Wall clock time and date at job start Sun Mar 29 2020 23:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86801 * 120.00019 * 2 1 4 4 H 1.48497 * 109.47622 * 240.00231 * 3 2 1 5 5 H 1.48502 * 109.47214 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46906 * 120.00184 * 3 2 1 7 7 C 1.39909 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00118 * 196.82432 * 7 2 1 9 9 C 1.41149 * 119.99725 * 16.82083 * 7 2 1 10 10 C 1.40864 * 120.16318 * 205.35161 * 9 7 2 11 11 C 1.36373 * 119.83209 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.16897 * 359.97438 * 11 10 9 13 13 N 1.39233 * 119.83718 * 180.02562 * 12 11 10 14 14 C 1.34780 * 120.00126 * 34.45569 * 13 12 11 15 15 O 1.21281 * 120.00021 * 5.09657 * 14 13 12 16 16 C 1.50701 * 119.99961 * 185.10215 * 14 13 12 17 17 C 1.54268 * 110.03208 * 297.90375 * 16 14 13 18 18 C 1.54964 * 104.15706 * 217.13961 * 17 16 14 19 19 C 1.54888 * 102.78050 * 37.88973 * 18 17 16 20 20 C 1.53876 * 110.02817 * 180.69003 * 16 14 13 21 21 C 1.39484 * 120.32871 * 0.27550 * 12 11 10 22 22 C 1.36377 * 120.16888 * 359.44330 * 21 12 11 23 23 H 0.97003 * 119.99854 * 359.97438 * 1 2 3 24 24 H 1.08005 * 120.08909 * 0.02562 * 10 9 7 25 25 H 1.08002 * 119.91884 * 179.97438 * 11 10 9 26 26 H 0.97005 * 120.00503 * 214.45550 * 13 12 11 27 27 H 1.08997 * 110.01791 * 59.30126 * 16 14 13 28 28 H 1.09004 * 110.48250 * 335.78560 * 17 16 14 29 29 H 1.08999 * 110.48617 * 98.42880 * 17 16 14 30 30 H 1.09002 * 110.72016 * 279.56864 * 18 17 16 31 31 H 1.09003 * 110.91922 * 156.29744 * 18 17 16 32 32 H 1.09002 * 110.48507 * 203.40536 * 19 18 17 33 33 H 1.08999 * 110.59640 * 80.81372 * 19 18 17 34 34 H 1.09000 * 110.03024 * 238.56673 * 20 16 14 35 35 H 1.09000 * 110.03872 * 359.94721 * 20 16 14 36 36 H 1.08003 * 119.91372 * 179.72463 * 21 12 11 37 37 H 1.08007 * 120.08370 * 180.27872 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2778 2.7465 0.0006 6 1 3.0966 1.6963 1.2125 7 6 2.0083 -1.2116 -0.0005 8 1 3.0536 -1.2317 0.2702 9 6 1.3479 -2.4077 -0.3548 10 6 1.8188 -3.6453 0.1256 11 6 1.1758 -4.7968 -0.2213 12 6 0.0542 -4.7512 -1.0493 13 7 -0.5973 -5.9310 -1.3988 14 6 -0.6680 -6.9483 -0.5175 15 8 -0.2463 -6.8039 0.6104 16 6 -1.2708 -8.2653 -0.9337 17 6 -2.7512 -8.0699 -1.3211 18 6 -3.4516 -9.3502 -0.8000 19 6 -2.7203 -9.6202 0.5384 20 6 -1.2510 -9.2509 0.2479 21 6 -0.4149 -3.5300 -1.5332 22 6 0.2143 -2.3696 -1.1902 23 1 -0.4850 0.8401 0.0004 24 1 2.6868 -3.6823 0.7672 25 1 1.5358 -5.7465 0.1459 26 1 -1.0003 -6.0209 -2.2765 27 1 -0.7162 -8.6802 -1.7753 28 1 -3.1600 -7.1857 -0.8320 29 1 -2.8551 -7.9907 -2.4033 30 1 -3.3065 -10.1786 -1.4935 31 1 -4.5135 -9.1716 -0.6308 32 1 -2.8022 -10.6721 0.8124 33 1 -3.1232 -8.9882 1.3298 34 1 -0.6875 -10.1444 -0.0207 35 1 -0.8045 -8.7770 1.1220 36 1 -1.2813 -3.5029 -2.1775 37 1 -0.1528 -1.4244 -1.5620 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008125691.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:43 Heat of formation + Delta-G solvation = -53.023404 kcal Electronic energy + Delta-G solvation = -18644.355460 eV Core-core repulsion = 15770.431521 eV Total energy + Delta-G solvation = -2873.923938 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.44666 -39.41567 -37.89036 -36.18515 -34.75545 -31.55718 -31.21165 -29.85212 -29.50736 -26.75901 -23.88492 -22.93556 -22.06272 -21.47444 -20.35900 -19.30632 -18.44301 -17.98073 -17.05338 -16.60664 -16.08666 -15.77539 -15.58859 -15.00713 -14.56996 -14.42153 -14.22709 -13.99566 -13.70308 -13.24162 -12.90891 -12.78707 -12.61283 -12.47277 -12.23751 -12.01112 -11.92038 -11.75721 -11.63322 -11.45214 -11.39645 -11.14985 -10.79423 -10.53178 -9.49911 -8.86749 -8.61365 -6.29444 0.79218 1.11114 1.38686 1.46024 1.51618 1.83923 2.21271 2.38712 2.74233 3.53925 3.68995 3.71064 3.86475 4.26500 4.37728 4.46941 4.48757 4.56062 4.59491 4.69697 4.82711 4.90791 5.00709 5.09373 5.10243 5.14333 5.24005 5.26677 5.31821 5.39894 5.46964 5.49130 5.63626 5.88156 6.01735 6.09235 6.35106 6.62790 6.76162 6.91060 6.97515 7.43692 8.32162 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.051455 B = 0.003949 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.037660 B = 7088.695758 C = 7300.029829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.035 3.965 3 Si 0.986 3.014 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.498 4.498 8 H 0.075 0.925 9 C 0.075 3.925 10 C -0.235 4.235 11 C -0.089 4.089 12 C 0.006 3.994 13 N -0.643 5.643 14 C 0.499 3.501 15 O -0.580 6.580 16 C -0.103 4.103 17 C -0.115 4.115 18 C -0.115 4.115 19 C -0.125 4.125 20 C -0.123 4.123 21 C -0.113 4.113 22 C -0.171 4.171 23 H 0.290 0.710 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.416 0.584 27 H 0.125 0.875 28 H 0.050 0.950 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.124 0.876 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.719 -13.399 -6.345 16.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.180 4.180 3 Si 0.806 3.194 4 H -0.182 1.182 5 H -0.190 1.190 6 H -0.187 1.187 7 C -0.527 4.527 8 H 0.093 0.907 9 C 0.072 3.928 10 C -0.255 4.255 11 C -0.109 4.109 12 C -0.087 4.087 13 N -0.288 5.288 14 C 0.288 3.712 15 O -0.460 6.460 16 C -0.124 4.124 17 C -0.153 4.153 18 C -0.152 4.152 19 C -0.162 4.162 20 C -0.161 4.161 21 C -0.133 4.133 22 C -0.191 4.191 23 H 0.100 0.900 24 H 0.111 0.889 25 H 0.117 0.883 26 H 0.253 0.747 27 H 0.142 0.858 28 H 0.069 0.931 29 H 0.119 0.881 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.142 0.858 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.637 -13.186 -5.552 15.771 hybrid contribution 0.412 0.975 0.124 1.065 sum -6.225 -12.211 -5.428 14.742 Atomic orbital electron populations 1.69880 1.08976 1.30752 1.35430 1.26778 0.95546 1.04511 0.91136 0.85202 0.78740 0.75399 0.80043 1.18231 1.18952 1.18680 1.19782 0.98038 0.92451 1.42466 0.90706 1.17972 0.92438 0.92726 0.89621 1.20783 1.04370 0.93163 1.07185 1.20338 0.94657 0.97094 0.98776 1.17269 0.97008 0.85924 1.08519 1.42963 1.55165 1.12847 1.17793 1.21552 0.78292 0.87010 0.84362 1.90650 1.49948 1.83340 1.22016 1.22027 0.98742 0.90530 1.01098 1.22436 0.91228 0.98976 1.02676 1.22503 0.99343 0.97094 0.96292 1.22371 0.94063 1.01727 0.98060 1.22186 0.98475 0.98166 0.97270 1.20505 0.99651 0.91031 1.02073 1.20922 0.99714 0.97019 1.01429 0.89961 0.88856 0.88288 0.74667 0.85757 0.93099 0.88104 0.89123 0.90554 0.89823 0.93359 0.89662 0.92773 0.85815 0.87071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.55 10.94 21.82 0.24 -43.31 16 2 C 0.04 1.80 5.15 85.24 0.44 2.24 16 3 Si 0.99 38.54 29.59 68.60 2.03 40.57 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 6 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 7 C -0.50 -27.72 9.04 23.39 0.21 -27.51 16 8 H 0.07 4.02 7.90 -2.91 -0.02 4.00 16 9 C 0.07 4.23 5.57 -21.28 -0.12 4.11 16 10 C -0.23 -12.70 9.74 22.48 0.22 -12.48 16 11 C -0.09 -4.46 8.57 22.13 0.19 -4.27 16 12 C 0.01 0.29 6.27 38.57 0.24 0.53 16 13 N -0.64 -22.10 5.26 -303.11 -1.59 -23.69 16 14 C 0.50 17.25 6.72 87.66 0.59 17.83 16 15 O -0.58 -26.12 12.93 -3.03 -0.04 -26.16 16 16 C -0.10 -2.32 3.30 -10.81 -0.04 -2.35 16 17 C -0.12 -2.05 6.24 31.70 0.20 -1.85 16 18 C -0.11 -1.66 6.91 31.91 0.22 -1.44 16 19 C -0.12 -2.31 6.83 31.67 0.22 -2.10 16 20 C -0.12 -2.82 6.40 31.32 0.20 -2.62 16 21 C -0.11 -5.18 9.89 22.14 0.22 -4.96 16 22 C -0.17 -9.07 8.63 22.48 0.19 -8.88 16 23 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 24 H 0.09 4.87 8.06 -2.91 -0.02 4.84 16 25 H 0.10 4.94 6.47 -2.91 -0.02 4.92 16 26 H 0.42 10.58 8.73 -92.70 -0.81 9.77 16 27 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.05 1.13 7.85 -2.39 -0.02 1.12 16 29 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 35 H 0.05 1.67 6.39 -2.39 -0.02 1.66 16 36 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 37 H 0.11 6.04 6.17 -2.91 -0.02 6.03 16 Total: -1.00 -68.58 304.22 3.89 -64.69 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: 0.27 Total: 31.65 kcal Atomic # 6 Polarization: -46.73 SS G_CDS: 2.98 Total: -43.74 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: -1.35 Total: -67.01 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.04 Total: -26.16 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Total: -68.58 3.89 -64.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008125691.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.671 kcal (2) G-P(sol) polarization free energy of solvation -68.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds