Wall clock time and date at job start Sun Mar 29 2020 23:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86806 * 119.99926 * 2 1 4 4 H 1.48503 * 109.47124 * 270.00393 * 3 2 1 5 5 H 1.48497 * 109.46790 * 30.00116 * 3 2 1 6 6 H 1.48497 * 109.47046 * 150.00483 * 3 2 1 7 7 C 1.40047 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00289 * 179.97438 * 7 2 1 9 9 C 1.46374 * 119.99931 * 359.97438 * 7 2 1 10 10 O 1.21692 * 120.00138 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00442 * 180.02562 * 9 7 2 12 12 C 1.46497 * 120.00215 * 174.76873 * 11 9 7 13 13 C 1.50694 * 110.43582 * 61.09929 * 12 11 9 14 14 C 1.38238 * 120.00195 * 200.09980 * 13 12 11 15 15 C 1.38237 * 119.99583 * 179.78895 * 14 13 12 16 16 C 1.38233 * 120.00318 * 0.46281 * 15 14 13 17 17 C 1.38233 * 119.99992 * 359.77362 * 16 15 14 18 18 C 1.38237 * 119.99800 * 20.38061 * 13 12 11 19 19 C 1.54893 * 110.48732 * 298.41443 * 12 11 9 20 20 C 1.54884 * 102.74921 * 279.26412 * 19 12 11 21 21 C 1.54262 * 104.19790 * 322.05911 * 20 19 12 22 22 C 1.53867 * 106.59986 * 23.60811 * 21 20 19 23 23 H 0.97005 * 119.99974 * 359.97438 * 1 2 3 24 24 H 0.97009 * 119.99653 * 355.04571 * 11 9 7 25 25 H 1.07995 * 120.00037 * 0.02562 * 14 13 12 26 26 H 1.08002 * 119.99211 * 180.25587 * 15 14 13 27 27 H 1.07998 * 119.99892 * 179.78638 * 16 15 14 28 28 H 1.07997 * 120.00166 * 179.97438 * 17 16 15 29 29 H 1.08002 * 119.99932 * 359.97432 * 18 13 12 30 30 H 1.08995 * 110.75162 * 37.57954 * 19 12 11 31 31 H 1.09002 * 110.75654 * 160.94852 * 19 12 11 32 32 H 1.09000 * 110.48588 * 203.37547 * 20 19 12 33 33 H 1.09007 * 110.48878 * 80.73557 * 20 19 12 34 34 H 1.09007 * 110.03163 * 264.32683 * 21 20 19 35 35 H 1.09003 * 110.03272 * 142.89871 * 21 20 19 36 36 H 1.09004 * 110.03643 * 240.72037 * 22 21 20 37 37 H 1.09005 * 110.03523 * 119.28814 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4881 2.0465 -1.4001 5 1 1.4381 2.6526 0.7001 6 1 3.5383 1.4402 0.6999 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4806 0.0004 11 7 1.9490 -3.6477 -0.0005 12 6 1.2211 -4.9137 0.1151 13 6 0.2723 -5.0829 -1.0433 14 6 -0.7909 -5.9608 -0.9435 15 6 -1.6637 -6.1126 -2.0046 16 6 -1.4680 -5.3937 -3.1690 17 6 -0.4020 -4.5195 -3.2706 18 6 0.4684 -4.3644 -2.2079 19 6 0.4559 -4.9781 1.4603 20 6 1.5604 -5.3965 2.4622 21 6 2.4222 -6.4056 1.6757 22 6 2.2065 -6.0987 0.1835 23 1 -0.4850 0.8401 0.0004 24 1 2.9164 -3.6492 -0.0731 25 1 -0.9417 -6.5251 -0.0352 26 1 -2.4967 -6.7954 -1.9251 27 1 -2.1479 -5.5150 -3.9992 28 1 -0.2488 -3.9582 -4.1804 29 1 1.3014 -3.6816 -2.2874 30 1 0.0485 -4.0011 1.7200 31 1 -0.3336 -5.7287 1.4200 32 1 1.1202 -5.8722 3.3386 33 1 2.1568 -4.5324 2.7553 34 1 2.1014 -7.4234 1.8978 35 1 3.4736 -6.2802 1.9346 36 1 1.7810 -6.9676 -0.3187 37 1 3.1533 -5.8244 -0.2820 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041569347.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:44:13 Heat of formation + Delta-G solvation = -19.252952 kcal Electronic energy + Delta-G solvation = -19851.383522 eV Core-core repulsion = 16978.923980 eV Total energy + Delta-G solvation = -2872.459542 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.73660 -37.41315 -36.06520 -32.67262 -31.91924 -30.59956 -30.05914 -28.30970 -26.95626 -25.58708 -22.21058 -21.64664 -20.52589 -19.92095 -18.42100 -17.05878 -16.62527 -15.33346 -15.26261 -14.86214 -14.48640 -13.99752 -13.87507 -13.40712 -12.91228 -12.89048 -12.36330 -12.23346 -11.93618 -11.50029 -11.28613 -11.00980 -10.92825 -10.85107 -10.74816 -10.54529 -10.41375 -10.33322 -10.21483 -10.14497 -9.97904 -8.82968 -8.25767 -8.05694 -7.48293 -7.39167 -6.13790 -4.60325 2.00394 2.07604 3.14498 3.21872 3.24627 4.11932 4.39610 4.61832 4.79035 5.02382 5.09961 5.21886 5.45119 5.52197 5.56780 5.69102 5.83725 5.84767 5.96537 5.98635 6.07634 6.14548 6.19077 6.25051 6.34091 6.42636 6.45668 6.64427 6.70023 6.76909 7.01727 7.05463 7.14959 7.33765 7.45983 7.65473 7.96308 8.18841 8.37198 9.06242 9.59600 10.64380 10.85464 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.018549 B = 0.007999 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.141420 B = 3499.399503 C = 4484.143071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.090 3.910 3 Si 0.902 3.098 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.064 0.936 9 C 0.557 3.443 10 O -0.563 6.563 11 N -0.755 5.755 12 C 0.222 3.778 13 C -0.049 4.049 14 C -0.122 4.122 15 C -0.130 4.130 16 C -0.135 4.135 17 C -0.124 4.124 18 C -0.079 4.079 19 C -0.126 4.126 20 C -0.121 4.121 21 C -0.120 4.120 22 C -0.120 4.120 23 H 0.267 0.733 24 H 0.379 0.621 25 H 0.115 0.885 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.786 -11.150 -0.919 11.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.130 4.130 3 Si 0.727 3.273 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.083 0.917 9 C 0.360 3.640 10 O -0.444 6.444 11 N -0.410 5.410 12 C 0.133 3.867 13 C -0.051 4.051 14 C -0.140 4.140 15 C -0.148 4.148 16 C -0.153 4.153 17 C -0.142 4.142 18 C -0.098 4.098 19 C -0.164 4.164 20 C -0.159 4.159 21 C -0.158 4.158 22 C -0.158 4.158 23 H 0.077 0.923 24 H 0.211 0.789 25 H 0.133 0.867 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.139 0.861 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.710 -11.027 -0.894 11.195 hybrid contribution 0.848 1.001 -0.065 1.313 sum 2.558 -10.026 -0.958 10.392 Atomic orbital electron populations 1.70018 1.06888 1.27043 1.35500 1.25653 0.94552 1.00050 0.92751 0.86460 0.80218 0.81834 0.78749 1.19864 1.20558 1.19017 1.20891 0.93465 0.89576 1.54588 0.91749 1.18110 0.87365 0.82138 0.76374 1.90633 1.13681 1.86529 1.53584 1.46292 1.08546 1.04317 1.81825 1.19474 0.90267 0.85341 0.91583 1.20020 0.95602 0.94714 0.94753 1.20904 0.95276 0.99606 0.98249 1.20916 0.99287 1.00594 0.94008 1.20938 0.98292 0.98252 0.97816 1.21053 0.95688 0.98613 0.98863 1.21001 0.99318 0.97092 0.92349 1.22926 0.96769 1.02825 0.93888 1.22324 0.97457 0.98527 0.97587 1.22107 0.99803 0.98949 0.94903 1.22432 0.99078 0.97606 0.96689 0.92266 0.78888 0.86681 0.87062 0.87173 0.87000 0.86051 0.89370 0.91833 0.92460 0.91453 0.92307 0.92195 0.91234 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.70 11.83 55.55 0.66 -22.05 16 2 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 3 Si 0.90 20.13 29.56 -169.99 -5.02 15.10 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 7 C -0.55 -15.11 9.54 -35.63 -0.34 -15.45 16 8 H 0.06 1.64 7.85 -52.48 -0.41 1.23 16 9 C 0.56 14.98 5.95 -12.99 -0.08 14.90 16 10 O -0.56 -17.14 12.29 5.20 0.06 -17.08 16 11 N -0.75 -16.13 4.24 -48.53 -0.21 -16.34 16 12 C 0.22 4.15 0.63 -131.31 -0.08 4.07 16 13 C -0.05 -0.98 3.78 -104.63 -0.40 -1.38 16 14 C -0.12 -2.17 9.02 -39.58 -0.36 -2.53 16 15 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 16 C -0.13 -2.27 10.05 -39.58 -0.40 -2.67 16 17 C -0.12 -2.32 10.05 -39.58 -0.40 -2.71 16 18 C -0.08 -1.65 8.27 -39.58 -0.33 -1.98 16 19 C -0.13 -2.36 5.54 -24.74 -0.14 -2.50 16 20 C -0.12 -1.88 6.79 -25.08 -0.17 -2.05 16 21 C -0.12 -1.58 6.80 -25.62 -0.17 -1.76 16 22 C -0.12 -1.76 6.02 -25.61 -0.15 -1.92 16 23 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 24 H 0.38 7.27 8.25 -40.82 -0.34 6.93 16 25 H 0.12 1.81 6.28 -52.49 -0.33 1.48 16 26 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 27 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 29 H 0.12 2.69 6.73 -52.49 -0.35 2.34 16 30 H 0.09 2.07 6.49 -51.93 -0.34 1.73 16 31 H 0.06 1.09 5.90 -51.93 -0.31 0.78 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.96 7.75 -51.93 -0.40 0.56 16 37 H 0.07 0.93 7.74 -51.93 -0.40 0.53 16 LS Contribution 299.27 15.07 4.51 4.51 Total: -1.00 -32.44 299.27 -8.48 -40.92 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -4.97 Total: 11.07 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -3.50 Total: -16.13 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.45 Total: -38.38 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: 0.06 Total: -17.08 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.44 -8.48 -40.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041569347.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.663 kcal (2) G-P(sol) polarization free energy of solvation -32.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds