Wall clock time and date at job start Mon Mar 30 2020 00:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36942 * 119.99881 * 2 1 4 4 H 1.08003 * 120.00043 * 203.04336 * 3 2 1 5 5 C 1.38809 * 120.00025 * 23.03534 * 3 2 1 6 6 N 1.31617 * 120.00279 * 13.06001 * 5 3 2 7 7 Si 1.86805 * 119.99872 * 193.06482 * 5 3 2 8 8 H 1.48494 * 109.47236 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47131 * 119.99980 * 7 5 3 10 10 H 1.48505 * 109.46784 * 239.99744 * 7 5 3 11 11 C 1.46504 * 120.00457 * 179.97438 * 2 1 3 12 12 C 1.50697 * 109.46786 * 90.00045 * 11 2 1 13 13 C 1.38289 * 119.93562 * 269.73056 * 12 11 2 14 14 C 1.38324 * 120.04747 * 179.72976 * 13 12 11 15 15 F 1.35107 * 120.03784 * 180.27299 * 14 13 12 16 16 C 1.38901 * 119.91952 * 0.52326 * 14 13 12 17 17 O 1.35979 * 120.06454 * 179.77282 * 16 14 13 18 18 C 1.38720 * 119.86731 * 359.74952 * 16 14 13 19 19 Cl 1.73600 * 120.02729 * 180.02562 * 18 16 14 20 20 C 1.38229 * 119.93157 * 90.00418 * 12 11 2 21 21 H 1.08999 * 109.47589 * 275.12785 * 1 2 3 22 22 H 1.09003 * 109.47067 * 35.13539 * 1 2 3 23 23 H 1.09008 * 109.46828 * 155.13219 * 1 2 3 24 24 H 0.97000 * 120.00208 * 179.97438 * 6 5 3 25 25 H 1.09004 * 109.46855 * 330.00642 * 11 2 1 26 26 H 1.08999 * 109.47369 * 210.00385 * 11 2 1 27 27 H 1.07998 * 119.97481 * 0.02562 * 13 12 11 28 28 H 0.96701 * 114.00226 * 269.97344 * 17 16 14 29 29 H 1.08002 * 119.95570 * 359.97438 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1650 1.2233 -0.3661 5 6 1.5385 2.3402 0.4704 6 7 0.4129 2.2597 1.1477 7 14 2.3138 4.0077 0.1420 8 1 3.5667 3.8269 -0.6344 9 1 1.3676 4.8495 -0.6333 10 1 2.6238 4.6723 1.4334 11 6 2.1975 -1.2687 0.0006 12 6 2.4487 -1.7043 -1.4201 13 6 1.5286 -2.5076 -2.0685 14 6 1.7541 -2.9042 -3.3743 15 9 0.8524 -3.6845 -4.0095 16 6 2.9112 -2.5035 -4.0301 17 8 3.1381 -2.8954 -5.3122 18 6 3.8346 -1.7023 -3.3745 19 17 5.2818 -1.1986 -4.1903 20 6 3.6011 -1.3046 -2.0705 21 1 -0.3634 0.0918 1.0235 22 1 -0.3633 0.8404 -0.5914 23 1 -0.3633 -0.9325 -0.4322 24 1 -0.0139 3.0662 1.4767 25 1 1.6084 -2.0282 0.5147 26 1 3.1499 -1.1381 0.5144 27 1 0.6310 -2.8216 -1.5565 28 1 3.6206 -3.7299 -5.3889 29 1 4.3197 -0.6805 -1.5600 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237998218.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:07:24 Heat of formation + Delta-G solvation = -46.807368 kcal Electronic energy + Delta-G solvation = -17007.089195 eV Core-core repulsion = 13871.708555 eV Total energy + Delta-G solvation = -3135.380640 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.79511 -39.54535 -37.20726 -36.42530 -35.17729 -31.73692 -30.33884 -29.64142 -26.15229 -25.60596 -22.82881 -22.28227 -20.64159 -18.62232 -17.07609 -16.84524 -16.51506 -15.94905 -15.09887 -14.94165 -14.67668 -14.02326 -13.66694 -13.60649 -13.25614 -12.68664 -12.37251 -12.25477 -11.51835 -11.34280 -11.11412 -10.91939 -10.86093 -10.69750 -10.59354 -10.41473 -10.01113 -9.97327 -8.66457 -8.58372 -8.37548 -6.87901 -5.80456 -3.28903 1.10457 1.18458 2.12321 3.34577 3.42456 3.44017 3.53236 3.94351 4.41723 4.46216 4.98398 5.06990 5.37857 5.41397 5.51564 5.60655 5.88253 5.97958 6.17601 6.19489 6.46837 6.66089 6.75625 6.83256 7.29387 7.50013 7.64540 7.74278 8.29506 9.13487 9.75398 10.22743 11.24064 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.021717 B = 0.006730 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.978176 B = 4159.278348 C = 5037.282563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.590 5.590 3 C -0.261 4.261 4 H 0.070 0.930 5 C 0.007 3.993 6 N -0.904 5.904 7 Si 0.904 3.096 8 H -0.276 1.276 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.181 3.819 12 C -0.045 4.045 13 C -0.130 4.130 14 C 0.083 3.917 15 F -0.134 7.134 16 C 0.059 3.941 17 O -0.478 6.478 18 C -0.035 4.035 19 Cl -0.058 7.058 20 C -0.091 4.091 21 H 0.036 0.964 22 H 0.042 0.958 23 H -0.001 1.001 24 H 0.253 0.747 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.140 0.860 28 H 0.385 0.615 29 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.747 -11.224 -7.127 14.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.311 5.311 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.192 4.192 6 N -0.548 5.548 7 Si 0.733 3.267 8 H -0.201 1.201 9 H -0.215 1.215 10 H -0.216 1.216 11 C 0.053 3.947 12 C -0.049 4.049 13 C -0.150 4.150 14 C 0.063 3.937 15 F -0.112 7.112 16 C 0.012 3.988 17 O -0.287 6.287 18 C -0.062 4.062 19 Cl -0.029 7.029 20 C -0.110 4.110 21 H 0.054 0.946 22 H 0.060 0.940 23 H 0.017 0.983 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.158 0.842 28 H 0.241 0.759 29 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.403 -10.513 -7.259 13.872 hybrid contribution 0.464 0.530 -0.457 0.840 sum 5.867 -9.983 -7.716 13.915 Atomic orbital electron populations 1.20869 0.82255 0.95636 0.99733 1.43911 1.01925 1.00096 1.85181 1.19203 0.98357 0.85420 1.36069 0.91222 1.25005 0.97731 0.98565 0.97876 1.70072 1.19411 1.27305 1.38037 0.86204 0.78719 0.84181 0.77577 1.20139 1.21519 1.21611 1.19833 0.97742 0.89343 0.87821 1.21263 0.91015 0.91531 1.01140 1.21131 1.01322 1.00094 0.92461 1.17856 0.88726 0.95708 0.91415 1.91483 1.65618 1.72153 1.81967 1.17908 0.93703 1.01594 0.85576 1.84926 1.78739 1.44218 1.20856 1.21133 0.89727 1.01670 0.93701 1.98356 1.35502 1.89811 1.79274 1.21033 0.98695 0.99484 0.91812 0.94590 0.93971 0.98258 0.93652 0.92704 0.91554 0.84184 0.75926 0.83994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.77 8.98 59.84 0.54 4.31 15 2 N -0.59 -14.01 2.90 -182.50 -0.53 -14.54 15 3 C -0.26 -6.85 9.65 -15.06 -0.15 -7.00 15 4 H 0.07 1.78 7.86 -52.48 -0.41 1.36 15 5 C 0.01 0.19 5.10 -17.43 -0.09 0.10 15 6 N -0.90 -25.68 10.72 55.49 0.59 -25.09 15 7 Si 0.90 21.48 29.57 -169.99 -5.03 16.46 15 8 H -0.28 -6.42 7.11 56.52 0.40 -6.01 15 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 11 C 0.18 3.37 5.77 -5.19 -0.03 3.34 15 12 C -0.05 -0.76 5.46 -104.61 -0.57 -1.33 15 13 C -0.13 -2.05 9.67 -39.53 -0.38 -2.43 15 14 C 0.08 1.29 7.31 -39.30 -0.29 1.01 15 15 F -0.13 -2.07 17.11 2.25 0.04 -2.03 15 16 C 0.06 0.90 6.70 -39.16 -0.26 0.63 15 17 O -0.48 -6.42 12.83 -19.67 -0.25 -6.67 15 18 C -0.03 -0.54 6.33 -39.38 -0.25 -0.79 15 19 Cl -0.06 -0.81 28.50 -51.86 -1.48 -2.29 15 20 C -0.09 -1.47 9.48 -39.56 -0.37 -1.85 15 21 H 0.04 0.91 7.34 -51.93 -0.38 0.53 15 22 H 0.04 1.09 7.35 -51.93 -0.38 0.71 15 23 H 0.00 -0.02 8.03 -51.92 -0.42 -0.44 15 24 H 0.25 6.99 8.31 -40.82 -0.34 6.65 15 25 H 0.05 0.92 8.01 -51.93 -0.42 0.51 15 26 H 0.07 1.19 7.98 -51.93 -0.41 0.78 15 27 H 0.14 2.02 8.06 -52.49 -0.42 1.60 15 28 H 0.39 3.25 9.06 45.56 0.41 3.66 15 29 H 0.14 2.26 8.06 -52.49 -0.42 1.83 15 LS Contribution 277.48 15.07 4.18 4.18 Total: -1.00 -29.56 277.48 -6.32 -35.88 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: -1.99 Total: -1.88 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -1.85 Total: -4.01 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.06 Total: -39.62 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: -0.25 Total: -6.67 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.46 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.48 Total: -2.29 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.56 -6.32 -35.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237998218.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.931 kcal (2) G-P(sol) polarization free energy of solvation -29.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds