Wall clock time and date at job start Mon Mar 30 2020 00:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.46782 * 126.90627 * 2 1 4 4 C 1.39406 * 134.37047 * 359.97438 * 3 2 1 5 5 C 1.36740 * 119.71523 * 180.02562 * 4 3 2 6 6 C 1.38747 * 120.41745 * 359.97438 * 5 4 3 7 7 C 1.37850 * 120.68271 * 359.97438 * 6 5 4 8 8 C 1.38937 * 119.82294 * 359.97438 * 7 6 5 9 9 O 1.34804 * 133.49965 * 179.68253 * 8 7 6 10 10 C 1.34000 * 126.90799 * 179.97438 * 2 1 3 11 11 C 1.50697 * 124.91926 * 0.02562 * 10 2 1 12 12 H 1.08999 * 109.47993 * 344.99972 * 11 10 2 13 13 C 1.53001 * 109.46922 * 105.00075 * 11 10 2 14 14 N 1.46903 * 109.47238 * 224.99524 * 11 10 2 15 15 C 1.46896 * 111.00141 * 155.00079 * 14 11 10 16 16 C 1.50707 * 109.47318 * 180.02562 * 15 14 11 17 17 H 1.07999 * 119.99316 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00078 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99836 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00007 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46901 * 59.99863 * 20 18 16 22 22 H 1.48495 * 109.47300 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46889 * 300.00078 * 20 18 16 24 24 H 1.08999 * 109.46809 * 89.98267 * 1 2 3 25 25 H 1.09001 * 109.47060 * 209.97869 * 1 2 3 26 26 H 1.08994 * 109.47058 * 329.97761 * 1 2 3 27 27 H 1.07991 * 120.14328 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.78971 * 179.97438 * 5 4 3 29 29 H 1.07993 * 119.65529 * 180.02562 * 6 5 4 30 30 H 1.08001 * 120.08317 * 180.02562 * 7 6 5 31 31 H 1.09000 * 109.47213 * 299.99766 * 13 11 10 32 32 H 1.09004 * 109.47090 * 59.99905 * 13 11 10 33 33 H 1.09007 * 109.47431 * 179.97438 * 13 11 10 34 34 H 1.00902 * 111.00024 * 278.96017 * 14 11 10 35 35 H 1.09000 * 109.47406 * 300.00964 * 15 14 11 36 36 H 1.09005 * 109.46905 * 60.00511 * 15 14 11 37 37 H 0.97001 * 119.99248 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3885 1.1737 0.0000 4 6 2.1770 2.5516 -0.0004 5 6 3.2481 3.4017 -0.0008 6 6 4.5421 2.9012 -0.0002 7 6 4.7706 1.5418 0.0013 8 6 3.6964 0.6606 0.0028 9 8 3.5991 -0.6839 -0.0010 10 6 2.3117 -1.0715 0.0005 11 6 1.8417 -2.5033 0.0006 12 1 0.7852 -2.5390 0.2662 13 6 2.0379 -3.1045 -1.3926 14 7 2.6192 -3.2738 0.9802 15 6 1.8646 -4.4441 1.4480 16 6 2.6920 -5.2078 2.4498 17 1 3.6795 -4.8584 2.7128 18 6 2.1883 -6.3525 3.0303 19 7 0.9860 -6.7782 2.7094 20 14 3.2136 -7.2987 4.2724 21 1 3.5280 -6.4193 5.4270 22 1 2.4513 -8.4825 4.7443 23 1 4.4768 -7.7466 3.6329 24 1 -0.3633 0.0003 -1.0277 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3633 0.8897 0.5142 27 1 1.1717 2.9460 -0.0013 28 1 3.0857 4.4694 -0.0016 29 1 5.3790 3.5838 -0.0001 30 1 5.7819 1.1628 0.0021 31 1 1.4611 -2.5328 -2.1196 32 1 3.0945 -3.0689 -1.6582 33 1 1.6984 -4.1403 -1.3925 34 1 3.5119 -3.5482 0.5982 35 1 0.9380 -4.1149 1.9182 36 1 1.6327 -5.0894 0.6006 37 1 0.6319 -7.5838 3.1176 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037240186.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:51 Heat of formation + Delta-G solvation = -2.175414 kcal Electronic energy + Delta-G solvation = -18660.192100 eV Core-core repulsion = 15788.473096 eV Total energy + Delta-G solvation = -2871.719004 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.41940 -38.94519 -37.87959 -35.26842 -34.52804 -31.83730 -31.44026 -30.16256 -28.03667 -27.95030 -24.98044 -23.73364 -23.61282 -21.82222 -20.96018 -18.77260 -17.89495 -17.57069 -17.19444 -16.94855 -16.36205 -15.73616 -15.52649 -15.14399 -14.84311 -14.48844 -14.26910 -14.03004 -13.76355 -13.56204 -13.46463 -13.18890 -13.14307 -12.93921 -12.71935 -12.60145 -12.45751 -12.24808 -11.98505 -11.72930 -11.36751 -10.73963 -10.66913 -9.53177 -9.24180 -8.92857 -8.23923 -6.34717 0.00463 0.44904 1.36263 1.40531 1.43480 1.51677 1.82857 2.39028 2.81291 3.09418 3.24796 3.63933 3.73684 3.91519 4.02653 4.11509 4.17229 4.23865 4.43782 4.53428 4.59333 4.69056 4.73963 4.80638 4.83847 4.98500 5.01593 5.11129 5.11646 5.25870 5.34316 5.42153 5.54394 5.56297 5.60875 5.84093 5.98118 6.28332 6.38643 6.60801 6.83192 7.35564 8.87019 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.029238 B = 0.004341 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.429683 B = 6449.277343 C = 6865.334014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.194 4.194 3 C -0.144 4.144 4 C -0.082 4.082 5 C -0.135 4.135 6 C -0.091 4.091 7 C -0.123 4.123 8 C 0.015 3.985 9 O -0.204 6.204 10 C 0.046 3.954 11 C 0.154 3.846 12 H 0.102 0.898 13 C -0.168 4.168 14 N -0.686 5.686 15 C 0.211 3.789 16 C -0.540 4.540 17 H 0.059 0.941 18 C 0.007 3.993 19 N -0.930 5.930 20 Si 0.970 3.030 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.267 1.267 24 H 0.084 0.916 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.145 0.855 28 H 0.163 0.837 29 H 0.168 0.832 30 H 0.140 0.860 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.337 0.663 35 H 0.004 0.996 36 H -0.024 1.024 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.518 19.345 -8.378 21.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.196 4.196 3 C -0.144 4.144 4 C -0.100 4.100 5 C -0.152 4.152 6 C -0.109 4.109 7 C -0.142 4.142 8 C -0.032 4.032 9 O -0.106 6.106 10 C -0.002 4.002 11 C 0.044 3.956 12 H 0.120 0.880 13 C -0.227 4.227 14 N -0.317 5.317 15 C 0.084 3.916 16 C -0.578 4.578 17 H 0.077 0.923 18 C -0.192 4.192 19 N -0.570 5.570 20 Si 0.795 3.205 21 H -0.197 1.197 22 H -0.205 1.205 23 H -0.192 1.192 24 H 0.102 0.898 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.163 0.837 28 H 0.180 0.820 29 H 0.186 0.814 30 H 0.158 0.842 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.155 0.845 35 H 0.022 0.978 36 H -0.007 1.007 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.421 19.406 -7.803 21.055 hybrid contribution 0.300 -1.549 -0.044 1.579 sum 2.721 17.856 -7.847 19.693 Atomic orbital electron populations 1.20217 0.86881 1.03142 1.03082 1.21179 0.97795 0.90129 1.10464 1.20111 0.92189 0.95369 1.06776 1.20605 1.01235 0.89555 0.98590 1.21202 0.91705 1.01321 1.00994 1.21362 0.98816 0.93019 0.97666 1.20331 0.96607 0.92111 1.05132 1.20269 0.97116 0.81380 1.04409 1.83926 1.28563 1.21690 1.76457 1.22338 0.80291 0.96229 1.01349 1.20225 0.97929 0.85091 0.92389 0.87997 1.22385 1.02724 1.01362 0.96185 1.60577 1.06462 1.25826 1.38797 1.19246 0.93128 0.85851 0.93337 1.21474 1.02612 1.08971 1.24772 0.92281 1.25869 0.96313 0.98155 0.98878 1.70062 1.17781 1.24368 1.44751 0.85425 0.78585 0.77684 0.78847 1.19658 1.20460 1.19188 0.89779 0.91912 0.90089 0.83735 0.81960 0.81411 0.84174 0.90031 0.92193 0.92078 0.84495 0.97758 1.00651 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.89 10.13 71.24 0.72 -1.17 16 2 C -0.19 -6.17 6.35 -18.59 -0.12 -6.29 16 3 C -0.14 -4.34 6.38 -20.21 -0.13 -4.46 16 4 C -0.08 -1.84 10.05 22.20 0.22 -1.61 16 5 C -0.13 -2.35 9.98 22.04 0.22 -2.13 16 6 C -0.09 -1.65 10.01 22.30 0.22 -1.42 16 7 C -0.12 -3.08 10.07 22.35 0.23 -2.85 16 8 C 0.02 0.50 7.42 22.99 0.17 0.67 16 9 O -0.20 -7.73 10.58 -8.82 -0.09 -7.82 16 10 C 0.05 1.67 6.07 24.72 0.15 1.82 16 11 C 0.15 5.76 2.95 44.17 0.13 5.89 16 12 H 0.10 3.80 6.37 -2.39 -0.02 3.79 16 13 C -0.17 -5.37 9.14 71.98 0.66 -4.71 16 14 N -0.69 -31.20 6.22 -499.45 -3.11 -34.30 16 15 C 0.21 11.37 5.24 85.56 0.45 11.81 16 16 C -0.54 -31.33 9.32 25.60 0.24 -31.09 16 17 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 18 C 0.01 0.38 5.46 84.65 0.46 0.84 16 19 N -0.93 -55.83 13.29 21.45 0.28 -55.55 16 20 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 24 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.06 1.64 6.95 -2.39 -0.02 1.63 16 26 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.14 2.49 8.06 -2.91 -0.02 2.46 16 28 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 29 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 30 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 31 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.06 1.88 8.13 -2.38 -0.02 1.86 16 33 H 0.06 2.06 7.45 -2.38 -0.02 2.04 16 34 H 0.34 14.98 8.46 -89.69 -0.76 14.22 16 35 H 0.00 0.25 8.06 -2.39 -0.02 0.23 16 36 H -0.02 -1.35 7.44 -2.38 -0.02 -1.37 16 37 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -68.76 315.16 3.05 -65.71 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.31 Total: 19.90 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 3.62 Total: -34.71 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -2.82 Total: -89.85 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.09 Total: -7.82 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -68.76 3.05 -65.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037240186.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.539 kcal (2) G-P(sol) polarization free energy of solvation -68.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds