Wall clock time and date at job start Sun Mar 29 2020 23:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86806 * 120.00377 * 2 1 4 4 H 1.48497 * 109.47204 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46959 * 299.99840 * 3 2 1 6 6 H 1.48503 * 109.47007 * 59.99984 * 3 2 1 7 7 C 1.40050 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99920 * 180.02562 * 7 2 1 9 9 C 1.46375 * 119.99976 * 359.97438 * 7 2 1 10 10 O 1.21682 * 120.00100 * 0.02562 * 9 7 2 11 11 N 1.34780 * 120.00002 * 180.02562 * 9 7 2 12 12 C 1.46495 * 119.99937 * 179.97438 * 11 9 7 13 13 C 1.53002 * 109.47143 * 179.97438 * 12 11 9 14 14 C 1.50697 * 109.47121 * 179.97438 * 13 12 11 15 15 N 1.30110 * 124.95422 * 304.97979 * 14 13 12 16 16 C 1.35787 * 109.64483 * 180.02562 * 15 14 13 17 17 C 1.39735 * 133.60090 * 179.97438 * 16 15 14 18 18 C 1.36603 * 119.88474 * 179.72469 * 17 16 15 19 19 C 1.38783 * 120.66827 * 0.28758 * 18 17 16 20 20 C 1.37847 * 120.45027 * 359.96769 * 19 18 17 21 21 C 1.38834 * 119.69200 * 0.03175 * 20 19 18 22 22 N 1.36051 * 124.94724 * 125.59800 * 14 13 12 23 23 H 0.97004 * 126.34652 * 359.39556 * 22 14 13 24 24 H 0.97008 * 119.99497 * 359.97438 * 1 2 3 25 25 H 0.97000 * 119.99819 * 0.02562 * 11 9 7 26 26 H 1.08996 * 109.46839 * 60.00153 * 12 11 9 27 27 H 1.08999 * 109.47476 * 300.00194 * 12 11 9 28 28 H 1.09003 * 109.46475 * 60.00192 * 13 12 11 29 29 H 1.08999 * 109.47127 * 300.00450 * 13 12 11 30 30 H 1.08002 * 120.06112 * 0.02562 * 17 16 15 31 31 H 1.07994 * 119.66831 * 180.30197 * 18 17 16 32 32 H 1.08003 * 119.77014 * 180.02562 * 19 18 17 33 33 H 1.08001 * 120.15211 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7007 1.3463 0.0006 5 1 1.8821 2.3964 -1.2126 6 1 1.8821 2.3964 1.2125 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0001 9 6 1.2749 -2.4805 -0.0005 10 8 0.0581 -2.4805 -0.0005 11 7 1.9488 -3.6478 -0.0005 12 6 1.2162 -4.9164 0.0000 13 6 2.2104 -6.0794 -0.0007 14 6 1.4568 -7.3844 0.0005 15 7 0.5556 -7.7240 0.8753 16 6 0.0788 -8.9613 0.5828 17 6 -0.8767 -9.7908 1.1757 18 6 -1.1492 -11.0132 0.6303 19 6 -0.4817 -11.4457 -0.5070 20 6 0.4685 -10.6464 -1.1057 21 6 0.7587 -9.4008 -0.5655 22 7 1.6283 -8.3842 -0.9062 23 1 2.2403 -8.3791 -1.6588 24 1 -0.4850 0.8402 0.0004 25 1 2.9188 -3.6478 -0.0002 26 1 0.5893 -4.9743 -0.8897 27 1 0.5899 -4.9740 0.8902 28 1 2.8377 -6.0216 0.8888 29 1 2.8364 -6.0217 -0.8912 30 1 -1.4022 -9.4641 2.0609 31 1 -1.8918 -11.6495 1.0886 32 1 -0.7089 -12.4148 -0.9262 33 1 0.9847 -10.9876 -1.9909 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011804607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:57 Heat of formation + Delta-G solvation = 23.021358 kcal Electronic energy + Delta-G solvation = -17706.921606 eV Core-core repulsion = 14732.754873 eV Total energy + Delta-G solvation = -2974.166734 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.106 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.17525 -37.68636 -37.16364 -34.17951 -33.18441 -32.40231 -30.91458 -30.05441 -28.26751 -26.23225 -23.47353 -22.41361 -22.01866 -20.57255 -19.69032 -17.95204 -17.27125 -17.13077 -15.65157 -15.43196 -15.17218 -14.52854 -14.34192 -14.26043 -13.99327 -13.94869 -12.86316 -12.48279 -12.39094 -12.11152 -11.89153 -11.62540 -11.32382 -11.14566 -11.09252 -10.79161 -10.64754 -10.45073 -10.18401 -9.93165 -8.84534 -8.46362 -8.18277 -7.60038 -7.51090 -6.16961 -4.62656 0.86797 1.42488 2.71750 2.79906 3.14218 3.22140 3.26525 3.80613 4.04725 4.14080 4.45544 4.61213 4.80851 4.90730 5.01840 5.15225 5.29689 5.34767 5.42474 5.43317 5.62565 5.68641 5.82845 5.95886 6.27894 6.39874 6.45054 6.48734 6.64721 6.79640 7.24444 7.44932 7.89635 7.92968 8.07839 8.33248 9.03992 9.53769 10.61940 10.80435 Molecular weight = 259.11amu Principal moments of inertia in cm(-1) A = 0.057471 B = 0.003279 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.088154 B = 8536.453408 C = 8804.520014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.086 3.914 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.578 6.578 11 N -0.769 5.769 12 C 0.143 3.857 13 C -0.054 4.054 14 C 0.302 3.698 15 N -0.484 5.484 16 C 0.050 3.950 17 C -0.064 4.064 18 C -0.131 4.131 19 C -0.108 4.108 20 C -0.112 4.112 21 C 0.042 3.958 22 N -0.600 5.600 23 H 0.422 0.578 24 H 0.268 0.732 25 H 0.380 0.620 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.635 -19.925 -2.278 20.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.087 0.913 9 C 0.358 3.642 10 O -0.460 6.460 11 N -0.426 5.426 12 C 0.017 3.983 13 C -0.093 4.093 14 C 0.035 3.965 15 N -0.204 5.204 16 C -0.069 4.069 17 C -0.083 4.083 18 C -0.152 4.152 19 C -0.127 4.127 20 C -0.133 4.133 21 C -0.068 4.068 22 N -0.211 5.211 23 H 0.260 0.740 24 H 0.078 0.922 25 H 0.211 0.789 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.119 0.881 29 H 0.104 0.896 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.221 -19.349 -1.536 19.675 hybrid contribution 1.508 0.251 -1.141 1.908 sum 4.729 -19.097 -2.677 19.856 Atomic orbital electron populations 1.70037 1.07066 1.27149 1.35366 1.25722 0.94621 1.00321 0.92667 0.86314 0.80431 0.81776 0.78193 1.18799 1.20212 1.20164 1.20906 0.93578 0.89310 1.54425 0.91346 1.18237 0.87239 0.82342 0.76379 1.90614 1.14116 1.86745 1.54574 1.46141 1.08483 1.04770 1.83164 1.20713 0.93151 0.82405 1.02019 1.20465 0.97517 0.87025 1.04303 1.23560 0.95282 0.91472 0.86210 1.70494 1.11966 1.12082 1.25869 1.19183 0.99667 0.92767 0.95241 1.20072 0.95745 0.92736 0.99746 1.20625 1.01188 0.96249 0.97122 1.20845 0.96270 0.99381 0.96223 1.19929 1.00758 0.91532 1.01053 1.18906 0.96195 0.92325 0.99372 1.43137 1.35543 1.14665 1.27760 0.73956 0.92152 0.78894 0.93347 0.91645 0.88075 0.89611 0.85273 0.85469 0.85462 0.86138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.29 11.83 55.55 0.66 -22.63 16 2 C 0.09 2.42 5.50 -17.37 -0.10 2.33 16 3 Si 0.91 20.14 29.56 -169.99 -5.02 15.11 16 4 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.55 -15.40 9.54 -35.63 -0.34 -15.74 16 8 H 0.07 1.75 7.85 -52.48 -0.41 1.34 16 9 C 0.55 15.91 7.75 -12.99 -0.10 15.81 16 10 O -0.58 -19.17 15.02 5.20 0.08 -19.09 16 11 N -0.77 -16.93 5.55 -61.73 -0.34 -17.28 16 12 C 0.14 2.78 5.61 -4.04 -0.02 2.76 16 13 C -0.05 -0.72 5.96 -27.88 -0.17 -0.89 16 14 C 0.30 4.38 7.37 -154.81 -1.14 3.24 16 15 N -0.48 -8.30 11.21 -8.23 -0.09 -8.39 16 16 C 0.05 0.76 7.23 -84.70 -0.61 0.15 16 17 C -0.06 -0.81 10.05 -39.61 -0.40 -1.21 16 18 C -0.13 -1.31 9.96 -39.97 -0.40 -1.71 16 19 C -0.11 -0.99 10.03 -39.52 -0.40 -1.39 16 20 C -0.11 -1.14 10.07 -39.50 -0.40 -1.54 16 21 C 0.04 0.55 7.30 -83.99 -0.61 -0.07 16 22 N -0.60 -7.03 6.23 -8.00 -0.05 -7.08 16 23 H 0.42 3.36 8.96 -40.82 -0.37 3.00 16 24 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 25 H 0.38 7.01 8.45 -40.82 -0.35 6.66 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 28 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 295.45 15.07 4.45 4.45 Total: -1.00 -37.59 295.45 -8.64 -46.23 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -3.64 Total: 6.91 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: -4.68 Total: 1.75 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.17 Total: -55.37 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.08 Total: -19.09 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -37.59 -8.64 -46.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011804607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.256 kcal (2) G-P(sol) polarization free energy of solvation -37.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds