Wall clock time and date at job start Sun Mar 29 2020 23:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45197 * 109.47109 * 2 1 4 4 C 1.34868 * 117.00320 * 176.78515 * 3 2 1 5 5 O 1.21598 * 119.99623 * 5.47780 * 4 3 2 6 6 C 1.46711 * 120.00394 * 185.48216 * 4 3 2 7 7 C 1.36217 * 125.44840 * 174.78077 * 6 4 3 8 8 C 1.41655 * 107.74214 * 179.97438 * 7 6 4 9 9 C 1.40045 * 133.33587 * 179.97438 * 8 7 6 10 10 C 1.36569 * 119.83071 * 180.02562 * 9 8 7 11 11 C 1.38872 * 120.60007 * 359.97438 * 10 9 8 12 12 C 1.37839 * 120.63462 * 0.29207 * 11 10 9 13 13 C 1.39085 * 119.81861 * 359.46310 * 12 11 10 14 14 N 1.37826 * 133.15224 * 180.19318 * 13 12 11 15 15 C 1.36868 * 125.62073 * 0.28629 * 14 13 12 16 16 H 1.08004 * 119.99785 * 135.89956 * 15 14 13 17 17 C 1.39021 * 120.00500 * 315.90191 * 15 14 13 18 18 N 1.31334 * 120.00558 * 157.83565 * 17 15 14 19 19 Si 1.86806 * 119.99648 * 337.83206 * 17 15 14 20 20 H 1.48500 * 109.47155 * 95.71425 * 19 17 15 21 21 H 1.48493 * 109.47267 * 215.71611 * 19 17 15 22 22 H 1.48504 * 109.47154 * 335.71625 * 19 17 15 23 23 H 1.09003 * 109.47382 * 304.38241 * 1 2 3 24 24 H 1.09008 * 109.46803 * 64.37521 * 1 2 3 25 25 H 1.08997 * 109.47204 * 184.37411 * 1 2 3 26 26 H 1.08996 * 109.46696 * 240.00420 * 2 1 3 27 27 H 1.08998 * 109.46797 * 120.00084 * 2 1 3 28 28 H 1.07997 * 126.12837 * 0.04066 * 7 6 4 29 29 H 1.07998 * 120.08699 * 359.97438 * 9 8 7 30 30 H 1.07998 * 119.70151 * 180.02562 * 10 9 8 31 31 H 1.07993 * 119.67761 * 180.02562 * 11 10 9 32 32 H 1.08004 * 120.08927 * 179.65987 * 12 11 10 33 33 H 0.97005 * 120.00548 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3493 1.5463 0.0674 5 8 4.0932 0.5854 0.0241 6 6 3.9043 2.8986 0.1930 7 6 5.2211 3.1988 0.3704 8 6 5.3364 4.6088 0.4428 9 6 6.4219 5.4767 0.6149 10 6 6.2146 6.8262 0.6448 11 6 4.9353 7.3482 0.5053 12 6 3.8505 6.5140 0.3402 13 6 4.0371 5.1362 0.3014 14 7 3.1746 4.0721 0.1490 15 6 1.8191 4.1622 -0.0175 16 1 1.3248 3.5548 -0.7613 17 6 1.0784 5.0354 0.7708 18 7 -0.0958 5.4564 0.3596 19 14 1.7532 5.6102 2.4152 20 1 2.4260 6.9227 2.2427 21 1 0.6385 5.7492 3.3864 22 1 2.7316 4.6155 2.9237 23 1 -0.3634 0.5803 0.8481 24 1 -0.3633 0.4445 -0.9267 25 1 -0.3633 -1.0246 0.0784 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 6.0319 2.4891 0.4418 29 1 7.4203 5.0798 0.7246 30 1 7.0533 7.4936 0.7772 31 1 4.7885 8.4178 0.5307 32 1 2.8587 6.9292 0.2381 33 1 -0.6124 6.0660 0.9095 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000106945.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:51 Heat of formation + Delta-G solvation = -26.190929 kcal Electronic energy + Delta-G solvation = -19247.211445 eV Core-core repulsion = 16238.617955 eV Total energy + Delta-G solvation = -3008.593490 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.100 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.81189 -39.35197 -36.29891 -35.92838 -33.59064 -31.44130 -31.31923 -29.30968 -28.43220 -24.94212 -24.24126 -22.29884 -21.17714 -20.63062 -19.27553 -18.31071 -17.24346 -16.12555 -15.90410 -15.63786 -15.18789 -14.49129 -14.05220 -13.71773 -13.38473 -13.20033 -13.02302 -12.78162 -12.59154 -12.23086 -12.10013 -11.56508 -11.44605 -11.24767 -11.03188 -10.98063 -10.53389 -10.29013 -10.07930 -10.03874 -9.92834 -9.46115 -8.74522 -7.44065 -7.03924 -6.96255 -4.56242 1.43463 2.43910 2.65586 2.99179 3.08754 3.20015 3.25973 3.86559 3.90289 4.09945 4.55123 4.74969 5.23855 5.28050 5.40799 5.54664 5.56910 5.68475 5.82973 5.96514 6.08128 6.13218 6.19806 6.28479 6.37703 6.56068 6.70805 6.79036 6.94519 7.15403 7.21950 7.30988 7.54651 7.57495 7.83013 8.12278 8.41828 8.66898 8.98292 10.08046 Molecular weight = 259.10amu Principal moments of inertia in cm(-1) A = 0.018944 B = 0.009729 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.677468 B = 2877.212010 C = 4027.120720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.329 6.329 4 C 0.544 3.456 5 O -0.526 6.526 6 C -0.014 4.014 7 C -0.155 4.155 8 C -0.127 4.127 9 C -0.076 4.076 10 C -0.157 4.157 11 C -0.132 4.132 12 C -0.095 4.095 13 C 0.057 3.943 14 N -0.256 5.256 15 C -0.339 4.339 16 H 0.129 0.871 17 C 0.086 3.914 18 N -0.818 5.818 19 Si 0.865 3.135 20 H -0.247 1.247 21 H -0.279 1.279 22 H -0.255 1.255 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.139 0.861 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.176 -1.909 1.318 3.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 O -0.244 6.244 4 C 0.391 3.609 5 O -0.417 6.417 6 C -0.126 4.126 7 C -0.182 4.182 8 C -0.131 4.131 9 C -0.095 4.095 10 C -0.176 4.176 11 C -0.153 4.153 12 C -0.115 4.115 13 C -0.058 4.058 14 N 0.081 4.919 15 C -0.466 4.466 16 H 0.146 0.854 17 C -0.128 4.128 18 N -0.446 5.446 19 Si 0.688 3.312 20 H -0.171 1.171 21 H -0.205 1.205 22 H -0.178 1.178 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.157 0.843 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.137 0.863 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.705 -2.150 1.243 3.672 hybrid contribution -0.016 0.104 0.788 0.795 sum 2.688 -2.045 2.031 3.941 Atomic orbital electron populations 1.21758 0.92900 1.02042 1.03990 1.22935 0.95348 0.81347 1.01787 1.86914 1.23554 1.30395 1.83566 1.19994 0.80495 0.88118 0.72268 1.90790 1.60504 1.41618 1.48821 1.19245 0.91917 0.83972 1.17513 1.20396 0.93737 0.93804 1.10216 1.17931 0.92773 0.92930 1.09508 1.20156 0.96645 0.92588 1.00122 1.20368 0.96465 0.94749 1.06020 1.20593 0.92261 0.98337 1.04070 1.20195 0.99243 0.90163 1.01865 1.18419 0.89197 0.89569 1.08603 1.40398 1.05879 1.01854 1.43804 1.19478 0.78510 1.26640 1.22011 0.85372 1.25446 0.95036 0.93955 0.98387 1.69712 1.12069 1.26141 1.36661 0.86984 0.79674 0.81841 0.82715 1.17140 1.20457 1.17844 0.91244 0.91485 0.90941 0.91774 0.91837 0.84273 0.87055 0.87196 0.86892 0.86342 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 10.29 37.16 0.38 -1.66 16 2 C 0.06 0.98 6.20 37.16 0.23 1.21 16 3 O -0.33 -7.01 8.18 -40.95 -0.33 -7.34 16 4 C 0.54 12.31 7.90 34.15 0.27 12.58 16 5 O -0.53 -11.94 16.65 -19.34 -0.32 -12.26 16 6 C -0.01 -0.33 6.76 -82.27 -0.56 -0.88 16 7 C -0.15 -3.40 10.55 -39.01 -0.41 -3.81 16 8 C -0.13 -2.78 6.16 -106.89 -0.66 -3.44 16 9 C -0.08 -1.41 10.06 -39.51 -0.40 -1.81 16 10 C -0.16 -2.72 9.97 -39.95 -0.40 -3.12 16 11 C -0.13 -2.47 10.02 -39.49 -0.40 -2.86 16 12 C -0.10 -2.09 7.04 -39.41 -0.28 -2.37 16 13 C 0.06 1.34 5.21 -83.83 -0.44 0.91 16 14 N -0.26 -6.42 2.37 -56.10 -0.13 -6.56 16 15 C -0.34 -8.85 8.93 -15.01 -0.13 -8.99 16 16 H 0.13 3.52 7.34 -52.48 -0.39 3.14 16 17 C 0.09 2.20 4.81 -17.47 -0.08 2.12 16 18 N -0.82 -21.07 13.95 55.50 0.77 -20.29 16 19 Si 0.86 20.08 24.72 -169.99 -4.20 15.87 16 20 H -0.25 -5.45 5.87 56.52 0.33 -5.12 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 22 H -0.25 -6.32 7.11 56.52 0.40 -5.92 16 23 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 28 H 0.14 2.72 8.06 -52.49 -0.42 2.29 16 29 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.12 2.66 6.19 -52.48 -0.32 2.33 16 33 H 0.29 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 284.61 15.07 4.29 4.29 Total: -1.00 -28.28 284.61 -6.51 -34.80 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -3.72 Total: 3.61 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -2.87 Total: -12.12 kcal Atomic # 7 Polarization: -27.49 SS G_CDS: 0.64 Total: -26.85 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.66 Total: -19.60 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.20 Total: 15.87 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.28 -6.51 -34.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000106945.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.604 kcal (2) G-P(sol) polarization free energy of solvation -28.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds