Wall clock time and date at job start Sun Mar 29 2020 23:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45197 * 109.47109 * 2 1 4 4 C 1.34868 * 117.00320 * 176.78515 * 3 2 1 5 5 O 1.21598 * 119.99623 * 5.47780 * 4 3 2 6 6 C 1.46711 * 120.00394 * 185.48216 * 4 3 2 7 7 C 1.36217 * 125.44840 * 174.78077 * 6 4 3 8 8 C 1.41655 * 107.74214 * 179.97438 * 7 6 4 9 9 C 1.40045 * 133.33587 * 179.97438 * 8 7 6 10 10 C 1.36569 * 119.83071 * 180.02562 * 9 8 7 11 11 C 1.38872 * 120.60007 * 359.97438 * 10 9 8 12 12 C 1.37839 * 120.63462 * 0.29207 * 11 10 9 13 13 C 1.39085 * 119.81861 * 359.46310 * 12 11 10 14 14 N 1.37826 * 133.15224 * 180.19318 * 13 12 11 15 15 C 1.36868 * 125.62073 * 0.28629 * 14 13 12 16 16 H 1.08004 * 119.99785 * 135.89956 * 15 14 13 17 17 C 1.39021 * 120.00500 * 315.90191 * 15 14 13 18 18 N 1.31334 * 120.00558 * 157.83565 * 17 15 14 19 19 Si 1.86806 * 119.99648 * 337.83206 * 17 15 14 20 20 H 1.48500 * 109.47155 * 95.71425 * 19 17 15 21 21 H 1.48493 * 109.47267 * 215.71611 * 19 17 15 22 22 H 1.48504 * 109.47154 * 335.71625 * 19 17 15 23 23 H 1.09003 * 109.47382 * 304.38241 * 1 2 3 24 24 H 1.09008 * 109.46803 * 64.37521 * 1 2 3 25 25 H 1.08997 * 109.47204 * 184.37411 * 1 2 3 26 26 H 1.08996 * 109.46696 * 240.00420 * 2 1 3 27 27 H 1.08998 * 109.46797 * 120.00084 * 2 1 3 28 28 H 1.07997 * 126.12837 * 0.04066 * 7 6 4 29 29 H 1.07998 * 120.08699 * 359.97438 * 9 8 7 30 30 H 1.07998 * 119.70151 * 180.02562 * 10 9 8 31 31 H 1.07993 * 119.67761 * 180.02562 * 11 10 9 32 32 H 1.08004 * 120.08927 * 179.65987 * 12 11 10 33 33 H 0.97005 * 120.00548 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3493 1.5463 0.0674 5 8 4.0932 0.5854 0.0241 6 6 3.9043 2.8986 0.1930 7 6 5.2211 3.1988 0.3704 8 6 5.3364 4.6088 0.4428 9 6 6.4219 5.4767 0.6149 10 6 6.2146 6.8262 0.6448 11 6 4.9353 7.3482 0.5053 12 6 3.8505 6.5140 0.3402 13 6 4.0371 5.1362 0.3014 14 7 3.1746 4.0721 0.1490 15 6 1.8191 4.1622 -0.0175 16 1 1.3248 3.5548 -0.7613 17 6 1.0784 5.0354 0.7708 18 7 -0.0958 5.4564 0.3596 19 14 1.7532 5.6102 2.4152 20 1 2.4260 6.9227 2.2427 21 1 0.6385 5.7492 3.3864 22 1 2.7316 4.6155 2.9237 23 1 -0.3634 0.5803 0.8481 24 1 -0.3633 0.4445 -0.9267 25 1 -0.3633 -1.0246 0.0784 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 6.0319 2.4891 0.4418 29 1 7.4203 5.0798 0.7246 30 1 7.0533 7.4936 0.7772 31 1 4.7885 8.4178 0.5307 32 1 2.8587 6.9292 0.2381 33 1 -0.6124 6.0660 0.9095 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000106945.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:51 Heat of formation + Delta-G solvation = -41.266582 kcal Electronic energy + Delta-G solvation = -19247.865174 eV Core-core repulsion = 16238.617955 eV Total energy + Delta-G solvation = -3009.247219 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.100 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.50625 -41.01758 -37.86986 -37.59242 -35.42361 -33.14970 -32.65620 -30.89946 -30.06324 -26.76406 -25.80310 -23.67018 -22.82182 -22.22313 -21.00602 -20.08508 -18.90702 -17.82625 -17.51562 -17.32644 -16.70178 -16.26329 -15.72575 -15.25331 -15.02983 -14.84745 -14.69371 -14.35614 -14.09527 -13.70908 -13.59585 -13.20229 -12.99080 -12.82791 -12.51949 -12.47667 -12.29559 -11.99555 -11.77819 -11.54219 -11.50824 -11.28859 -10.47193 -9.09628 -8.86760 -8.70046 -6.49935 -0.21361 0.85919 1.00224 1.16379 1.22297 1.32203 1.71261 2.01421 2.13255 2.37944 2.72828 3.12742 3.82173 3.98199 4.00533 4.07592 4.28444 4.29796 4.35097 4.54989 4.62106 4.72119 4.80398 4.87917 5.01141 5.07953 5.09114 5.25231 5.37915 5.39080 5.67628 5.77608 5.82079 5.94283 6.08550 6.38357 6.66241 6.85393 7.16508 8.23676 Molecular weight = 259.10amu Principal moments of inertia in cm(-1) A = 0.018944 B = 0.009729 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.677468 B = 2877.212010 C = 4027.120720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 O -0.348 6.348 4 C 0.542 3.458 5 O -0.534 6.534 6 C -0.044 4.044 7 C -0.143 4.143 8 C -0.146 4.146 9 C -0.070 4.070 10 C -0.150 4.150 11 C -0.107 4.107 12 C -0.139 4.139 13 C 0.041 3.959 14 N -0.283 5.283 15 C -0.354 4.354 16 H 0.096 0.904 17 C 0.062 3.938 18 N -0.854 5.854 19 Si 0.909 3.091 20 H -0.227 1.227 21 H -0.269 1.269 22 H -0.282 1.282 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.113 0.887 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.163 0.837 29 H 0.150 0.850 30 H 0.159 0.841 31 H 0.148 0.852 32 H 0.103 0.897 33 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.740 -0.821 2.191 6.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.024 4.024 3 O -0.264 6.264 4 C 0.390 3.610 5 O -0.426 6.426 6 C -0.155 4.155 7 C -0.170 4.170 8 C -0.151 4.151 9 C -0.089 4.089 10 C -0.168 4.168 11 C -0.127 4.127 12 C -0.159 4.159 13 C -0.073 4.073 14 N 0.052 4.948 15 C -0.481 4.481 16 H 0.114 0.886 17 C -0.149 4.149 18 N -0.484 5.484 19 Si 0.732 3.268 20 H -0.151 1.151 21 H -0.194 1.194 22 H -0.207 1.207 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.131 0.869 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.181 0.819 29 H 0.167 0.833 30 H 0.177 0.823 31 H 0.166 0.834 32 H 0.121 0.879 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.251 -1.055 2.109 5.756 hybrid contribution -0.576 -0.238 0.467 0.779 sum 4.675 -1.293 2.576 5.492 Atomic orbital electron populations 1.21788 0.90887 1.04260 1.02990 1.23358 0.96960 0.79294 1.02776 1.86912 1.22927 1.33429 1.83145 1.19987 0.80971 0.87918 0.72111 1.90755 1.60700 1.41658 1.49458 1.19708 0.92870 0.84484 1.18474 1.20790 0.93495 0.94645 1.08067 1.18368 0.93265 0.93215 1.10204 1.20653 0.97245 0.92825 0.98143 1.20923 0.97210 0.94978 1.03704 1.21155 0.91872 0.99811 0.99887 1.20324 1.00001 0.89971 1.05618 1.18952 0.89933 0.90232 1.08138 1.40381 1.05487 1.02618 1.46359 1.19122 0.79629 1.27157 1.22176 0.88618 1.25827 0.95102 0.94025 0.99983 1.69736 1.13129 1.27736 1.37825 0.86351 0.78855 0.81537 0.80095 1.15073 1.19435 1.20676 0.92594 0.92198 0.86889 0.90684 0.90865 0.81934 0.83264 0.82328 0.83391 0.87881 0.89596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 10.29 71.98 0.74 -3.15 16 2 C 0.05 1.63 6.20 71.98 0.45 2.08 16 3 O -0.35 -15.54 8.18 -57.81 -0.47 -16.02 16 4 C 0.54 25.28 7.90 70.04 0.55 25.83 16 5 O -0.53 -24.38 16.65 19.52 0.32 -24.05 16 6 C -0.04 -2.15 6.76 39.87 0.27 -1.88 16 7 C -0.14 -6.15 10.55 22.64 0.24 -5.91 16 8 C -0.15 -6.13 6.16 -21.34 -0.13 -6.27 16 9 C -0.07 -2.28 10.06 22.32 0.22 -2.05 16 10 C -0.15 -4.33 9.97 22.03 0.22 -4.11 16 11 C -0.11 -3.56 10.02 22.33 0.22 -3.34 16 12 C -0.14 -5.96 7.04 22.38 0.16 -5.80 16 13 C 0.04 1.96 5.21 39.07 0.20 2.16 16 14 N -0.28 -14.68 2.37 -331.41 -0.78 -15.47 16 15 C -0.35 -19.55 8.93 84.10 0.75 -18.80 16 16 H 0.10 5.72 7.34 -2.91 -0.02 5.70 16 17 C 0.06 3.29 4.81 84.96 0.41 3.70 16 18 N -0.85 -45.90 13.95 21.67 0.30 -45.60 16 19 Si 0.91 42.24 24.72 68.60 1.70 43.94 16 20 H -0.23 -9.70 5.87 99.48 0.58 -9.11 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 22 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 23 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 25 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.07 2.25 8.13 -2.39 -0.02 2.24 16 28 H 0.16 6.03 8.06 -2.91 -0.02 6.01 16 29 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 30 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 31 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16 32 H 0.10 4.66 6.19 -2.91 -0.02 4.64 16 33 H 0.29 14.34 8.31 -92.70 -0.77 13.57 16 Total: -1.00 -64.23 284.61 6.37 -57.86 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 1.00 Total: 16.86 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 4.31 Total: -17.53 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: -0.48 Total: -61.07 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -0.15 Total: -40.07 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.70 Total: 43.94 kcal Total: -64.23 6.37 -57.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000106945.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.596 kcal (2) G-P(sol) polarization free energy of solvation -64.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds