Wall clock time and date at job start Mon Mar 30 2020 00:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.46782 * 126.90627 * 2 1 4 4 C 1.39406 * 134.37047 * 359.97438 * 3 2 1 5 5 C 1.36740 * 119.71523 * 180.02562 * 4 3 2 6 6 C 1.38747 * 120.41745 * 359.97438 * 5 4 3 7 7 C 1.37850 * 120.68271 * 359.97438 * 6 5 4 8 8 C 1.38937 * 119.82294 * 359.97438 * 7 6 5 9 9 O 1.34804 * 133.49965 * 179.68253 * 8 7 6 10 10 C 1.34000 * 126.90799 * 179.97438 * 2 1 3 11 11 C 1.50697 * 124.91926 * 0.02562 * 10 2 1 12 12 H 1.08999 * 109.47993 * 344.99972 * 11 10 2 13 13 C 1.53001 * 109.46922 * 105.00075 * 11 10 2 14 14 N 1.46903 * 109.47238 * 224.99524 * 11 10 2 15 15 C 1.46896 * 111.00141 * 155.00079 * 14 11 10 16 16 C 1.50707 * 109.47318 * 180.02562 * 15 14 11 17 17 H 1.07999 * 119.99316 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00078 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99836 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00007 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46901 * 59.99863 * 20 18 16 22 22 H 1.48495 * 109.47300 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46889 * 300.00078 * 20 18 16 24 24 H 1.08999 * 109.46809 * 89.98267 * 1 2 3 25 25 H 1.09001 * 109.47060 * 209.97869 * 1 2 3 26 26 H 1.08994 * 109.47058 * 329.97761 * 1 2 3 27 27 H 1.07991 * 120.14328 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.78971 * 179.97438 * 5 4 3 29 29 H 1.07993 * 119.65529 * 180.02562 * 6 5 4 30 30 H 1.08001 * 120.08317 * 180.02562 * 7 6 5 31 31 H 1.09000 * 109.47213 * 299.99766 * 13 11 10 32 32 H 1.09004 * 109.47090 * 59.99905 * 13 11 10 33 33 H 1.09007 * 109.47431 * 179.97438 * 13 11 10 34 34 H 1.00902 * 111.00024 * 278.96017 * 14 11 10 35 35 H 1.09000 * 109.47406 * 300.00964 * 15 14 11 36 36 H 1.09005 * 109.46905 * 60.00511 * 15 14 11 37 37 H 0.97001 * 119.99248 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3885 1.1737 0.0000 4 6 2.1770 2.5516 -0.0004 5 6 3.2481 3.4017 -0.0008 6 6 4.5421 2.9012 -0.0002 7 6 4.7706 1.5418 0.0013 8 6 3.6964 0.6606 0.0028 9 8 3.5991 -0.6839 -0.0010 10 6 2.3117 -1.0715 0.0005 11 6 1.8417 -2.5033 0.0006 12 1 0.7852 -2.5390 0.2662 13 6 2.0379 -3.1045 -1.3926 14 7 2.6192 -3.2738 0.9802 15 6 1.8646 -4.4441 1.4480 16 6 2.6920 -5.2078 2.4498 17 1 3.6795 -4.8584 2.7128 18 6 2.1883 -6.3525 3.0303 19 7 0.9860 -6.7782 2.7094 20 14 3.2136 -7.2987 4.2724 21 1 3.5280 -6.4193 5.4270 22 1 2.4513 -8.4825 4.7443 23 1 4.4768 -7.7466 3.6329 24 1 -0.3633 0.0003 -1.0277 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3633 0.8897 0.5142 27 1 1.1717 2.9460 -0.0013 28 1 3.0857 4.4694 -0.0016 29 1 5.3790 3.5838 -0.0001 30 1 5.7819 1.1628 0.0021 31 1 1.4611 -2.5328 -2.1196 32 1 3.0945 -3.0689 -1.6582 33 1 1.6984 -4.1403 -1.3925 34 1 3.5119 -3.5482 0.5982 35 1 0.9380 -4.1149 1.9182 36 1 1.6327 -5.0894 0.6006 37 1 0.6319 -7.5838 3.1176 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037240186.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:51 Heat of formation + Delta-G solvation = 16.482101 kcal Electronic energy + Delta-G solvation = -18659.383049 eV Core-core repulsion = 15788.473096 eV Total energy + Delta-G solvation = -2870.909954 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.26936 -37.89839 -36.33999 -33.83726 -32.69860 -30.50045 -30.24885 -28.98907 -26.86920 -26.05087 -23.65499 -22.65278 -21.78483 -20.55646 -19.81632 -16.94519 -16.80382 -16.28473 -15.94249 -15.37729 -14.79583 -14.17488 -14.10594 -13.81834 -13.69280 -13.37175 -13.03897 -12.59744 -12.42631 -12.24193 -12.10041 -11.97216 -11.81948 -11.40985 -11.35361 -10.91392 -10.83487 -10.73240 -10.62136 -9.96662 -9.67982 -9.27525 -8.53021 -8.49678 -7.83866 -7.42620 -6.06642 -4.08598 1.02913 1.44652 2.53969 2.96770 3.32915 3.36526 3.40196 3.78362 4.39072 4.49746 4.73133 4.93179 5.04269 5.14032 5.23916 5.29542 5.32592 5.40291 5.48563 5.55887 5.65754 5.72529 5.77670 5.97429 5.99439 6.09918 6.15082 6.29604 6.35577 6.42783 6.47852 6.65546 6.79466 7.12381 7.33384 7.45215 7.72558 8.05217 8.28202 8.50477 8.99580 9.56381 11.04347 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.029238 B = 0.004341 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.429683 B = 6449.277343 C = 6865.334014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.200 4.200 3 C -0.117 4.117 4 C -0.076 4.076 5 C -0.141 4.141 6 C -0.105 4.105 7 C -0.105 4.105 8 C 0.048 3.952 9 O -0.179 6.179 10 C 0.083 3.917 11 C 0.151 3.849 12 H 0.106 0.894 13 C -0.178 4.178 14 N -0.681 5.681 15 C 0.194 3.806 16 C -0.516 4.516 17 H 0.062 0.938 18 C 0.057 3.943 19 N -0.898 5.898 20 Si 0.900 3.100 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.337 0.663 35 H 0.030 0.970 36 H -0.008 1.008 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.855 16.999 -8.342 19.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.202 4.202 3 C -0.118 4.118 4 C -0.094 4.094 5 C -0.159 4.159 6 C -0.124 4.124 7 C -0.123 4.123 8 C 0.000 4.000 9 O -0.079 6.079 10 C 0.034 3.966 11 C 0.040 3.960 12 H 0.124 0.876 13 C -0.237 4.237 14 N -0.311 5.311 15 C 0.068 3.932 16 C -0.554 4.554 17 H 0.081 0.919 18 C -0.144 4.144 19 N -0.537 5.537 20 Si 0.728 3.272 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.154 0.846 35 H 0.048 0.952 36 H 0.010 0.990 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.757 17.038 -7.749 18.800 hybrid contribution 0.486 -1.035 -0.015 1.144 sum 2.243 16.002 -7.764 17.927 Atomic orbital electron populations 1.20111 0.88757 1.02734 1.01696 1.20730 0.96470 0.90185 1.12836 1.19829 0.92691 0.94142 1.05113 1.20218 0.99278 0.90705 0.99218 1.20689 0.92392 0.99573 1.03292 1.20827 0.97267 0.93653 1.00607 1.19927 0.96636 0.91291 1.04462 1.19667 0.95462 0.81891 1.02950 1.84013 1.28251 1.20213 1.75468 1.22548 0.79767 0.96432 0.97858 1.20262 0.98704 0.84813 0.92199 0.87594 1.22507 1.02306 1.01964 0.96935 1.60730 1.06369 1.27488 1.36533 1.19630 0.94071 0.85042 0.94432 1.21119 1.02373 1.08115 1.23843 0.91947 1.24967 0.95148 0.97285 0.97021 1.69947 1.16250 1.23847 1.43673 0.86524 0.80030 0.79107 0.81542 1.20127 1.21303 1.20228 0.91760 0.91081 0.91800 0.85964 0.85796 0.85211 0.85286 0.92435 0.92256 0.90966 0.84579 0.95222 0.99020 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.13 36.01 0.36 -0.61 16 2 C -0.20 -3.18 6.35 -102.66 -0.65 -3.83 16 3 C -0.12 -1.81 6.38 -105.16 -0.67 -2.48 16 4 C -0.08 -0.95 10.05 -39.69 -0.40 -1.35 16 5 C -0.14 -1.52 9.98 -39.94 -0.40 -1.92 16 6 C -0.11 -1.14 10.01 -39.54 -0.40 -1.54 16 7 C -0.10 -1.37 10.07 -39.46 -0.40 -1.77 16 8 C 0.05 0.78 7.42 -38.47 -0.29 0.49 16 9 O -0.18 -3.25 10.58 3.94 0.04 -3.21 16 10 C 0.08 1.45 6.07 -35.80 -0.22 1.24 16 11 C 0.15 2.71 2.95 -68.86 -0.20 2.50 16 12 H 0.11 1.87 6.37 -51.93 -0.33 1.54 16 13 C -0.18 -2.76 9.14 37.16 0.34 -2.42 16 14 N -0.68 -14.74 6.22 -109.22 -0.68 -15.42 16 15 C 0.19 4.98 5.24 -4.97 -0.03 4.95 16 16 C -0.52 -14.56 9.32 -34.44 -0.32 -14.88 16 17 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 20 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.92 6.95 -51.93 -0.36 0.56 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 28 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 29 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 30 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 33 H 0.07 1.17 7.45 -51.93 -0.39 0.78 16 34 H 0.34 7.10 8.46 -39.29 -0.33 6.77 16 35 H 0.03 0.81 8.06 -51.93 -0.42 0.40 16 36 H -0.01 -0.21 7.44 -51.93 -0.39 -0.60 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 315.16 15.07 4.75 4.75 Total: -1.00 -30.95 315.16 -8.67 -39.63 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.14 Total: 3.40 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -3.36 Total: -20.08 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.06 Total: -41.15 kcal Atomic # 8 Polarization: -3.25 SS G_CDS: 0.04 Total: -3.21 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.95 -8.67 -39.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037240186.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.112 kcal (2) G-P(sol) polarization free energy of solvation -30.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds