859 5.41725 5.43898 5.81489 5.90739 6.36665 6.46638 6.97140 7.04434 7.40343 7.93332 8.59152 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.030856 B = 0.005626 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.215950 B = 4975.840138 C = 5873.196975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.007 4.007 3 Si 1.003 2.997 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.266 1.266 7 C -0.332 4.332 8 H 0.099 0.901 9 N -0.526 5.526 10 C 0.484 3.516 11 O -0.606 6.606 12 C 0.082 3.918 13 N -0.232 5.232 14 N -0.456 5.456 15 H 0.448 0.552 16 C 0.511 3.489 17 O -0.540 6.540 18 C -0.163 4.163 19 C -0.062 4.062 20 C -0.102 4.102 21 C -0.080 4.080 22 C -0.109 4.109 23 C -0.051 4.051 24 H 0.285 0.715 25 H 0.403 0.597 26 H 0.154 0.846 27 H 0.178 0.822 28 H 0.168 0.832 29 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.432 -12.051 -0.048 12.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.210 4.210 3 Si 0.825 3.175 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.191 1.191 7 C -0.463 4.463 8 H 0.117 0.883 9 N -0.159 5.159 10 C 0.271 3.729 11 O -0.494 6.494 12 C -0.098 4.098 13 N -0.055 5.055 14 N -0.203 5.203 15 H 0.295 0.705 16 C 0.304 3.696 17 O -0.418 6.418 18 C -0.169 4.169 19 C -0.080 4.080 20 C -0.121 4.121 21 C -0.098 4.098 22 C -0.129 4.129 23 C -0.055 4.055 24 H 0.094 0.906 25 H 0.238 0.762 26 H 0.172 0.828 27 H 0.196 0.804 28 H 0.186 0.814 29 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.984 -11.969 -0.048 12.336 hybrid contribution -0.599 0.482 -0.002 0.769 sum 2.385 -11.487 -0.050 11.732 Atomic orbital electron populations 1.69670 1.07397 1.30311 1.46690 1.26328 0.96514 1.03100 0.95086 0.84833 0.77731 0.75438 0.79478 1.19053 1.19626 1.19061 1.19953 0.93657 0.83100 1.49569 0.88292 1.41891 1.10121 1.04552 1.59375 1.16969 0.86686 0.82168 0.87092 1.90446 1.13149 1.85865 1.59926 1.22825 0.87734 0.94942 1.04264 1.70416 1.08743 1.15125 1.11232 1.44097 1.11481 1.01365 1.63387 0.70481 1.19296 0.89876 0.83483 0.76925 1.90846 1.62478 1.37416 1.51013 1.20065 0.91358 0.95553 1.09899 1.21239 0.95842 0.95380 0.95580 1.21785 0.92381 1.00472 0.97455 1.21935 1.02483 0.90829 0.94559 1.22148 0.92889 1.01271 0.96552 1.19448 0.95741 0.89986 1.00311 0.90574 0.76237 0.82842 0.80443 0.81436 0.82753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.87 13.05 21.69 0.28 -46.59 15 2 C -0.01 -0.37 5.50 84.97 0.47 0.10 15 3 Si 1.00 39.94 29.55 68.60 2.03 41.96 15 4 H -0.27 -10.35 7.11 99.48 0.71 -9.65 15 5 H -0.27 -10.28 7.11 99.48 0.71 -9.57 15 6 H -0.27 -10.36 7.11 99.48 0.71 -9.65 15 7 C -0.33 -17.89 9.68 84.13 0.81 -17.08 15 8 H 0.10 5.46 7.15 -2.91 -0.02 5.43 15 9 N -0.53 -27.02 5.27 -309.96 -1.63 -28.65 15 10 C 0.48 23.50 7.74 86.68 0.67 24.17 15 11 O -0.61 -31.13 13.26 -4.17 -0.06 -31.19 15 12 C 0.08 3.39 7.03 44.04 0.31 3.70 15 13 N -0.23 -8.78 10.53 -44.77 -0.47 -9.25 15 14 N -0.46 -14.74 6.09 -176.01 -1.07 -15.81 15 15 H 0.45 11.72 8.89 -220.26 -1.96 9.76 15 16 C 0.51 17.14 8.00 86.51 0.69 17.84 15 17 O -0.54 -19.13 17.50 -4.49 -0.08 -19.20 15 18 C -0.16 -5.24 5.90 -20.00 -0.12 -5.36 15 19 C -0.06 -1.50 9.70 22.40 0.22 -1.29 15 20 C -0.10 -1.91 10.01 22.33 0.22 -1.69 15 21 C -0.08 -1.76 10.01 22.34 0.22 -1.54 15 22 C -0.11 -3.52 9.36 22.38 0.21 -3.31 15 23 C -0.05 -1.84 5.91 -19.94 -0.12 -1.96 15 24 H 0.28 13.72 8.31 -92.71 -0.77 12.95 15 25 H 0.40 20.40 7.25 -92.71 -0.67 19.73 15 26 H 0.15 3.22 7.87 -2.91 -0.02 3.20 15 27 H 0.18 1.71 8.06 -2.91 -0.02 1.69 15 28 H 0.17 2.46 8.06 -2.91 -0.02 2.43 15 29 H 0.16 5.77 5.22 -2.91 -0.02 5.76 15 Total: -1.00 -64.25 266.22 1.21 -63.04 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: -1.39 Total: 32.08 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: 3.59 Total: 13.60 kcal Atomic # 7 Polarization: -97.40 SS G_CDS: -2.89 Total: -100.29 kcal Atomic # 8 Polarization: -50.26 SS G_CDS: -0.13 Total: -50.39 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.96 kcal Total: -64.25 1.21 -63.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040855152.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.135 kcal (2) G-P(sol) polarization free energy of solvation -64.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds