Wall clock time and date at job start Sun Mar 29 2020 23:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86806 * 119.99926 * 2 1 4 4 H 1.48503 * 109.47124 * 270.00393 * 3 2 1 5 5 H 1.48497 * 109.46790 * 30.00116 * 3 2 1 6 6 H 1.48497 * 109.47046 * 150.00483 * 3 2 1 7 7 C 1.40047 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00289 * 179.97438 * 7 2 1 9 9 C 1.46374 * 119.99931 * 359.97438 * 7 2 1 10 10 O 1.21692 * 120.00138 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00442 * 180.02562 * 9 7 2 12 12 C 1.46497 * 120.00215 * 174.76873 * 11 9 7 13 13 C 1.50694 * 110.43582 * 61.09929 * 12 11 9 14 14 C 1.38238 * 120.00195 * 200.09980 * 13 12 11 15 15 C 1.38237 * 119.99583 * 179.78895 * 14 13 12 16 16 C 1.38233 * 120.00318 * 0.46281 * 15 14 13 17 17 C 1.38233 * 119.99992 * 359.77362 * 16 15 14 18 18 C 1.38237 * 119.99800 * 20.38061 * 13 12 11 19 19 C 1.54893 * 110.48732 * 298.41443 * 12 11 9 20 20 C 1.54884 * 102.74921 * 279.26412 * 19 12 11 21 21 C 1.54262 * 104.19790 * 322.05911 * 20 19 12 22 22 C 1.53867 * 106.59986 * 23.60811 * 21 20 19 23 23 H 0.97005 * 119.99974 * 359.97438 * 1 2 3 24 24 H 0.97009 * 119.99653 * 355.04571 * 11 9 7 25 25 H 1.07995 * 120.00037 * 0.02562 * 14 13 12 26 26 H 1.08002 * 119.99211 * 180.25587 * 15 14 13 27 27 H 1.07998 * 119.99892 * 179.78638 * 16 15 14 28 28 H 1.07997 * 120.00166 * 179.97438 * 17 16 15 29 29 H 1.08002 * 119.99932 * 359.97432 * 18 13 12 30 30 H 1.08995 * 110.75162 * 37.57954 * 19 12 11 31 31 H 1.09002 * 110.75654 * 160.94852 * 19 12 11 32 32 H 1.09000 * 110.48588 * 203.37547 * 20 19 12 33 33 H 1.09007 * 110.48878 * 80.73557 * 20 19 12 34 34 H 1.09007 * 110.03163 * 264.32683 * 21 20 19 35 35 H 1.09003 * 110.03272 * 142.89871 * 21 20 19 36 36 H 1.09004 * 110.03643 * 240.72037 * 22 21 20 37 37 H 1.09005 * 110.03523 * 119.28814 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4881 2.0465 -1.4001 5 1 1.4381 2.6526 0.7001 6 1 3.5383 1.4402 0.6999 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4806 0.0004 11 7 1.9490 -3.6477 -0.0005 12 6 1.2211 -4.9137 0.1151 13 6 0.2723 -5.0829 -1.0433 14 6 -0.7909 -5.9608 -0.9435 15 6 -1.6637 -6.1126 -2.0046 16 6 -1.4680 -5.3937 -3.1690 17 6 -0.4020 -4.5195 -3.2706 18 6 0.4684 -4.3644 -2.2079 19 6 0.4559 -4.9781 1.4603 20 6 1.5604 -5.3965 2.4622 21 6 2.4222 -6.4056 1.6757 22 6 2.2065 -6.0987 0.1835 23 1 -0.4850 0.8401 0.0004 24 1 2.9164 -3.6492 -0.0731 25 1 -0.9417 -6.5251 -0.0352 26 1 -2.4967 -6.7954 -1.9251 27 1 -2.1479 -5.5150 -3.9992 28 1 -0.2488 -3.9582 -4.1804 29 1 1.3014 -3.6816 -2.2874 30 1 0.0485 -4.0011 1.7200 31 1 -0.3336 -5.7287 1.4200 32 1 1.1202 -5.8722 3.3386 33 1 2.1568 -4.5324 2.7553 34 1 2.1014 -7.4234 1.8978 35 1 3.4736 -6.2802 1.9346 36 1 1.7810 -6.9676 -0.3187 37 1 3.1533 -5.8244 -0.2820 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041569347.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:44:12 Heat of formation + Delta-G solvation = -39.475927 kcal Electronic energy + Delta-G solvation = -19852.260456 eV Core-core repulsion = 16978.923980 eV Total energy + Delta-G solvation = -2873.336476 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.23588 -38.94738 -37.82977 -34.66118 -33.71432 -32.08071 -31.53594 -29.60658 -28.70757 -27.32293 -23.65308 -23.04487 -22.29819 -21.22762 -20.02625 -18.99424 -18.06689 -17.32438 -16.76037 -16.24381 -15.87040 -15.75356 -15.30343 -14.89269 -14.57469 -14.34015 -14.06770 -13.77479 -13.51645 -13.17867 -12.88676 -12.71247 -12.56658 -12.31071 -12.16932 -12.06311 -12.01399 -11.84851 -11.68385 -11.63751 -11.23014 -10.89412 -9.73889 -9.67826 -9.38584 -9.22093 -8.21609 -6.78202 0.59671 0.65151 1.37623 1.38773 1.52846 2.24434 2.56050 2.97873 3.17040 3.61955 3.78586 3.90095 3.95038 4.14897 4.22076 4.31766 4.32949 4.57946 4.64059 4.69997 4.73940 4.83673 4.92632 5.00308 5.10643 5.13844 5.17885 5.25857 5.34609 5.35579 5.42524 5.55561 5.66846 5.71008 5.86068 5.95304 6.25451 6.31439 6.50427 6.93285 7.68033 8.59470 8.80413 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.018549 B = 0.007999 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.141420 B = 3499.399503 C = 4484.143071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.033 3.967 3 Si 0.987 3.013 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.252 1.252 7 C -0.579 4.579 8 H 0.078 0.922 9 C 0.552 3.448 10 O -0.605 6.605 11 N -0.743 5.743 12 C 0.211 3.789 13 C -0.068 4.068 14 C -0.132 4.132 15 C -0.126 4.126 16 C -0.136 4.136 17 C -0.140 4.140 18 C -0.114 4.114 19 C -0.126 4.126 20 C -0.117 4.117 21 C -0.110 4.110 22 C -0.112 4.112 23 H 0.270 0.730 24 H 0.389 0.611 25 H 0.136 0.864 26 H 0.149 0.851 27 H 0.144 0.856 28 H 0.122 0.878 29 H 0.092 0.908 30 H 0.031 0.969 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.528 -12.823 -0.807 13.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.181 4.181 3 Si 0.807 3.193 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.175 1.175 7 C -0.616 4.616 8 H 0.096 0.904 9 C 0.354 3.646 10 O -0.489 6.489 11 N -0.397 5.397 12 C 0.124 3.876 13 C -0.070 4.070 14 C -0.150 4.150 15 C -0.144 4.144 16 C -0.154 4.154 17 C -0.158 4.158 18 C -0.132 4.132 19 C -0.164 4.164 20 C -0.154 4.154 21 C -0.147 4.147 22 C -0.150 4.150 23 H 0.080 0.920 24 H 0.222 0.778 25 H 0.154 0.846 26 H 0.167 0.833 27 H 0.161 0.839 28 H 0.140 0.860 29 H 0.110 0.890 30 H 0.050 0.950 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.497 -12.745 -0.781 13.010 hybrid contribution 0.560 1.445 -0.126 1.555 sum 3.057 -11.300 -0.907 11.741 Atomic orbital electron populations 1.70190 1.09170 1.28371 1.37146 1.26793 0.95412 1.04424 0.91521 0.85178 0.78898 0.76002 0.79197 1.18922 1.20000 1.17498 1.21435 0.94383 0.90725 1.55091 0.90388 1.18241 0.86935 0.83634 0.75758 1.90586 1.15474 1.87569 1.55308 1.45946 1.08963 1.04399 1.80389 1.19803 0.91217 0.85258 0.91348 1.20231 0.96782 0.95405 0.94557 1.21207 0.94765 0.99427 0.99612 1.21399 0.99561 1.00307 0.93132 1.21336 0.97791 0.97135 0.99141 1.21305 0.96199 0.99488 0.98796 1.20954 0.99885 0.98157 0.94216 1.22858 0.98257 1.00240 0.95075 1.22288 0.96522 0.98701 0.97908 1.22084 1.00292 0.99459 0.92859 1.22413 0.98231 0.96031 0.98339 0.92017 0.77768 0.84640 0.83321 0.83858 0.86046 0.88980 0.95047 0.90166 0.90254 0.93546 0.89486 0.90569 0.89694 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.62 11.83 21.83 0.26 -50.36 16 2 C 0.03 1.89 5.50 85.30 0.47 2.36 16 3 Si 0.99 42.02 29.56 68.60 2.03 44.04 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 6 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 7 C -0.58 -33.02 9.54 24.83 0.24 -32.78 16 8 H 0.08 4.06 7.85 -2.91 -0.02 4.03 16 9 C 0.55 31.15 5.95 86.36 0.51 31.67 16 10 O -0.60 -38.97 12.29 -4.32 -0.05 -39.02 16 11 N -0.74 -32.90 4.24 -425.66 -1.81 -34.71 16 12 C 0.21 7.96 0.63 3.93 0.00 7.97 16 13 C -0.07 -2.74 3.78 -19.87 -0.08 -2.82 16 14 C -0.13 -4.53 9.02 22.27 0.20 -4.33 16 15 C -0.13 -3.87 10.05 22.27 0.22 -3.65 16 16 C -0.14 -4.36 10.05 22.27 0.22 -4.13 16 17 C -0.14 -5.29 10.05 22.27 0.22 -5.07 16 18 C -0.11 -4.93 8.27 22.27 0.18 -4.74 16 19 C -0.13 -4.77 5.54 31.88 0.18 -4.60 16 20 C -0.12 -3.46 6.79 31.67 0.21 -3.25 16 21 C -0.11 -2.53 6.80 31.31 0.21 -2.32 16 22 C -0.11 -3.07 6.02 31.32 0.19 -2.88 16 23 H 0.27 15.30 8.29 -92.70 -0.77 14.53 16 24 H 0.39 15.30 8.25 -92.70 -0.77 14.53 16 25 H 0.14 3.96 6.28 -2.91 -0.02 3.95 16 26 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 27 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 28 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 29 H 0.09 4.39 6.73 -2.91 -0.02 4.37 16 30 H 0.03 1.54 6.49 -2.39 -0.02 1.52 16 31 H 0.08 2.69 5.90 -2.39 -0.01 2.68 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 2.09 7.75 -2.38 -0.02 2.07 16 37 H 0.07 1.93 7.74 -2.38 -0.02 1.91 16 Total: -1.00 -75.15 299.27 3.74 -71.42 By element: Atomic # 1 Polarization: 36.89 SS G_CDS: 0.31 Total: 37.20 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: 3.00 Total: -28.57 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -1.55 Total: -85.07 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -0.05 Total: -39.02 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -75.15 3.74 -71.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041569347.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.939 kcal (2) G-P(sol) polarization free energy of solvation -75.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds