Wall clock time and date at job start Sun Mar 29 2020 23:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86803 * 119.99781 * 2 1 4 4 H 1.48503 * 109.46831 * 239.99444 * 3 2 1 5 5 H 1.48502 * 109.47266 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47018 * 119.99888 * 3 2 1 7 7 C 1.38953 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99832 * 198.21360 * 7 2 1 9 9 N 1.37094 * 119.99593 * 18.20860 * 7 2 1 10 10 C 1.34774 * 120.00291 * 44.29358 * 9 7 2 11 11 O 1.21299 * 119.99848 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00539 * 179.97438 * 10 9 7 13 13 C 1.52996 * 109.47661 * 179.97438 * 12 10 9 14 14 C 1.50695 * 109.47295 * 180.02562 * 13 12 10 15 15 C 1.38235 * 120.00191 * 90.00144 * 14 13 12 16 16 C 1.38236 * 120.00326 * 179.97438 * 15 14 13 17 17 C 1.38240 * 119.99629 * 0.07090 * 16 15 14 18 18 C 1.38230 * 120.00016 * 359.90891 * 17 16 15 19 19 C 1.38229 * 120.00175 * 0.04150 * 18 17 16 20 20 C 1.46499 * 119.99820 * 224.28731 * 9 7 2 21 21 C 1.53002 * 117.50132 * 3.23162 * 20 9 7 22 22 C 1.53003 * 117.50313 * 294.60467 * 20 9 7 23 23 H 0.96997 * 120.00185 * 354.93036 * 1 2 3 24 24 H 1.09000 * 109.46777 * 59.99764 * 12 10 9 25 25 H 1.08998 * 109.47259 * 300.00548 * 12 10 9 26 26 H 1.09001 * 109.46915 * 59.99632 * 13 12 10 27 27 H 1.09002 * 109.47003 * 300.00154 * 13 12 10 28 28 H 1.07998 * 119.99577 * 359.70448 * 15 14 13 29 29 H 1.07998 * 119.99997 * 179.97438 * 16 15 14 30 30 H 1.08001 * 119.99435 * 179.97438 * 17 16 15 31 31 H 1.08002 * 119.99564 * 180.02562 * 18 17 16 32 32 H 1.07999 * 120.00335 * 180.02562 * 19 18 17 33 33 H 1.09003 * 115.55066 * 148.94070 * 20 9 7 34 34 H 1.08999 * 117.49472 * 359.97438 * 21 20 9 35 35 H 1.08998 * 117.49905 * 145.02032 * 21 20 9 36 36 H 1.08990 * 117.50080 * 214.98251 * 22 20 9 37 37 H 1.09001 * 117.49132 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0483 -1.2266 0.2929 9 7 1.3749 -2.3610 -0.3700 10 6 0.5785 -2.3750 -1.4571 11 8 0.4222 -1.3631 -2.1075 12 6 -0.1180 -3.6477 -1.8647 13 6 -0.9536 -3.3921 -3.1206 14 6 -1.6506 -4.6647 -3.5278 15 6 -2.9077 -4.9537 -3.0308 16 6 -3.5473 -6.1208 -3.4048 17 6 -2.9290 -6.9996 -4.2745 18 6 -1.6721 -6.7103 -4.7718 19 6 -1.0330 -5.5428 -4.3986 20 6 1.5633 -3.5830 0.4158 21 6 2.4184 -3.4848 1.6808 22 6 2.9643 -4.1974 0.4417 23 1 -0.4850 0.8367 0.0742 24 1 -0.7696 -3.9801 -1.0566 25 1 0.6248 -4.4178 -2.0725 26 1 -0.3024 -3.0594 -3.9288 27 1 -1.6965 -2.6221 -2.9122 28 1 -3.3884 -4.2698 -2.3470 29 1 -4.5293 -6.3468 -3.0162 30 1 -3.4285 -7.9116 -4.5663 31 1 -1.1893 -7.3967 -5.4516 32 1 -0.0511 -5.3166 -4.7874 33 1 0.7140 -4.2660 0.4338 34 1 2.8411 -2.5111 1.9281 35 1 2.1316 -4.1031 2.5314 36 1 3.0366 -5.2844 0.4772 37 1 3.7458 -3.6926 -0.1262 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057517943.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:47:18 Heat of formation + Delta-G solvation = 0.777656 kcal Electronic energy + Delta-G solvation = -18905.546286 eV Core-core repulsion = 16033.955336 eV Total energy + Delta-G solvation = -2871.590949 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.59613 -39.90972 -37.81059 -35.17877 -34.40795 -32.82845 -31.71732 -30.51622 -27.33120 -25.10390 -23.38862 -23.13066 -22.76841 -21.93961 -20.76140 -18.35940 -17.82587 -17.45213 -16.75519 -16.46104 -16.01972 -15.88238 -15.54781 -15.16399 -14.66269 -14.24285 -14.10776 -13.84926 -13.63984 -13.51752 -12.94899 -12.82039 -12.72250 -12.53442 -12.24762 -12.15302 -12.04825 -11.80478 -11.68086 -11.61633 -11.21679 -10.71491 -9.97891 -9.76894 -9.52411 -8.95643 -8.19738 -5.97978 0.49783 0.55312 1.34966 1.43952 1.47282 2.25540 2.42590 2.90313 3.11279 3.15858 3.37098 3.84408 3.97821 4.12777 4.21456 4.24324 4.27074 4.31795 4.35003 4.38887 4.54794 4.68288 4.72223 4.75629 4.89446 5.02595 5.07942 5.14363 5.24731 5.28444 5.30341 5.46304 5.50050 5.63916 5.66781 5.82710 6.18580 6.21055 7.04983 7.22025 7.72134 8.38577 8.89234 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.024785 B = 0.005308 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.454300 B = 5273.519748 C = 5928.683042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.021 3.979 3 Si 0.970 3.030 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.255 1.255 7 C -0.358 4.358 8 H 0.076 0.924 9 N -0.446 5.446 10 C 0.465 3.535 11 O -0.589 6.589 12 C -0.105 4.105 13 C -0.052 4.052 14 C -0.087 4.087 15 C -0.134 4.134 16 C -0.122 4.122 17 C -0.129 4.129 18 C -0.120 4.120 19 C -0.129 4.129 20 C 0.043 3.957 21 C -0.171 4.171 22 C -0.179 4.179 23 H 0.259 0.741 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.116 0.884 29 H 0.142 0.858 30 H 0.149 0.851 31 H 0.146 0.854 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.125 0.875 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.827 -15.657 -3.679 16.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.184 4.184 3 Si 0.795 3.205 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.180 1.180 7 C -0.486 4.486 8 H 0.094 0.906 9 N -0.166 5.166 10 C 0.254 3.746 11 O -0.471 6.471 12 C -0.145 4.145 13 C -0.090 4.090 14 C -0.087 4.087 15 C -0.152 4.152 16 C -0.140 4.140 17 C -0.147 4.147 18 C -0.138 4.138 19 C -0.147 4.147 20 C -0.062 4.062 21 C -0.208 4.208 22 C -0.218 4.218 23 H 0.068 0.932 24 H 0.101 0.899 25 H 0.115 0.885 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.134 0.866 29 H 0.160 0.840 30 H 0.166 0.834 31 H 0.164 0.836 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.099 0.901 35 H 0.135 0.865 36 H 0.143 0.857 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.069 -15.012 -4.053 15.850 hybrid contribution 0.292 1.476 0.201 1.518 sum -2.777 -13.536 -3.852 14.345 Atomic orbital electron populations 1.69931 1.08027 1.27618 1.45327 1.26060 0.95515 1.02607 0.94265 0.85383 0.78151 0.78194 0.78798 1.20769 1.21299 1.17969 1.19060 0.94684 0.85321 1.49489 0.90622 1.43036 1.43905 1.07745 1.21959 1.20850 0.82628 0.90211 0.80866 1.90471 1.64406 1.37160 1.55042 1.21411 0.99236 0.95640 0.98259 1.20120 0.97945 0.94204 0.96757 1.19923 0.95193 0.95846 0.97735 1.21231 0.94975 0.98431 1.00584 1.21418 1.00696 0.93760 0.98086 1.21494 0.95491 1.00253 0.97435 1.21446 0.95616 0.96673 1.00044 1.21249 1.00464 0.94901 0.98093 1.22010 0.95001 0.90596 0.98570 1.23110 1.03624 1.02093 0.92020 1.23319 0.96771 1.00469 1.01232 0.93209 0.89938 0.88513 0.92068 0.93202 0.86615 0.84023 0.83370 0.83622 0.85662 0.85914 0.90131 0.86476 0.85712 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.29 11.74 21.66 0.25 -54.04 16 2 C 0.02 1.25 4.39 84.93 0.37 1.62 16 3 Si 0.97 46.64 29.59 68.60 2.03 48.67 16 4 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 7 C -0.36 -20.17 7.92 84.04 0.67 -19.51 16 8 H 0.08 4.12 7.26 -2.91 -0.02 4.10 16 9 N -0.45 -22.85 2.83 -613.13 -1.74 -24.59 16 10 C 0.46 24.34 6.97 87.66 0.61 24.95 16 11 O -0.59 -36.37 13.74 -3.09 -0.04 -36.42 16 12 C -0.11 -4.12 4.30 29.85 0.13 -3.99 16 13 C -0.05 -1.96 4.63 29.84 0.14 -1.82 16 14 C -0.09 -2.61 5.13 -19.87 -0.10 -2.72 16 15 C -0.13 -3.68 9.70 22.27 0.22 -3.46 16 16 C -0.12 -2.63 10.05 22.27 0.22 -2.41 16 17 C -0.13 -2.45 10.05 22.27 0.22 -2.22 16 18 C -0.12 -2.45 10.05 22.27 0.22 -2.23 16 19 C -0.13 -3.31 9.70 22.27 0.22 -3.09 16 20 C 0.04 1.70 5.87 44.99 0.26 1.96 16 21 C -0.17 -5.92 9.80 30.60 0.30 -5.62 16 22 C -0.18 -5.72 10.36 30.60 0.32 -5.41 16 23 H 0.26 15.53 8.32 -92.71 -0.77 14.76 16 24 H 0.08 3.05 7.56 -2.39 -0.02 3.03 16 25 H 0.10 3.29 8.11 -2.39 -0.02 3.27 16 26 H 0.06 2.39 8.04 -2.39 -0.02 2.37 16 27 H 0.05 2.10 8.04 -2.39 -0.02 2.08 16 28 H 0.12 3.20 8.06 -2.91 -0.02 3.18 16 29 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 30 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 31 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 33 H 0.12 4.23 6.96 -2.39 -0.02 4.22 16 34 H 0.08 3.23 6.72 -2.39 -0.02 3.21 16 35 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 36 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -73.95 313.87 5.35 -68.60 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 1.04 Total: 21.72 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: 3.80 Total: -23.94 kcal Atomic # 7 Polarization: -77.15 SS G_CDS: -1.48 Total: -78.63 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -0.04 Total: -36.42 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -73.95 5.35 -68.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057517943.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.380 kcal (2) G-P(sol) polarization free energy of solvation -73.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds