Wall clock time and date at job start Mon Mar 30 2020 00:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38417 * 119.91476 * 2 1 4 4 C 1.38385 * 120.34428 * 180.02562 * 3 2 1 5 5 C 1.37907 * 120.17290 * 359.97438 * 4 3 2 6 6 C 1.39822 * 119.82390 * 359.97438 * 5 4 3 7 7 C 1.47208 * 120.16587 * 179.97438 * 6 5 4 8 8 C 1.34800 * 120.00486 * 0.02562 * 7 6 5 9 9 C 1.46428 * 120.00462 * 179.97438 * 8 7 6 10 10 O 1.21698 * 119.99529 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00480 * 179.97438 * 9 8 7 12 12 C 1.46490 * 120.00268 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.46993 * 35.00779 * 12 11 9 14 14 C 1.52998 * 109.47380 * 275.00307 * 12 11 9 15 15 C 1.50703 * 109.47446 * 155.00125 * 12 11 9 16 16 H 1.08005 * 119.99551 * 35.00526 * 15 12 11 17 17 C 1.37868 * 120.00466 * 215.00504 * 15 12 11 18 18 N 1.31512 * 120.00194 * 184.91737 * 17 15 12 19 19 Si 1.86802 * 120.00167 * 4.91686 * 17 15 12 20 20 H 1.48496 * 109.47292 * 84.83080 * 19 17 15 21 21 H 1.48494 * 109.47356 * 204.83526 * 19 17 15 22 22 H 1.48500 * 109.46883 * 324.83313 * 19 17 15 23 23 C 1.37873 * 119.91285 * 180.24925 * 2 1 3 24 24 H 1.09005 * 109.46748 * 90.00120 * 1 2 3 25 25 H 1.08999 * 109.47271 * 210.00156 * 1 2 3 26 26 H 1.09001 * 109.47271 * 330.00739 * 1 2 3 27 27 H 1.07999 * 119.82887 * 0.02562 * 3 2 1 28 28 H 1.07998 * 119.91254 * 179.97438 * 4 3 2 29 29 H 1.08001 * 120.08905 * 179.97438 * 5 4 3 30 30 H 1.08002 * 119.99615 * 180.02562 * 7 6 5 31 31 H 1.08002 * 119.99898 * 0.02562 * 8 7 6 32 32 H 0.97006 * 119.99628 * 0.02562 * 11 9 8 33 33 H 1.09007 * 109.46978 * 55.04113 * 14 12 11 34 34 H 1.08995 * 109.47334 * 295.03354 * 14 12 11 35 35 H 1.09001 * 109.47232 * 175.03013 * 14 12 11 36 36 H 0.97002 * 119.99993 * 180.02562 * 18 17 15 37 37 H 1.07996 * 120.09129 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1998 0.0000 4 6 3.5811 1.2101 -0.0005 5 6 4.2831 0.0231 -0.0005 6 6 3.5931 -1.1929 0.0005 7 6 4.3349 -2.4644 0.0000 8 6 5.6829 -2.4584 -0.0011 9 6 6.4208 -3.7232 -0.0011 10 8 5.8170 -4.7798 -0.0006 11 7 7.7685 -3.7172 -0.0026 12 6 8.5067 -4.9825 -0.0032 13 1 7.9620 -5.7206 -0.5920 14 6 8.6567 -5.4861 1.4337 15 6 9.8714 -4.7677 -0.6052 16 1 10.3927 -3.8359 -0.4428 17 6 10.4546 -5.7607 -1.3633 18 7 11.6834 -5.6128 -1.8078 19 14 9.4992 -7.3164 -1.7592 20 1 8.6557 -7.0873 -2.9597 21 1 10.4490 -8.4262 -2.0261 22 1 8.6334 -7.6723 -0.6065 23 6 2.1945 -1.1951 -0.0052 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8901 0.5137 27 1 1.6531 2.1326 0.0004 28 1 4.1126 2.1503 -0.0009 29 1 5.3631 0.0328 -0.0014 30 1 3.7991 -3.4022 0.0004 31 1 6.2187 -1.5207 -0.0011 32 1 8.2497 -2.8749 -0.0034 33 1 7.6731 -5.5576 1.8982 34 1 9.2762 -4.7906 1.9997 35 1 9.1274 -6.4692 1.4269 36 1 12.0936 -6.3113 -2.3415 37 1 1.6546 -2.1304 -0.0088 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064333280.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:14:56 Heat of formation + Delta-G solvation = -12.588259 kcal Electronic energy + Delta-G solvation = -17898.753813 eV Core-core repulsion = 15026.583274 eV Total energy + Delta-G solvation = -2872.170539 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.62093 -38.85386 -35.08766 -34.27589 -32.39639 -32.32150 -30.46427 -29.24134 -27.04155 -25.32508 -24.19874 -22.25877 -21.32908 -19.74570 -18.98216 -17.61874 -16.80054 -16.14332 -15.58295 -15.14113 -14.88842 -14.16638 -14.05182 -13.97601 -13.58214 -13.32534 -13.16790 -12.52333 -12.50345 -12.46212 -12.34498 -11.96796 -11.50153 -11.34495 -11.09335 -11.04650 -10.80354 -10.57767 -10.23392 -9.87535 -9.23985 -9.19633 -8.94132 -8.69955 -8.33527 -7.99847 -6.23267 -4.27047 0.57224 1.20887 2.09456 3.27207 3.34730 3.42366 3.60831 3.97190 4.01940 4.33189 4.57029 4.64192 4.72700 4.90609 5.07353 5.15481 5.20902 5.25518 5.32840 5.39316 5.56095 5.63214 5.79445 5.91346 6.07592 6.23507 6.32638 6.35995 6.49085 6.54413 6.63819 6.69020 6.80402 6.95590 7.20851 7.39264 7.56087 8.15112 8.58411 8.77213 8.99456 9.38953 10.88488 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.039492 B = 0.003520 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.839276 B = 7953.691698 C = 8215.208556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.119 4.119 4 C -0.117 4.117 5 C -0.112 4.112 6 C -0.057 4.057 7 C -0.050 4.050 8 C -0.185 4.185 9 C 0.528 3.472 10 O -0.564 6.564 11 N -0.696 5.696 12 C 0.229 3.771 13 H 0.050 0.950 14 C -0.147 4.147 15 C -0.531 4.531 16 H 0.079 0.921 17 C 0.081 3.919 18 N -0.889 5.889 19 Si 0.875 3.125 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.260 1.260 23 C -0.103 4.103 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.120 0.880 28 H 0.124 0.876 29 H 0.129 0.871 30 H 0.134 0.866 31 H 0.126 0.874 32 H 0.394 0.606 33 H 0.029 0.971 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.268 0.732 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.394 13.108 3.899 22.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.137 4.137 4 C -0.135 4.135 5 C -0.130 4.130 6 C -0.057 4.057 7 C -0.070 4.070 8 C -0.206 4.206 9 C 0.316 3.684 10 O -0.446 6.446 11 N -0.343 5.343 12 C 0.127 3.873 13 H 0.068 0.932 14 C -0.206 4.206 15 C -0.569 4.569 16 H 0.097 0.903 17 C -0.124 4.124 18 N -0.526 5.526 19 Si 0.701 3.299 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.185 1.185 23 C -0.121 4.121 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.138 0.862 28 H 0.142 0.858 29 H 0.146 0.854 30 H 0.152 0.848 31 H 0.144 0.856 32 H 0.228 0.772 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -18.596 12.243 3.790 22.585 hybrid contribution 0.026 -0.339 -0.323 0.469 sum -18.571 11.905 3.467 22.330 Atomic orbital electron populations 1.20796 0.91104 1.02801 1.02385 1.19849 0.96137 0.93058 1.00022 1.21130 0.94316 0.97418 1.00851 1.21077 0.94200 0.98056 1.00154 1.21466 1.00278 0.91749 0.99505 1.19098 0.93247 0.92938 1.00432 1.22275 0.94134 0.96330 0.94261 1.23233 0.95277 0.98153 1.03912 1.18375 0.83309 0.89016 0.77725 1.90748 1.68882 1.32955 1.51996 1.46565 1.05031 1.11476 1.71253 1.19144 0.91902 0.82493 0.93758 0.93167 1.22215 0.98852 1.00802 0.98742 1.21016 0.99399 1.04050 1.32408 0.90307 1.24941 0.94737 0.98278 0.94404 1.69883 1.12899 1.34569 1.35218 0.86885 0.80042 0.82933 0.80011 1.19835 1.21169 1.18454 1.21255 0.93068 0.97897 0.99849 0.91144 0.91443 0.91573 0.86158 0.85800 0.85362 0.84780 0.85649 0.77233 0.95195 0.93393 0.92893 0.92232 0.85588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.01 36.00 0.36 -0.41 16 2 C -0.09 -0.85 5.87 -104.69 -0.61 -1.47 16 3 C -0.12 -1.07 9.69 -39.46 -0.38 -1.45 16 4 C -0.12 -1.10 10.03 -39.65 -0.40 -1.50 16 5 C -0.11 -1.22 9.41 -39.11 -0.37 -1.59 16 6 C -0.06 -0.69 5.87 -105.06 -0.62 -1.31 16 7 C -0.05 -0.70 9.46 -37.16 -0.35 -1.05 16 8 C -0.18 -2.79 9.41 -37.51 -0.35 -3.14 16 9 C 0.53 10.54 7.71 -12.96 -0.10 10.44 16 10 O -0.56 -13.26 15.89 5.19 0.08 -13.17 16 11 N -0.70 -14.36 5.06 -56.33 -0.29 -14.65 16 12 C 0.23 5.57 2.22 -69.09 -0.15 5.42 16 13 H 0.05 1.33 4.73 -51.93 -0.25 1.09 16 14 C -0.15 -3.29 9.47 37.16 0.35 -2.94 16 15 C -0.53 -14.41 9.05 -34.44 -0.31 -14.72 16 16 H 0.08 2.24 8.06 -52.48 -0.42 1.82 16 17 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 18 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 19 Si 0.87 21.81 26.99 -169.99 -4.59 17.22 16 20 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.26 -6.40 6.82 56.52 0.39 -6.02 16 23 C -0.10 -1.10 9.44 -39.11 -0.37 -1.47 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 26 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 27 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 28 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 29 H 0.13 1.24 6.17 -52.49 -0.32 0.92 16 30 H 0.13 1.96 7.52 -52.49 -0.39 1.56 16 31 H 0.13 1.52 6.07 -52.49 -0.32 1.20 16 32 H 0.39 7.08 8.57 -40.82 -0.35 6.73 16 33 H 0.03 0.64 8.14 -51.92 -0.42 0.21 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 318.38 15.07 4.80 4.80 Total: -1.00 -32.20 318.38 -7.63 -39.83 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -5.01 Total: 4.55 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -3.40 Total: -13.02 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.49 Total: -40.21 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.08 Total: -13.17 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.59 Total: 17.22 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.20 -7.63 -39.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333280.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.239 kcal (2) G-P(sol) polarization free energy of solvation -32.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds