Wall clock time and date at job start Mon Mar 30 2020 00:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36931 * 120.00033 * 2 1 4 4 H 1.07999 * 119.99930 * 201.03551 * 3 2 1 5 5 C 1.38809 * 120.00075 * 21.03522 * 3 2 1 6 6 N 1.31617 * 120.00073 * 14.50753 * 5 3 2 7 7 Si 1.86801 * 120.00054 * 194.50597 * 5 3 2 8 8 H 1.48507 * 109.47021 * 85.00356 * 7 5 3 9 9 H 1.48501 * 109.47195 * 205.00146 * 7 5 3 10 10 H 1.48504 * 109.47316 * 325.00350 * 7 5 3 11 11 C 1.46507 * 119.99776 * 179.97438 * 2 1 3 12 12 C 1.50695 * 109.46966 * 270.00098 * 11 2 1 13 13 C 1.38721 * 120.02337 * 90.00346 * 12 11 2 14 14 O 1.35945 * 120.01974 * 359.97438 * 13 12 11 15 15 C 1.38678 * 119.95483 * 180.02562 * 13 12 11 16 16 C 1.38194 * 119.98958 * 0.02562 * 15 13 12 17 17 C 1.38398 * 120.04591 * 0.25306 * 16 15 13 18 18 F 1.35102 * 119.97649 * 179.74947 * 17 16 15 19 19 C 1.38234 * 120.02365 * 270.02186 * 12 11 2 20 20 Cl 1.73596 * 119.99294 * 359.95801 * 19 12 11 21 21 H 1.08998 * 109.47518 * 275.09966 * 1 2 3 22 22 H 1.08998 * 109.46808 * 35.10112 * 1 2 3 23 23 H 1.09007 * 109.47174 * 155.09835 * 1 2 3 24 24 H 0.97001 * 120.00047 * 180.02562 * 6 5 3 25 25 H 1.09000 * 109.46814 * 150.00042 * 11 2 1 26 26 H 1.08995 * 109.46870 * 30.00294 * 11 2 1 27 27 H 0.96700 * 114.00030 * 270.01924 * 14 13 12 28 28 H 1.07996 * 120.00667 * 179.97438 * 15 13 12 29 29 H 1.08006 * 119.97763 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1757 1.2170 -0.3357 5 6 1.5250 2.3479 0.4315 6 7 0.3938 2.2775 1.1006 7 14 2.2899 4.0118 0.0625 8 1 1.8725 4.4593 -1.2906 9 1 1.8354 5.0005 1.0730 10 1 3.7698 3.8982 0.1118 11 6 2.1975 -1.2688 0.0006 12 6 2.4486 -1.7032 1.4215 13 6 1.5241 -2.5038 2.0763 14 8 0.3907 -2.8966 1.4365 15 6 1.7563 -2.9023 3.3841 16 6 2.9080 -2.5012 4.0342 17 6 3.8274 -1.6977 3.3828 18 9 4.9504 -1.3023 4.0214 19 6 3.6001 -1.3038 2.0737 20 17 4.7580 -0.3024 1.2551 21 1 -0.3634 0.0913 1.0235 22 1 -0.3633 0.8408 -0.5909 23 1 -0.3634 -0.9322 -0.4327 24 1 -0.0429 3.0896 1.4018 25 1 3.1499 -1.1387 -0.5133 26 1 1.6084 -2.0286 -0.5130 27 1 -0.3534 -2.2887 1.5457 28 1 1.0370 -3.5252 3.8947 29 1 3.0885 -2.8113 5.0529 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237127314.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:07:21 Heat of formation + Delta-G solvation = -43.174284 kcal Electronic energy + Delta-G solvation = -17636.111611 eV Core-core repulsion = 14500.888513 eV Total energy + Delta-G solvation = -3135.223098 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.58101 -39.48443 -36.50097 -35.63473 -35.44568 -32.03430 -30.24442 -28.95522 -26.21496 -25.69781 -22.53932 -22.16118 -20.51077 -18.10356 -17.14467 -16.78180 -16.38720 -15.56234 -15.16198 -14.78909 -14.24638 -13.73439 -13.60543 -13.49531 -13.08624 -12.74508 -12.13088 -11.93828 -11.62124 -11.23757 -10.96685 -10.81719 -10.70749 -10.48961 -10.37137 -10.21465 -9.96598 -9.80313 -8.61223 -8.35970 -8.08938 -6.89906 -5.81780 -3.21335 1.30517 1.42772 2.61270 3.36103 3.42662 3.43672 3.65619 4.46183 4.47039 4.59592 4.97125 5.21700 5.38219 5.50194 5.62418 5.89222 5.97914 6.14979 6.23193 6.47885 6.57858 6.62711 6.80226 6.90930 7.24818 7.55559 7.79244 7.94129 8.29114 9.14460 9.75317 10.22813 11.23229 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.019871 B = 0.009735 C = 0.007677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.737568 B = 2875.455180 C = 3646.162145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.582 5.582 3 C -0.244 4.244 4 H 0.077 0.923 5 C 0.003 3.997 6 N -0.905 5.905 7 Si 0.902 3.098 8 H -0.286 1.286 9 H -0.291 1.291 10 H -0.278 1.278 11 C 0.176 3.824 12 C -0.073 4.073 13 C 0.109 3.891 14 O -0.493 6.493 15 C -0.119 4.119 16 C -0.150 4.150 17 C 0.092 3.908 18 F -0.136 7.136 19 C -0.044 4.044 20 Cl -0.042 7.042 21 H 0.027 0.973 22 H 0.048 0.952 23 H 0.005 0.995 24 H 0.253 0.747 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.392 0.608 28 H 0.134 0.866 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.302 -9.277 3.093 10.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.301 5.301 3 C -0.373 4.373 4 H 0.095 0.905 5 C -0.196 4.196 6 N -0.549 5.549 7 Si 0.732 3.268 8 H -0.213 1.213 9 H -0.217 1.217 10 H -0.203 1.203 11 C 0.049 3.951 12 C -0.079 4.079 13 C 0.063 3.937 14 O -0.304 6.304 15 C -0.138 4.138 16 C -0.170 4.170 17 C 0.072 3.928 18 F -0.114 7.114 19 C -0.073 4.073 20 Cl -0.012 7.012 21 H 0.046 0.954 22 H 0.067 0.933 23 H 0.024 0.976 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.248 0.752 28 H 0.152 0.848 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.639 -9.446 2.867 10.219 hybrid contribution 0.268 1.662 0.432 1.738 sum 2.907 -7.784 3.299 8.940 Atomic orbital electron populations 1.20912 0.82175 0.96190 0.99381 1.44261 1.01990 1.00225 1.83669 1.19370 0.97804 0.84281 1.35856 0.90518 1.25006 0.97835 0.98543 0.98191 1.70054 1.18825 1.27117 1.38885 0.86297 0.78976 0.83932 0.77625 1.21311 1.21695 1.20345 1.20083 0.97785 0.89020 0.88231 1.21337 0.91050 0.92544 1.02964 1.18039 0.88869 0.96545 0.90209 1.84718 1.20683 1.50791 1.74165 1.21193 0.97748 1.01214 0.93662 1.20690 0.94591 1.00919 1.00824 1.17421 0.85305 1.00024 0.90020 1.91482 1.49121 1.89390 1.81425 1.20574 0.94566 1.00086 0.92072 1.98362 1.57213 1.67278 1.78397 0.95436 0.93339 0.97648 0.93660 0.91768 0.91922 0.75151 0.84766 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.57 8.51 59.85 0.51 4.08 15 2 N -0.58 -13.83 2.91 -182.50 -0.53 -14.36 15 3 C -0.24 -6.39 8.91 -15.06 -0.13 -6.53 15 4 H 0.08 2.00 6.98 -52.49 -0.37 1.64 15 5 C 0.00 0.08 5.07 -17.43 -0.09 -0.01 15 6 N -0.90 -25.40 10.68 55.49 0.59 -24.80 15 7 Si 0.90 21.77 29.58 -169.99 -5.03 16.74 15 8 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 11 C 0.18 3.59 5.22 -5.19 -0.03 3.56 15 12 C -0.07 -1.42 5.48 -104.45 -0.57 -1.99 15 13 C 0.11 1.89 6.67 -39.24 -0.26 1.63 15 14 O -0.49 -7.77 12.55 -19.57 -0.25 -8.01 15 15 C -0.12 -1.78 9.98 -39.44 -0.39 -2.17 15 16 C -0.15 -2.27 10.02 -39.54 -0.40 -2.67 15 17 C 0.09 1.65 7.27 -39.39 -0.29 1.37 15 18 F -0.14 -2.41 16.83 2.25 0.04 -2.37 15 19 C -0.04 -0.86 6.32 -39.45 -0.25 -1.11 15 20 Cl -0.04 -0.83 25.30 -51.86 -1.31 -2.14 15 21 H 0.03 0.66 7.38 -51.93 -0.38 0.28 15 22 H 0.05 1.20 7.25 -51.93 -0.38 0.83 15 23 H 0.01 0.10 7.83 -51.93 -0.41 -0.31 15 24 H 0.25 6.98 8.31 -40.82 -0.34 6.64 15 25 H 0.06 1.30 6.79 -51.93 -0.35 0.95 15 26 H 0.06 1.18 7.25 -51.93 -0.38 0.81 15 27 H 0.39 5.35 8.55 45.56 0.39 5.74 15 28 H 0.13 1.60 8.06 -52.49 -0.42 1.18 15 29 H 0.14 1.65 8.06 -52.48 -0.42 1.23 15 LS Contribution 269.09 15.07 4.06 4.06 Total: -1.00 -28.98 269.09 -6.18 -35.16 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -1.85 Total: -0.42 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -1.90 Total: -3.85 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.06 Total: -39.16 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -0.25 Total: -8.01 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.31 Total: -2.14 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.98 -6.18 -35.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237127314.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.012 kcal (2) G-P(sol) polarization free energy of solvation -28.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds