Wall clock time and date at job start Sun Mar 29 2020 23:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86800 * 120.00059 * 2 1 4 4 H 1.48508 * 109.47190 * 269.99710 * 3 2 1 5 5 H 1.48504 * 109.47322 * 29.99568 * 3 2 1 6 6 H 1.48494 * 109.47489 * 149.99836 * 3 2 1 7 7 C 1.39938 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00171 * 162.60863 * 7 2 1 9 9 C 1.41430 * 120.00399 * 342.60919 * 7 2 1 10 10 C 1.40786 * 120.18192 * 154.90792 * 9 7 2 11 11 C 1.37707 * 120.04163 * 180.02562 * 10 9 7 12 12 C 1.38370 * 120.41169 * 359.78418 * 11 10 9 13 13 C 1.39883 * 120.36133 * 0.47151 * 12 11 10 14 14 C 1.47877 * 120.02936 * 179.78467 * 13 12 11 15 15 O 1.21551 * 120.00142 * 179.72595 * 14 13 12 16 16 N 1.34775 * 120.00013 * 359.72496 * 14 13 12 17 17 C 1.46504 * 120.00220 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47248 * 180.02562 * 17 16 14 19 19 C 1.53781 * 113.61317 * 274.13983 * 18 17 16 20 20 C 1.53961 * 87.01578 * 220.04812 * 19 18 17 21 21 C 1.53780 * 113.61278 * 176.53006 * 18 17 16 22 22 C 1.39039 * 119.94304 * 359.51274 * 13 12 11 23 23 H 0.96996 * 119.99976 * 0.02562 * 1 2 3 24 24 H 1.07996 * 119.97691 * 0.02562 * 10 9 7 25 25 H 1.08000 * 119.79423 * 180.02562 * 11 10 9 26 26 H 1.08008 * 119.82164 * 180.23805 * 12 11 10 27 27 H 0.97005 * 120.00341 * 0.02562 * 16 14 13 28 28 H 1.09003 * 109.47426 * 300.00030 * 17 16 14 29 29 H 1.09002 * 109.47225 * 60.00181 * 17 16 14 30 30 H 1.08995 * 112.84998 * 45.33771 * 18 17 16 31 31 H 1.09001 * 113.61398 * 334.56512 * 19 18 17 32 32 H 1.08999 * 113.61402 * 105.47250 * 19 18 17 33 33 H 1.09004 * 113.53576 * 270.80739 * 20 19 18 34 34 H 1.09004 * 113.66129 * 139.93437 * 20 19 18 35 35 H 1.08998 * 113.61573 * 254.52649 * 21 18 17 36 36 H 1.09001 * 113.61865 * 25.35207 * 21 18 17 37 37 H 1.07996 * 120.19663 * 180.23035 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4397 2.6528 0.7000 6 1 3.5398 1.4403 0.7000 7 6 2.0079 -1.2119 0.0005 8 1 3.0509 -1.2334 -0.2790 9 6 1.3494 -2.4086 0.3671 10 6 1.8189 -3.6485 -0.1063 11 6 1.1751 -4.8119 0.2520 12 6 0.0680 -4.7730 1.0811 13 6 -0.4163 -3.5500 1.5571 14 6 -1.6029 -3.5166 2.4388 15 8 -2.0202 -2.4540 2.8562 16 7 -2.2217 -4.6644 2.7798 17 6 -3.3969 -4.6314 3.6538 18 6 -3.9023 -6.0572 3.8830 19 6 -4.8649 -6.5526 2.7908 20 6 -5.6836 -7.2036 3.9206 21 6 -5.0876 -6.1411 4.8591 22 6 0.2225 -2.3663 1.2050 23 1 -0.4850 0.8400 -0.0004 24 1 2.6845 -3.6873 -0.7510 25 1 1.5390 -5.7610 -0.1132 26 1 -0.4273 -5.6916 1.3592 27 1 -1.8884 -5.5125 2.4470 28 1 -3.1261 -4.1842 4.6102 29 1 -4.1820 -4.0383 3.1848 30 1 -3.0999 -6.7594 4.1092 31 1 -5.3923 -5.7492 2.2765 32 1 -4.4153 -7.2717 2.1060 33 1 -5.3689 -8.2203 4.1560 34 1 -6.7617 -7.1133 3.7874 35 1 -4.8177 -6.5285 5.8415 36 1 -5.6753 -5.2246 4.9123 37 1 -0.1457 -1.4201 1.5731 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049698216.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:47 Heat of formation + Delta-G solvation = -30.101474 kcal Electronic energy + Delta-G solvation = -18436.961096 eV Core-core repulsion = 15564.031127 eV Total energy + Delta-G solvation = -2872.929969 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.00889 -39.68171 -38.71401 -35.73048 -35.30906 -32.16723 -31.28712 -29.20934 -27.16410 -26.47917 -24.65348 -23.24100 -22.70757 -21.35674 -20.25929 -19.43631 -18.03009 -17.19550 -16.87389 -16.53548 -16.38567 -15.94596 -15.51615 -15.08855 -14.97736 -14.43200 -14.34919 -14.25560 -13.48046 -13.32299 -12.99342 -12.84951 -12.77568 -12.63813 -12.51021 -12.20248 -11.92241 -11.55575 -11.48230 -11.31191 -11.14679 -11.06902 -10.72270 -10.13168 -9.46778 -9.38636 -8.66736 -6.38787 0.37524 1.00653 1.36065 1.46244 1.52534 2.09379 2.19288 2.26974 2.78762 3.65662 3.70317 3.70664 3.81646 3.99845 4.07046 4.32308 4.41832 4.52776 4.59827 4.70009 4.88138 4.89096 4.90095 4.99494 5.08479 5.12443 5.12804 5.19148 5.30254 5.31688 5.48091 5.52039 5.63156 5.86431 5.92193 6.04945 6.28353 6.51513 6.69375 6.87532 6.94436 7.31308 8.30233 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.032455 B = 0.004308 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.522637 B = 6498.295141 C = 7151.787307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.029 3.971 3 Si 0.983 3.017 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.255 1.255 7 C -0.499 4.499 8 H 0.085 0.915 9 C 0.067 3.933 10 C -0.217 4.217 11 C -0.095 4.095 12 C -0.197 4.197 13 C -0.140 4.140 14 C 0.557 3.443 15 O -0.593 6.593 16 N -0.710 5.710 17 C 0.129 3.871 18 C -0.119 4.119 19 C -0.141 4.141 20 C -0.132 4.132 21 C -0.131 4.131 22 C -0.133 4.133 23 H 0.286 0.714 24 H 0.109 0.891 25 H 0.140 0.860 26 H 0.137 0.863 27 H 0.413 0.587 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.073 -13.079 5.656 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.186 4.186 3 Si 0.803 3.197 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.528 4.528 8 H 0.103 0.897 9 C 0.065 3.935 10 C -0.236 4.236 11 C -0.113 4.113 12 C -0.217 4.217 13 C -0.143 4.143 14 C 0.346 3.654 15 O -0.475 6.475 16 N -0.363 5.363 17 C 0.005 3.995 18 C -0.138 4.138 19 C -0.179 4.179 20 C -0.170 4.170 21 C -0.169 4.169 22 C -0.153 4.153 23 H 0.097 0.903 24 H 0.127 0.873 25 H 0.158 0.842 26 H 0.155 0.845 27 H 0.251 0.749 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.128 0.872 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.611 -12.209 5.953 15.570 hybrid contribution 0.384 0.926 -0.290 1.044 sum -7.226 -11.283 5.662 14.546 Atomic orbital electron populations 1.69893 1.09306 1.30595 1.35459 1.26870 0.95399 1.05018 0.91293 0.85190 0.79064 0.75692 0.79712 1.18092 1.19779 1.17805 1.19870 0.98454 0.92199 1.42304 0.89725 1.17943 0.91749 0.93984 0.89796 1.21425 1.03909 0.92830 1.05470 1.20935 0.95345 0.97743 0.97303 1.20864 1.00623 0.95098 1.05076 1.19803 0.96988 0.95615 1.01900 1.18801 0.83260 0.83673 0.79623 1.90665 1.67686 1.32147 1.57019 1.45759 1.30850 1.08580 1.51095 1.21450 0.86512 0.98347 0.93155 1.22850 0.97888 0.93970 0.99082 1.23056 0.97667 1.00526 0.96638 1.22818 0.99951 0.98744 0.95465 1.22891 0.95949 0.99923 0.98088 1.21440 0.98362 0.96377 0.99138 0.90341 0.87260 0.84202 0.84501 0.74905 0.92764 0.93078 0.87214 0.91025 0.90593 0.88826 0.90832 0.90128 0.90256 0.88511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.97 10.97 21.82 0.24 -46.73 16 2 C 0.03 1.54 5.14 85.25 0.44 1.97 16 3 Si 0.98 40.13 29.59 68.60 2.03 42.16 16 4 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 6 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.50 -27.53 9.05 23.47 0.21 -27.32 16 8 H 0.08 4.39 7.90 -2.91 -0.02 4.36 16 9 C 0.07 3.72 5.57 -21.32 -0.12 3.60 16 10 C -0.22 -10.18 9.78 22.77 0.22 -9.96 16 11 C -0.10 -3.78 10.01 22.18 0.22 -3.56 16 12 C -0.20 -7.77 9.55 22.70 0.22 -7.56 16 13 C -0.14 -6.75 5.87 -20.13 -0.12 -6.86 16 14 C 0.56 25.21 7.77 86.80 0.67 25.88 16 15 O -0.59 -31.96 16.33 -3.87 -0.06 -32.02 16 16 N -0.71 -22.96 5.51 -465.93 -2.57 -25.52 16 17 C 0.13 3.54 5.50 86.38 0.47 4.01 16 18 C -0.12 -2.17 3.75 -10.27 -0.04 -2.21 16 19 C -0.14 -2.37 7.65 31.18 0.24 -2.14 16 20 C -0.13 -1.75 8.09 31.18 0.25 -1.49 16 21 C -0.13 -1.98 7.65 31.12 0.24 -1.75 16 22 C -0.13 -7.51 8.23 23.01 0.19 -7.33 16 23 H 0.29 14.98 8.30 -92.71 -0.77 14.21 16 24 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 25 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 26 H 0.14 4.04 6.38 -2.91 -0.02 4.02 16 27 H 0.41 10.69 6.49 -92.70 -0.60 10.09 16 28 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.05 1.55 7.88 -2.39 -0.02 1.53 16 30 H 0.11 1.72 8.14 -2.39 -0.02 1.71 16 31 H 0.07 1.38 7.92 -2.39 -0.02 1.36 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.29 8.10 -2.39 -0.02 1.27 16 37 H 0.10 6.13 5.76 -2.91 -0.02 6.11 16 Total: -1.00 -69.46 311.01 3.22 -66.24 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: 0.47 Total: 30.57 kcal Atomic # 6 Polarization: -37.81 SS G_CDS: 3.10 Total: -34.70 kcal Atomic # 7 Polarization: -69.92 SS G_CDS: -2.33 Total: -72.25 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.06 Total: -32.02 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Total: -69.46 3.22 -66.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049698216.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.141 kcal (2) G-P(sol) polarization free energy of solvation -69.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds