Wall clock time and date at job start Mon Mar 30 2020 00:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38417 * 119.91476 * 2 1 4 4 C 1.38385 * 120.34428 * 180.02562 * 3 2 1 5 5 C 1.37907 * 120.17290 * 359.97438 * 4 3 2 6 6 C 1.39822 * 119.82390 * 359.97438 * 5 4 3 7 7 C 1.47208 * 120.16587 * 179.97438 * 6 5 4 8 8 C 1.34800 * 120.00486 * 0.02562 * 7 6 5 9 9 C 1.46428 * 120.00462 * 179.97438 * 8 7 6 10 10 O 1.21698 * 119.99529 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00480 * 179.97438 * 9 8 7 12 12 C 1.46490 * 120.00268 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.46993 * 35.00779 * 12 11 9 14 14 C 1.52998 * 109.47380 * 275.00307 * 12 11 9 15 15 C 1.50703 * 109.47446 * 155.00125 * 12 11 9 16 16 H 1.08005 * 119.99551 * 35.00526 * 15 12 11 17 17 C 1.37868 * 120.00466 * 215.00504 * 15 12 11 18 18 N 1.31512 * 120.00194 * 184.91737 * 17 15 12 19 19 Si 1.86802 * 120.00167 * 4.91686 * 17 15 12 20 20 H 1.48496 * 109.47292 * 84.83080 * 19 17 15 21 21 H 1.48494 * 109.47356 * 204.83526 * 19 17 15 22 22 H 1.48500 * 109.46883 * 324.83313 * 19 17 15 23 23 C 1.37873 * 119.91285 * 180.24925 * 2 1 3 24 24 H 1.09005 * 109.46748 * 90.00120 * 1 2 3 25 25 H 1.08999 * 109.47271 * 210.00156 * 1 2 3 26 26 H 1.09001 * 109.47271 * 330.00739 * 1 2 3 27 27 H 1.07999 * 119.82887 * 0.02562 * 3 2 1 28 28 H 1.07998 * 119.91254 * 179.97438 * 4 3 2 29 29 H 1.08001 * 120.08905 * 179.97438 * 5 4 3 30 30 H 1.08002 * 119.99615 * 180.02562 * 7 6 5 31 31 H 1.08002 * 119.99898 * 0.02562 * 8 7 6 32 32 H 0.97006 * 119.99628 * 0.02562 * 11 9 8 33 33 H 1.09007 * 109.46978 * 55.04113 * 14 12 11 34 34 H 1.08995 * 109.47334 * 295.03354 * 14 12 11 35 35 H 1.09001 * 109.47232 * 175.03013 * 14 12 11 36 36 H 0.97002 * 119.99993 * 180.02562 * 18 17 15 37 37 H 1.07996 * 120.09129 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1998 0.0000 4 6 3.5811 1.2101 -0.0005 5 6 4.2831 0.0231 -0.0005 6 6 3.5931 -1.1929 0.0005 7 6 4.3349 -2.4644 0.0000 8 6 5.6829 -2.4584 -0.0011 9 6 6.4208 -3.7232 -0.0011 10 8 5.8170 -4.7798 -0.0006 11 7 7.7685 -3.7172 -0.0026 12 6 8.5067 -4.9825 -0.0032 13 1 7.9620 -5.7206 -0.5920 14 6 8.6567 -5.4861 1.4337 15 6 9.8714 -4.7677 -0.6052 16 1 10.3927 -3.8359 -0.4428 17 6 10.4546 -5.7607 -1.3633 18 7 11.6834 -5.6128 -1.8078 19 14 9.4992 -7.3164 -1.7592 20 1 8.6557 -7.0873 -2.9597 21 1 10.4490 -8.4262 -2.0261 22 1 8.6334 -7.6723 -0.6065 23 6 2.1945 -1.1951 -0.0052 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8901 0.5137 27 1 1.6531 2.1326 0.0004 28 1 4.1126 2.1503 -0.0009 29 1 5.3631 0.0328 -0.0014 30 1 3.7991 -3.4022 0.0004 31 1 6.2187 -1.5207 -0.0011 32 1 8.2497 -2.8749 -0.0034 33 1 7.6731 -5.5576 1.8982 34 1 9.2762 -4.7906 1.9997 35 1 9.1274 -6.4692 1.4269 36 1 12.0936 -6.3113 -2.3415 37 1 1.6546 -2.1304 -0.0088 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064333280.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:14:55 Heat of formation + Delta-G solvation = -32.240942 kcal Electronic energy + Delta-G solvation = -17899.606018 eV Core-core repulsion = 15026.583274 eV Total energy + Delta-G solvation = -2873.022743 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.74930 -40.12275 -36.83344 -35.36136 -34.39222 -33.12848 -31.95475 -30.51856 -27.69208 -27.35636 -25.41458 -23.03685 -22.74728 -21.43327 -20.27830 -19.17952 -18.14433 -17.43587 -17.13213 -16.34587 -15.84262 -15.73756 -15.65741 -14.87081 -14.65664 -14.55717 -14.52128 -14.17732 -14.04445 -13.35546 -13.15156 -13.13174 -13.05201 -12.89687 -12.80691 -12.46728 -12.09435 -11.89202 -11.81801 -11.27041 -11.21041 -10.92653 -10.81646 -9.87564 -9.67361 -9.15527 -8.40801 -6.47130 -0.41077 0.46729 1.06202 1.28176 1.32320 1.43311 2.25692 2.37712 2.48735 2.94475 3.02494 3.69310 3.81319 4.00785 4.12828 4.18484 4.34768 4.44708 4.46081 4.49779 4.71352 4.75730 4.80807 4.85597 4.95322 5.00558 5.06142 5.17076 5.26498 5.32133 5.38574 5.44242 5.55191 5.66626 5.68918 5.72826 6.06886 6.11983 6.57644 6.89584 7.19041 7.43651 8.74207 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.039492 B = 0.003520 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.839276 B = 7953.691698 C = 8215.208556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.098 4.098 3 C -0.115 4.115 4 C -0.122 4.122 5 C -0.119 4.119 6 C -0.084 4.084 7 C -0.024 4.024 8 C -0.205 4.205 9 C 0.528 3.472 10 O -0.606 6.606 11 N -0.697 5.697 12 C 0.232 3.768 13 H 0.029 0.971 14 C -0.141 4.141 15 C -0.527 4.527 16 H 0.058 0.942 17 C 0.033 3.967 18 N -0.929 5.929 19 Si 0.926 3.074 20 H -0.275 1.275 21 H -0.275 1.275 22 H -0.257 1.257 23 C -0.112 4.112 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.147 0.853 28 H 0.148 0.852 29 H 0.137 0.863 30 H 0.122 0.878 31 H 0.156 0.844 32 H 0.407 0.593 33 H 0.036 0.964 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.271 0.729 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.465 14.844 4.290 25.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.098 4.098 3 C -0.132 4.132 4 C -0.140 4.140 5 C -0.136 4.136 6 C -0.084 4.084 7 C -0.044 4.044 8 C -0.226 4.226 9 C 0.318 3.682 10 O -0.491 6.491 11 N -0.345 5.345 12 C 0.128 3.872 13 H 0.047 0.953 14 C -0.200 4.200 15 C -0.566 4.566 16 H 0.077 0.923 17 C -0.167 4.167 18 N -0.567 5.567 19 Si 0.751 3.249 20 H -0.201 1.201 21 H -0.200 1.200 22 H -0.181 1.181 23 C -0.130 4.130 24 H 0.096 0.904 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.165 0.835 28 H 0.166 0.834 29 H 0.155 0.845 30 H 0.140 0.860 31 H 0.173 0.827 32 H 0.243 0.757 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -20.670 14.009 4.190 25.319 hybrid contribution 0.513 -0.713 -0.420 0.974 sum -20.157 13.297 3.769 24.440 Atomic orbital electron populations 1.20848 0.89223 1.03771 1.03155 1.20196 0.97633 0.92710 0.99306 1.21550 0.94452 0.98375 0.98858 1.21414 0.94670 0.98499 0.99414 1.21678 1.00964 0.91839 0.99165 1.19067 0.93817 0.92370 1.03157 1.22374 0.93856 0.97055 0.91095 1.22993 0.95357 0.96793 1.07408 1.19011 0.82798 0.90198 0.76184 1.90717 1.69474 1.34949 1.53953 1.46303 1.05558 1.10824 1.71796 1.18913 0.90348 0.83648 0.94302 0.95268 1.22109 0.99432 1.00814 0.97598 1.21190 1.00433 1.03035 1.31900 0.92346 1.25599 0.95385 1.01051 0.94679 1.69972 1.14275 1.35856 1.36647 0.86060 0.78975 0.80210 0.79641 1.20059 1.20006 1.18126 1.21468 0.92788 0.99031 0.99686 0.90377 0.91119 0.90054 0.83499 0.83401 0.84501 0.86016 0.82654 0.75730 0.94510 0.92234 0.93252 0.91946 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.01 71.24 0.71 -0.49 16 2 C -0.10 -1.60 5.87 -19.91 -0.12 -1.71 16 3 C -0.11 -1.67 9.69 22.35 0.22 -1.45 16 4 C -0.12 -1.92 10.03 22.23 0.22 -1.69 16 5 C -0.12 -2.32 9.41 22.57 0.21 -2.10 16 6 C -0.08 -1.91 5.87 -20.15 -0.12 -2.03 16 7 C -0.02 -0.65 9.46 23.84 0.23 -0.42 16 8 C -0.21 -6.03 9.41 23.61 0.22 -5.80 16 9 C 0.53 21.02 7.71 86.38 0.67 21.68 16 10 O -0.61 -28.81 15.89 -4.34 -0.07 -28.88 16 11 N -0.70 -28.65 5.06 -450.35 -2.28 -30.93 16 12 C 0.23 11.26 2.22 44.25 0.10 11.36 16 13 H 0.03 1.56 4.73 -2.39 -0.01 1.55 16 14 C -0.14 -6.22 9.47 71.98 0.68 -5.53 16 15 C -0.53 -28.93 9.05 25.60 0.23 -28.69 16 16 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 17 C 0.03 1.90 5.47 84.65 0.46 2.37 16 18 N -0.93 -55.73 13.96 21.44 0.30 -55.43 16 19 Si 0.93 45.27 26.99 68.60 1.85 47.13 16 20 H -0.27 -13.43 7.11 99.48 0.71 -12.72 16 21 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.26 -12.33 6.82 99.48 0.68 -11.65 16 23 C -0.11 -2.23 9.44 22.57 0.21 -2.01 16 24 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 25 H 0.07 0.71 8.08 -2.39 -0.02 0.69 16 26 H 0.08 0.62 8.08 -2.39 -0.02 0.61 16 27 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 28 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 29 H 0.14 2.33 6.17 -2.91 -0.02 2.31 16 30 H 0.12 3.58 7.52 -2.91 -0.02 3.56 16 31 H 0.16 3.51 6.07 -2.91 -0.02 3.49 16 32 H 0.41 14.47 8.57 -92.70 -0.79 13.67 16 33 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 37 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -69.44 318.38 3.98 -65.46 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.25 Total: 19.21 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: 3.93 Total: -16.54 kcal Atomic # 7 Polarization: -84.38 SS G_CDS: -1.98 Total: -86.37 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.07 Total: -28.88 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.85 Total: 47.13 kcal Total: -69.44 3.98 -65.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333280.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.217 kcal (2) G-P(sol) polarization free energy of solvation -69.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds