Wall clock time and date at job start Sun Mar 29 2020 23:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42101 * 109.46843 * 2 1 4 4 C 1.81400 * 103.00034 * 243.61140 * 2 1 3 5 5 C 1.53001 * 115.54872 * 295.57161 * 4 2 1 6 6 N 1.46491 * 109.46959 * 272.14985 * 5 4 2 7 7 C 1.34779 * 120.00184 * 184.33466 * 6 5 4 8 8 O 1.21276 * 120.00084 * 359.72722 * 7 6 5 9 9 C 1.50710 * 120.00046 * 180.02562 * 7 6 5 10 10 C 1.52994 * 109.46900 * 179.72401 * 9 7 6 11 11 C 1.50698 * 109.47112 * 179.97438 * 10 9 7 12 12 H 1.08005 * 120.00107 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00007 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00205 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99662 * 180.02562 * 13 11 10 16 16 H 1.48490 * 109.47534 * 59.99989 * 15 13 11 17 17 H 1.48501 * 109.46879 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46921 * 299.99861 * 15 13 11 19 19 C 1.53006 * 117.51513 * 81.26775 * 4 2 1 20 20 C 1.53001 * 117.49874 * 149.89471 * 4 2 1 21 21 H 1.08995 * 109.46976 * 182.24265 * 1 2 3 22 22 H 1.09005 * 109.47215 * 302.24579 * 1 2 3 23 23 H 1.08998 * 109.46984 * 62.24241 * 1 2 3 24 24 H 1.09000 * 109.47175 * 152.15263 * 5 4 2 25 25 H 1.08999 * 109.47047 * 32.15322 * 5 4 2 26 26 H 0.97006 * 119.99924 * 4.33799 * 6 5 4 27 27 H 1.08996 * 109.46936 * 299.72972 * 9 7 6 28 28 H 1.08997 * 109.46717 * 59.72444 * 9 7 6 29 29 H 1.08999 * 109.47179 * 300.00451 * 10 9 7 30 30 H 1.09003 * 109.46978 * 60.00338 * 10 9 7 31 31 H 0.96999 * 120.00500 * 179.97438 * 14 13 11 32 32 H 1.09004 * 117.49752 * 214.97100 * 19 4 2 33 33 H 1.08998 * 117.50192 * 359.97438 * 19 4 2 34 34 H 1.08991 * 117.50106 * 359.97438 * 20 4 2 35 35 H 1.08999 * 117.49475 * 144.99904 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2221 -0.7856 -1.5833 5 6 1.7900 -2.2464 -1.7259 6 7 2.8452 -3.1205 -1.2079 7 6 2.7225 -4.4588 -1.3103 8 8 1.7361 -4.9395 -1.8268 9 6 3.8079 -5.3580 -0.7769 10 6 3.4204 -6.8194 -1.0115 11 6 4.5060 -7.7187 -0.4787 12 1 5.3843 -7.2906 -0.0183 13 6 4.3775 -9.0879 -0.5779 14 7 3.3079 -9.6091 -1.1380 15 14 5.7229 -10.2025 0.0832 16 1 5.8937 -9.9628 1.5386 17 1 5.3469 -11.6209 -0.1446 18 1 6.9979 -9.9099 -0.6196 19 6 2.1804 0.0892 -2.8380 20 6 3.5250 -0.3643 -2.2659 21 1 -0.3633 -1.0268 0.0402 22 1 -0.3634 0.5483 0.8692 23 1 -0.3633 0.4786 -0.9094 24 1 1.6147 -2.4724 -2.7777 25 1 0.8723 -2.4105 -1.1612 26 1 3.6324 -2.7361 -0.7912 27 1 4.7438 -5.1430 -1.2923 28 1 3.9328 -5.1823 0.2915 29 1 2.4844 -7.0344 -0.4960 30 1 3.2955 -6.9951 -2.0800 31 1 3.2176 -10.5723 -1.2082 32 1 1.8452 -0.3760 -3.7650 33 1 1.9073 1.1369 -2.7122 34 1 4.1367 0.3851 -1.7639 35 1 4.0744 -1.1279 -2.8165 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117658004.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:09 Heat of formation + Delta-G solvation = -59.429173 kcal Electronic energy + Delta-G solvation = -16953.536400 eV Core-core repulsion = 14078.945544 eV Total energy + Delta-G solvation = -2874.590857 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 259.103 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.36094 -37.70160 -36.02680 -33.74455 -33.43165 -31.00089 -29.28363 -27.53538 -25.24141 -22.92710 -21.92256 -21.16576 -19.63667 -17.69891 -16.94303 -16.64862 -15.83994 -15.59384 -14.99875 -14.94463 -14.54540 -14.39489 -14.19437 -13.38403 -13.15991 -13.04606 -12.78199 -12.18492 -12.04810 -11.98762 -11.81128 -11.22147 -11.13677 -11.01768 -10.90346 -10.61041 -10.30243 -9.94300 -9.66168 -9.18205 -9.01195 -8.84420 -8.48257 -8.30991 -5.95387 -3.99790 1.21287 2.23128 3.06581 3.24611 3.35140 3.40060 3.41448 3.43042 3.71100 4.31776 4.42750 4.48208 4.57176 4.84561 4.98755 5.19921 5.24994 5.39650 5.45882 5.50383 5.56475 5.68150 5.72969 5.84628 6.24105 6.25617 6.67292 6.90631 7.74916 7.87124 7.88066 8.07999 8.39388 8.77008 9.08869 9.63830 11.15503 Molecular weight = 259.10amu Principal moments of inertia in cm(-1) A = 0.040678 B = 0.003572 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.163829 B = 7836.113409 C = 7878.077865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.488 4.488 2 S 1.284 4.716 3 O -0.851 6.851 4 C -0.470 4.470 5 C 0.183 3.817 6 N -0.742 5.742 7 C 0.510 3.490 8 O -0.535 6.535 9 C -0.130 4.130 10 C 0.037 3.963 11 C -0.528 4.528 12 H 0.056 0.944 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.147 4.147 20 C -0.124 4.124 21 H 0.117 0.883 22 H 0.104 0.896 23 H 0.083 0.917 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.399 0.601 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.024 0.976 30 H 0.022 0.978 31 H 0.261 0.739 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.282 19.199 2.063 19.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.646 4.646 2 S 1.481 4.519 3 O -0.847 6.847 4 C -0.567 4.567 5 C 0.057 3.943 6 N -0.397 5.397 7 C 0.299 3.701 8 O -0.410 6.410 9 C -0.170 4.170 10 C -0.001 4.001 11 C -0.566 4.566 12 H 0.074 0.926 13 C -0.143 4.143 14 N -0.529 5.529 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.186 4.186 20 C -0.162 4.162 21 H 0.136 0.864 22 H 0.123 0.877 23 H 0.102 0.898 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.233 0.767 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.122 0.878 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.497 19.016 2.320 19.319 hybrid contribution 0.108 0.660 -1.275 1.440 sum -2.389 19.675 1.045 19.847 Atomic orbital electron populations 1.27600 1.21201 1.08704 1.07059 1.70623 0.86749 0.97781 0.96764 1.93073 1.73976 1.37100 1.80514 1.29520 1.10636 1.03872 1.12660 1.20303 0.90843 0.82816 1.00289 1.46228 1.23477 1.06398 1.63597 1.21583 0.88861 0.81612 0.78070 1.90677 1.32049 1.74980 1.43342 1.21873 0.95768 0.98321 1.01079 1.18896 0.96907 0.86227 0.98073 1.21195 1.04882 0.91267 1.39260 0.92621 1.25017 0.95642 0.98305 0.95362 1.69981 1.27385 1.11759 1.43762 0.86662 0.82199 0.79689 0.79427 1.20217 1.21338 1.20291 1.22962 1.01502 0.98618 0.95481 1.22782 0.89242 1.02867 1.01316 0.86406 0.87731 0.89786 0.91256 0.90978 0.76656 0.90266 0.89970 0.95766 0.95927 0.92909 0.87787 0.88450 0.87815 0.87165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -3.41 10.51 101.05 1.06 -2.35 16 2 S 1.28 10.02 13.76 -107.50 -1.48 8.54 16 3 O -0.85 -11.39 17.90 -35.23 -0.63 -12.02 16 4 C -0.47 -4.00 2.05 -90.62 -0.19 -4.19 16 5 C 0.18 1.91 5.68 -4.05 -0.02 1.89 16 6 N -0.74 -8.78 5.43 -60.30 -0.33 -9.11 16 7 C 0.51 8.91 7.83 -10.98 -0.09 8.83 16 8 O -0.54 -11.84 15.98 5.56 0.09 -11.75 16 9 C -0.13 -2.46 5.64 -27.88 -0.16 -2.62 16 10 C 0.04 0.95 4.26 -27.89 -0.12 0.83 16 11 C -0.53 -14.59 9.11 -34.44 -0.31 -14.90 16 12 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 15 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 C -0.15 -1.31 9.85 -26.73 -0.26 -1.58 16 20 C -0.12 -1.06 9.57 -26.73 -0.26 -1.32 16 21 H 0.12 0.66 7.49 -51.93 -0.39 0.28 16 22 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 23 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 24 H 0.07 0.84 7.89 -51.93 -0.41 0.43 16 25 H 0.07 0.70 7.19 -51.93 -0.37 0.33 16 26 H 0.40 3.51 8.29 -40.82 -0.34 3.17 16 27 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 30 H 0.02 0.65 8.10 -51.93 -0.42 0.22 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.10 0.87 8.04 -51.93 -0.42 0.46 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 315.31 15.07 4.75 4.75 Total: -1.00 -37.21 315.31 -7.59 -44.80 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -5.27 Total: -1.33 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -0.44 Total: -13.84 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.41 Total: -35.40 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.54 Total: -23.77 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 10.02 SS G_CDS: -1.48 Total: 8.54 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -37.21 -7.59 -44.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117658004.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.630 kcal (2) G-P(sol) polarization free energy of solvation -37.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds