Wall clock time and date at job start Sun Mar 29 2020 23:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86795 * 120.00330 * 2 1 4 4 H 1.48499 * 109.47409 * 270.00315 * 3 2 1 5 5 H 1.48504 * 109.46732 * 30.00038 * 3 2 1 6 6 H 1.48503 * 109.47095 * 149.99764 * 3 2 1 7 7 C 1.38801 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99873 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99878 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47200 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 179.97438 * 11 10 9 14 14 C 1.46495 * 119.99828 * 0.02562 * 13 11 10 15 15 C 1.53004 * 109.46986 * 90.00387 * 14 13 11 16 16 O 1.42903 * 109.47454 * 64.99600 * 15 14 13 17 17 C 1.46496 * 119.99544 * 180.02562 * 13 11 10 18 18 C 1.52999 * 109.47346 * 90.00236 * 17 13 11 19 19 C 1.53002 * 117.49899 * 243.61672 * 18 17 13 20 20 C 1.52996 * 60.00114 * 252.51022 * 19 18 17 21 21 H 0.97001 * 119.99701 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46925 * 60.00038 * 10 9 7 23 23 H 1.09000 * 109.47556 * 300.00312 * 10 9 7 24 24 H 1.09004 * 109.46971 * 209.99938 * 14 13 11 25 25 H 1.08993 * 109.47768 * 330.00002 * 14 13 11 26 26 H 1.09003 * 109.46797 * 185.00015 * 15 14 13 27 27 H 1.09002 * 109.47041 * 304.99175 * 15 14 13 28 28 H 0.96700 * 113.99874 * 179.97438 * 16 15 14 29 29 H 1.09008 * 109.47096 * 209.99661 * 17 13 11 30 30 H 1.09003 * 109.47776 * 329.99537 * 17 13 11 31 31 H 1.09001 * 115.54979 * 29.32886 * 18 17 13 32 32 H 1.09003 * 117.49376 * 0.02562 * 19 18 17 33 33 H 1.09003 * 117.49783 * 145.02044 * 19 18 17 34 34 H 1.09002 * 117.49978 * 252.50955 * 20 19 18 35 35 H 1.09001 * 117.50308 * 107.49262 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3028 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3432 -0.0003 14 6 4.2890 -6.1021 -0.0008 15 6 4.7926 -6.0184 1.4416 16 8 4.6208 -7.2851 2.0804 17 6 2.3302 -7.7151 -0.0003 18 6 2.1508 -8.1926 -1.4427 19 6 0.7301 -8.5191 -1.9073 20 6 1.7319 -9.6483 -1.6581 21 1 -0.4850 0.8401 -0.0004 22 1 3.1244 -3.7314 0.8895 23 1 3.1245 -3.7314 -0.8905 24 1 4.7937 -6.9201 -0.5149 25 1 4.5008 -5.1645 -0.5146 26 1 5.8493 -5.7512 1.4425 27 1 4.2256 -5.2596 1.9809 28 1 4.9198 -7.3056 2.9998 29 1 3.0365 -8.3676 0.5132 30 1 1.3695 -7.7434 0.5140 31 1 2.8302 -7.7513 -2.1719 32 1 -0.0768 -8.3933 -1.1853 33 1 0.4745 -8.2925 -2.9424 34 1 2.1354 -10.1646 -2.5292 35 1 1.5841 -10.2659 -0.7721 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339770311.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:06 Heat of formation + Delta-G solvation = -62.363509 kcal Electronic energy + Delta-G solvation = -17333.138207 eV Core-core repulsion = 14458.420108 eV Total energy + Delta-G solvation = -2874.718099 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 259.103 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.66044 -37.15632 -37.02844 -34.65612 -32.43070 -30.17008 -29.08133 -26.15773 -25.38685 -23.03316 -22.27290 -20.82147 -19.01894 -17.85016 -17.49698 -16.62022 -16.15051 -15.54179 -14.86896 -14.80059 -14.39303 -14.01267 -13.79625 -13.72345 -13.00291 -12.59125 -12.48677 -12.35453 -12.05563 -11.48101 -11.42392 -11.35064 -11.06922 -11.02242 -10.77463 -10.42116 -10.15582 -9.90529 -9.76656 -9.26238 -9.06798 -8.45339 -8.21371 -6.49561 -6.21701 -3.92127 2.97352 3.11947 3.21630 3.25693 3.29633 3.59643 3.91342 4.11855 4.20326 4.78874 4.82599 4.98645 5.03168 5.04851 5.11429 5.13777 5.26902 5.44042 5.46977 5.58957 5.64428 5.72435 5.83101 5.85097 5.94481 6.00270 6.12377 6.17968 6.30095 6.78502 7.44858 7.58757 7.66677 8.34666 8.64903 9.23437 10.85725 Molecular weight = 259.10amu Principal moments of inertia in cm(-1) A = 0.025668 B = 0.005084 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.597836 B = 5505.640284 C = 6276.083815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.151 4.151 11 C 0.531 3.469 12 O -0.512 6.512 13 N -0.610 5.610 14 C 0.112 3.888 15 C 0.055 3.945 16 O -0.570 6.570 17 C 0.153 3.847 18 C -0.168 4.168 19 C -0.170 4.170 20 C -0.180 4.180 21 H 0.268 0.732 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.377 0.623 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.655 -15.271 0.549 18.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.319 3.681 12 O -0.385 6.385 13 N -0.345 5.345 14 C -0.012 4.012 15 C -0.024 4.024 16 O -0.375 6.375 17 C 0.030 3.970 18 C -0.187 4.187 19 C -0.207 4.207 20 C -0.218 4.218 21 H 0.078 0.922 22 H 0.104 0.896 23 H 0.106 0.894 24 H 0.102 0.898 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.224 0.776 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.457 -15.604 -0.033 17.749 hybrid contribution 2.357 1.540 0.474 2.855 sum 10.814 -14.064 0.441 17.747 Atomic orbital electron populations 1.70023 1.05957 1.27431 1.46842 1.24985 0.95010 0.98993 0.94550 0.86180 0.79395 0.81628 0.78352 1.20266 1.20754 1.19720 1.22862 0.94856 0.91711 1.58957 0.91010 1.85425 1.05029 0.96249 1.96663 1.23595 1.06426 0.95742 1.04426 1.20319 0.86380 0.86176 0.75249 1.90685 1.15140 1.85258 1.47440 1.47817 1.05685 1.05897 1.75128 1.21623 0.81237 1.03297 0.95075 1.22764 0.99274 0.85846 0.94562 1.86466 1.87759 1.33158 1.30122 1.20945 1.00648 0.81936 0.93495 1.22766 0.99134 0.97900 0.98941 1.22986 0.93099 1.02170 1.02427 1.22923 1.04718 0.91114 1.03032 0.92190 0.89573 0.89410 0.89826 0.88627 0.92758 0.92891 0.77645 0.89628 0.90158 0.88092 0.88407 0.89157 0.89111 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.30 29.55 -169.99 -5.02 16.27 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -15.21 9.50 30.94 0.29 -14.91 16 8 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.09 4.71 36.01 0.17 -2.92 16 11 C 0.53 10.36 7.69 -10.98 -0.08 10.27 16 12 O -0.51 -11.94 15.44 5.56 0.09 -11.85 16 13 N -0.61 -9.11 2.44 -173.69 -0.42 -9.53 16 14 C 0.11 1.27 5.62 -4.04 -0.02 1.24 16 15 C 0.05 0.56 7.38 37.16 0.27 0.83 16 16 O -0.57 -5.80 12.48 -35.23 -0.44 -6.24 16 17 C 0.15 2.10 5.51 -4.04 -0.02 2.08 16 18 C -0.17 -2.13 6.01 -90.62 -0.54 -2.67 16 19 C -0.17 -2.18 10.18 -26.73 -0.27 -2.45 16 20 C -0.18 -1.89 10.25 -26.73 -0.27 -2.16 16 21 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 22 H 0.09 1.62 7.26 -51.92 -0.38 1.24 16 23 H 0.09 1.65 7.40 -51.92 -0.38 1.27 16 24 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 25 H 0.10 1.03 6.44 -51.93 -0.33 0.69 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.62 7.30 -51.93 -0.38 0.24 16 28 H 0.38 2.30 9.12 45.56 0.42 2.72 16 29 H 0.09 1.06 7.12 -51.92 -0.37 0.69 16 30 H 0.08 1.26 7.16 -51.93 -0.37 0.89 16 31 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.10 1.36 8.03 -51.93 -0.42 0.94 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 312.09 15.07 4.70 4.70 Total: -1.00 -34.64 312.09 -7.45 -42.09 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -4.29 Total: 2.55 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -0.58 Total: -8.69 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.31 Total: -34.97 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.35 Total: -18.09 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.64 -7.45 -42.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339770311.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.273 kcal (2) G-P(sol) polarization free energy of solvation -34.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds