Wall clock time and date at job start Sun Mar 29 2020 23:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86801 * 120.00019 * 2 1 4 4 H 1.48497 * 109.47622 * 240.00231 * 3 2 1 5 5 H 1.48502 * 109.47214 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46906 * 120.00184 * 3 2 1 7 7 C 1.39909 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00118 * 196.82432 * 7 2 1 9 9 C 1.41149 * 119.99725 * 16.82083 * 7 2 1 10 10 C 1.40864 * 120.16318 * 205.35161 * 9 7 2 11 11 C 1.36373 * 119.83209 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.16897 * 359.97438 * 11 10 9 13 13 N 1.39233 * 119.83718 * 180.02562 * 12 11 10 14 14 C 1.34780 * 120.00126 * 34.45569 * 13 12 11 15 15 O 1.21281 * 120.00021 * 5.09657 * 14 13 12 16 16 C 1.50701 * 119.99961 * 185.10215 * 14 13 12 17 17 C 1.54268 * 110.03208 * 297.90375 * 16 14 13 18 18 C 1.54964 * 104.15706 * 217.13961 * 17 16 14 19 19 C 1.54888 * 102.78050 * 37.88973 * 18 17 16 20 20 C 1.53876 * 110.02817 * 180.69003 * 16 14 13 21 21 C 1.39484 * 120.32871 * 0.27550 * 12 11 10 22 22 C 1.36377 * 120.16888 * 359.44330 * 21 12 11 23 23 H 0.97003 * 119.99854 * 359.97438 * 1 2 3 24 24 H 1.08005 * 120.08909 * 0.02562 * 10 9 7 25 25 H 1.08002 * 119.91884 * 179.97438 * 11 10 9 26 26 H 0.97005 * 120.00503 * 214.45550 * 13 12 11 27 27 H 1.08997 * 110.01791 * 59.30126 * 16 14 13 28 28 H 1.09004 * 110.48250 * 335.78560 * 17 16 14 29 29 H 1.08999 * 110.48617 * 98.42880 * 17 16 14 30 30 H 1.09002 * 110.72016 * 279.56864 * 18 17 16 31 31 H 1.09003 * 110.91922 * 156.29744 * 18 17 16 32 32 H 1.09002 * 110.48507 * 203.40536 * 19 18 17 33 33 H 1.08999 * 110.59640 * 80.81372 * 19 18 17 34 34 H 1.09000 * 110.03024 * 238.56673 * 20 16 14 35 35 H 1.09000 * 110.03872 * 359.94721 * 20 16 14 36 36 H 1.08003 * 119.91372 * 179.72463 * 21 12 11 37 37 H 1.08007 * 120.08370 * 180.27872 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2778 2.7465 0.0006 6 1 3.0966 1.6963 1.2125 7 6 2.0083 -1.2116 -0.0005 8 1 3.0536 -1.2317 0.2702 9 6 1.3479 -2.4077 -0.3548 10 6 1.8188 -3.6453 0.1256 11 6 1.1758 -4.7968 -0.2213 12 6 0.0542 -4.7512 -1.0493 13 7 -0.5973 -5.9310 -1.3988 14 6 -0.6680 -6.9483 -0.5175 15 8 -0.2463 -6.8039 0.6104 16 6 -1.2708 -8.2653 -0.9337 17 6 -2.7512 -8.0699 -1.3211 18 6 -3.4516 -9.3502 -0.8000 19 6 -2.7203 -9.6202 0.5384 20 6 -1.2510 -9.2509 0.2479 21 6 -0.4149 -3.5300 -1.5332 22 6 0.2143 -2.3696 -1.1902 23 1 -0.4850 0.8401 0.0004 24 1 2.6868 -3.6823 0.7672 25 1 1.5358 -5.7465 0.1459 26 1 -1.0003 -6.0209 -2.2765 27 1 -0.7162 -8.6802 -1.7753 28 1 -3.1600 -7.1857 -0.8320 29 1 -2.8551 -7.9907 -2.4033 30 1 -3.3065 -10.1786 -1.4935 31 1 -4.5135 -9.1716 -0.6308 32 1 -2.8022 -10.6721 0.8124 33 1 -3.1232 -8.9882 1.3298 34 1 -0.6875 -10.1444 -0.0207 35 1 -0.8045 -8.7770 1.1220 36 1 -1.2813 -3.5029 -2.1775 37 1 -0.1528 -1.4244 -1.5620 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008125691.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:43 Heat of formation + Delta-G solvation = -35.975357 kcal Electronic energy + Delta-G solvation = -18643.616201 eV Core-core repulsion = 15770.431521 eV Total energy + Delta-G solvation = -2873.184680 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.99970 -37.81002 -36.58432 -34.42509 -32.95219 -29.85629 -29.47580 -28.68886 -28.36662 -24.93992 -22.31143 -21.13665 -20.82732 -20.24465 -19.03673 -17.41654 -17.04135 -16.39128 -15.57698 -15.19975 -14.82328 -14.22334 -13.95240 -13.59308 -13.33133 -12.91170 -12.68968 -12.10598 -11.89131 -11.59596 -11.37583 -11.32518 -11.17817 -11.10519 -11.06260 -10.99963 -10.83171 -10.71056 -10.50528 -9.96168 -9.56688 -9.32170 -9.06836 -8.84736 -7.53338 -6.96420 -6.72995 -4.29122 2.59236 3.03813 3.06620 3.10368 3.11152 3.41500 3.80328 3.93678 4.46620 4.57397 4.65608 4.79669 5.27868 5.32758 5.40617 5.50201 5.58478 5.62396 5.71221 5.77549 5.85139 6.02534 6.14391 6.21002 6.25706 6.40439 6.44023 6.80937 6.96107 7.05632 7.21187 7.30615 7.60438 7.75366 7.91526 8.04141 8.28969 8.33745 8.60376 8.81971 8.89161 9.02482 10.18810 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.051455 B = 0.003949 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.037660 B = 7088.695758 C = 7300.029829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.459 4.459 8 H 0.078 0.922 9 C 0.106 3.894 10 C -0.216 4.216 11 C -0.076 4.076 12 C -0.007 4.007 13 N -0.651 5.651 14 C 0.502 3.498 15 O -0.531 6.531 16 C -0.112 4.112 17 C -0.117 4.117 18 C -0.123 4.123 19 C -0.124 4.124 20 C -0.119 4.119 21 C -0.114 4.114 22 C -0.153 4.153 23 H 0.281 0.719 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.394 0.606 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.466 -12.263 -4.636 14.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.488 4.488 8 H 0.096 0.904 9 C 0.103 3.897 10 C -0.236 4.236 11 C -0.096 4.096 12 C -0.099 4.099 13 N -0.293 5.293 14 C 0.289 3.711 15 O -0.408 6.408 16 C -0.134 4.134 17 C -0.154 4.154 18 C -0.160 4.160 19 C -0.162 4.162 20 C -0.157 4.157 21 C -0.134 4.134 22 C -0.173 4.173 23 H 0.092 0.908 24 H 0.113 0.887 25 H 0.118 0.882 26 H 0.227 0.773 27 H 0.112 0.888 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.356 -12.013 -3.810 13.694 hybrid contribution 0.077 0.778 -0.433 0.894 sum -5.280 -11.235 -4.243 13.119 Atomic orbital electron populations 1.69840 1.07561 1.29293 1.35197 1.25923 0.94746 1.01322 0.92313 0.86347 0.80109 0.80158 0.79982 1.18825 1.20354 1.19000 1.19532 0.97796 0.91188 1.40331 0.90406 1.17648 0.91348 0.92115 0.88600 1.20650 1.03791 0.92659 1.06475 1.20226 0.93759 0.97640 0.97998 1.17181 0.98026 0.84172 1.10532 1.43011 1.55549 1.14276 1.16470 1.20511 0.79628 0.85724 0.85268 1.90657 1.48052 1.82340 1.19765 1.21927 0.97310 0.94012 1.00116 1.22385 0.93119 0.98964 1.00976 1.22501 0.99223 0.97267 0.97052 1.22358 0.95371 1.00921 0.97505 1.22152 0.97009 0.97742 0.98788 1.20230 0.99166 0.91826 1.02197 1.20896 0.99294 0.96326 1.00785 0.90820 0.88724 0.88199 0.77288 0.88828 0.90962 0.91036 0.91460 0.91511 0.91768 0.91516 0.91771 0.89070 0.89228 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.62 10.94 55.55 0.61 -20.01 16 2 C 0.07 1.88 5.15 -17.33 -0.09 1.79 16 3 Si 0.91 18.70 29.59 -169.99 -5.03 13.67 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.46 -12.31 9.04 -37.85 -0.34 -12.65 16 8 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 9 C 0.11 2.87 5.57 -106.80 -0.59 2.27 16 10 C -0.22 -5.58 9.74 -39.26 -0.38 -5.96 16 11 C -0.08 -1.87 8.57 -39.79 -0.34 -2.21 16 12 C -0.01 -0.16 6.27 -83.57 -0.52 -0.68 16 13 N -0.65 -11.71 5.26 -9.74 -0.05 -11.76 16 14 C 0.50 8.93 6.72 -10.98 -0.07 8.86 16 15 O -0.53 -11.75 12.93 5.56 0.07 -11.68 16 16 C -0.11 -1.41 3.30 -90.65 -0.30 -1.71 16 17 C -0.12 -1.24 6.24 -25.03 -0.16 -1.39 16 18 C -0.12 -1.13 6.91 -24.70 -0.17 -1.30 16 19 C -0.12 -1.29 6.83 -25.07 -0.17 -1.46 16 20 C -0.12 -1.47 6.40 -25.61 -0.16 -1.63 16 21 C -0.11 -2.65 9.89 -39.79 -0.39 -3.04 16 22 C -0.15 -3.98 8.63 -39.26 -0.34 -4.32 16 23 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 24 H 0.09 2.33 8.06 -52.48 -0.42 1.90 16 25 H 0.10 2.41 6.47 -52.49 -0.34 2.07 16 26 H 0.39 5.60 8.73 -40.82 -0.36 5.25 16 27 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 0.89 7.85 -51.93 -0.41 0.48 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.39 6.39 -51.93 -0.33 1.06 16 36 H 0.09 1.82 8.06 -52.48 -0.42 1.39 16 37 H 0.12 3.20 6.17 -52.48 -0.32 2.88 16 LS Contribution 304.22 15.07 4.58 4.58 Total: -1.00 -30.13 304.22 -8.97 -39.10 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -5.11 Total: 9.55 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: -4.04 Total: -23.44 kcal Atomic # 7 Polarization: -32.33 SS G_CDS: 0.56 Total: -31.77 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.07 Total: -11.68 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.13 -8.97 -39.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008125691.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.127 kcal (2) G-P(sol) polarization free energy of solvation -30.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds