Wall clock time and date at job start Mon Mar 30 2020 00:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 119.99754 * 2 1 4 4 C 1.38213 * 120.00051 * 179.72443 * 3 2 1 5 5 C 1.38260 * 119.99848 * 0.25666 * 4 3 2 6 6 C 1.38215 * 119.99927 * 0.02562 * 5 4 3 7 7 C 1.38215 * 120.00004 * 180.26427 * 2 1 3 8 8 C 1.50700 * 120.00182 * 0.02562 * 7 2 1 9 9 H 1.09006 * 115.54714 * 334.69827 * 8 7 2 10 10 C 1.53001 * 117.49717 * 189.02849 * 8 7 2 11 11 C 1.52991 * 117.49830 * 120.37017 * 8 7 2 12 12 H 1.08999 * 117.50311 * 359.97438 * 11 8 7 13 13 C 1.50706 * 117.49919 * 215.00369 * 11 8 7 14 14 O 1.21297 * 119.99635 * 359.97438 * 13 11 8 15 15 N 1.34773 * 120.00188 * 180.02562 * 13 11 8 16 16 C 1.46502 * 119.99840 * 359.97438 * 15 13 11 17 17 C 1.37099 * 120.00091 * 179.97438 * 15 13 11 18 18 H 1.08005 * 119.99844 * 25.14772 * 17 15 13 19 19 C 1.38949 * 120.00201 * 205.14458 * 17 15 13 20 20 N 1.31410 * 119.99841 * 11.74652 * 19 17 15 21 21 Si 1.86792 * 120.00230 * 191.74385 * 19 17 15 22 22 H 1.48499 * 109.47303 * 90.00328 * 21 19 17 23 23 H 1.48501 * 109.47379 * 210.00126 * 21 19 17 24 24 H 1.48505 * 109.47435 * 330.00355 * 21 19 17 25 25 H 1.08998 * 109.47312 * 89.99510 * 1 2 3 26 26 H 1.09008 * 109.46741 * 209.99777 * 1 2 3 27 27 H 1.08997 * 109.46945 * 329.99039 * 1 2 3 28 28 H 1.08001 * 120.00410 * 0.02562 * 3 2 1 29 29 H 1.07996 * 120.00433 * 180.27968 * 4 3 2 30 30 H 1.08000 * 120.00049 * 180.02562 * 5 4 3 31 31 H 1.07994 * 119.99920 * 179.97438 * 6 5 4 32 32 H 1.08992 * 117.49909 * 0.02562 * 10 8 7 33 33 H 1.09004 * 117.49297 * 145.01964 * 10 8 7 34 34 H 1.09002 * 109.46677 * 85.06091 * 16 15 13 35 35 H 1.09004 * 109.47026 * 205.05977 * 16 15 13 36 36 H 1.08997 * 109.47355 * 325.05967 * 16 15 13 37 37 H 0.97003 * 120.00470 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 0.0058 5 6 4.2717 0.0001 0.0062 6 6 3.5807 -1.1969 0.0003 7 6 2.1981 -1.1970 -0.0055 8 6 1.4447 -2.5021 -0.0121 9 1 0.4394 -2.4667 0.4080 10 6 2.2522 -3.7850 0.1950 11 6 1.6861 -3.4512 -1.1875 12 1 2.3896 -3.1316 -1.9562 13 6 0.5160 -4.2657 -1.6759 14 8 -0.5662 -4.1546 -1.1395 15 7 0.6723 -5.1183 -2.7080 16 6 1.9796 -5.2528 -3.3554 17 6 -0.3921 -5.8596 -3.1519 18 1 -1.4003 -5.5074 -2.9906 19 6 -0.1738 -7.0641 -3.8095 20 7 1.0227 -7.6074 -3.8054 21 14 -1.5811 -7.9109 -4.6991 22 1 -1.6334 -7.4381 -6.1059 23 1 -1.3670 -9.3803 -4.6785 24 1 -2.8618 -7.5877 -4.0204 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5140 28 1 1.6583 2.1327 0.0004 29 1 4.1203 2.1327 0.0103 30 1 5.3517 0.0001 0.0111 31 1 4.1207 -2.1322 0.0001 32 1 3.3283 -3.6850 0.3364 33 1 1.7780 -4.5938 0.7510 34 1 2.5849 -5.9735 -2.8055 35 1 1.8437 -5.5991 -4.3800 36 1 2.4828 -4.2860 -3.3624 37 1 1.1751 -8.4484 -4.2641 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076984389.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:18:30 Heat of formation + Delta-G solvation = 18.206211 kcal Electronic energy + Delta-G solvation = -18856.612731 eV Core-core repulsion = 15985.777540 eV Total energy + Delta-G solvation = -2870.835191 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.87460 -38.45224 -35.95585 -34.45029 -32.72984 -31.57236 -30.37960 -26.82463 -26.43077 -24.99150 -23.77548 -22.72119 -21.27025 -20.02234 -18.46810 -17.04692 -16.74595 -15.92521 -15.34622 -14.73097 -14.61618 -14.21656 -14.11975 -13.63324 -13.52805 -13.02354 -12.94901 -12.16851 -12.06053 -11.93843 -11.81857 -11.48330 -11.31839 -11.27363 -11.00732 -10.85486 -10.60051 -10.38940 -10.31246 -10.20370 -9.87148 -8.99497 -8.69168 -8.45096 -8.22206 -7.63253 -6.31019 -3.87826 1.41575 1.46344 3.16233 3.25698 3.31299 3.59140 3.86684 4.14016 4.52907 4.64959 4.91790 4.98193 5.06335 5.10895 5.15128 5.32171 5.40611 5.40892 5.58847 5.70221 5.74756 5.84964 5.87796 5.92497 6.11110 6.17929 6.30239 6.38446 6.43169 6.49430 6.57029 6.66004 6.87501 6.89965 7.10374 7.22624 7.57396 8.17086 8.51027 9.20269 9.44393 10.02185 10.73889 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.036807 B = 0.004583 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.533616 B = 6107.505830 C = 6470.956861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.076 4.076 3 C -0.121 4.121 4 C -0.128 4.128 5 C -0.126 4.126 6 C -0.118 4.118 7 C -0.041 4.041 8 C -0.101 4.101 9 H 0.126 0.874 10 C -0.150 4.150 11 C -0.150 4.150 12 H 0.112 0.888 13 C 0.475 3.525 14 O -0.589 6.589 15 N -0.441 5.441 16 C 0.113 3.887 17 C -0.306 4.306 18 H 0.097 0.903 19 C 0.031 3.969 20 N -0.882 5.882 21 Si 0.926 3.074 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.269 1.269 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.025 0.975 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.880 12.622 5.249 15.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.076 4.076 3 C -0.140 4.140 4 C -0.146 4.146 5 C -0.144 4.144 6 C -0.136 4.136 7 C -0.042 4.042 8 C -0.120 4.120 9 H 0.144 0.856 10 C -0.188 4.188 11 C -0.171 4.171 12 H 0.130 0.870 13 C 0.262 3.738 14 O -0.475 6.475 15 N -0.159 5.159 16 C -0.030 4.030 17 C -0.434 4.434 18 H 0.115 0.885 19 C -0.172 4.172 20 N -0.521 5.521 21 Si 0.753 3.247 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.193 1.193 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.142 0.858 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.044 0.956 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.429 12.464 5.388 15.024 hybrid contribution -0.292 -0.578 -0.637 0.909 sum 6.137 11.886 4.751 14.196 Atomic orbital electron populations 1.20862 0.91059 1.02741 1.02832 1.19768 0.96295 0.92324 0.99257 1.20981 0.94230 0.97252 1.01487 1.21054 0.94288 0.97843 1.01440 1.21056 0.99572 0.92493 1.01259 1.21087 0.93711 0.98283 1.00545 1.19128 0.93004 0.93180 0.98840 1.21094 1.00447 0.87365 1.03074 0.85643 1.23018 0.99215 0.98441 0.98116 1.22362 1.00821 1.01787 0.92171 0.87027 1.19150 0.88363 0.84591 0.81647 1.90497 1.27585 1.70551 1.58844 1.43474 1.10028 1.35683 1.26722 1.21484 0.84807 0.96900 0.99854 1.19662 0.88131 1.01169 1.34446 0.88489 1.25355 0.97652 0.95946 0.98288 1.69992 1.21458 1.18607 1.42068 0.85923 0.81166 0.78098 0.79506 1.20365 1.20932 1.19345 0.90899 0.90634 0.92027 0.86313 0.86482 0.86357 0.85828 0.88416 0.88128 0.93033 0.90774 0.95620 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 9.60 36.01 0.35 -1.21 16 2 C -0.08 -1.07 5.88 -104.62 -0.62 -1.68 16 3 C -0.12 -1.47 9.70 -39.59 -0.38 -1.85 16 4 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 5 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16 6 C -0.12 -1.57 9.30 -39.58 -0.37 -1.94 16 7 C -0.04 -0.62 5.61 -104.62 -0.59 -1.21 16 8 C -0.10 -1.72 5.03 -91.78 -0.46 -2.18 16 9 H 0.13 2.31 5.77 -51.93 -0.30 2.01 16 10 C -0.15 -2.47 9.57 -26.70 -0.26 -2.73 16 11 C -0.15 -2.89 4.93 -91.74 -0.45 -3.34 16 12 H 0.11 2.00 6.51 -51.93 -0.34 1.66 16 13 C 0.47 11.85 7.41 -10.98 -0.08 11.77 16 14 O -0.59 -16.55 15.98 5.54 0.09 -16.47 16 15 N -0.44 -11.58 3.01 -122.19 -0.37 -11.95 16 16 C 0.11 2.59 8.45 59.85 0.51 3.09 16 17 C -0.31 -8.68 9.23 -14.93 -0.14 -8.81 16 18 H 0.10 2.87 7.46 -52.48 -0.39 2.48 16 19 C 0.03 0.82 5.06 -17.47 -0.09 0.73 16 20 N -0.88 -23.78 10.83 55.50 0.60 -23.17 16 21 Si 0.93 20.93 29.57 -169.99 -5.03 15.90 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.07 1.06 6.07 -51.92 -0.32 0.75 16 27 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 28 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 29 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 30 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.12 1.48 6.03 -52.49 -0.32 1.17 16 32 H 0.10 1.32 6.18 -51.93 -0.32 1.00 16 33 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 34 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 35 H 0.07 1.78 6.78 -51.93 -0.35 1.43 16 36 H 0.03 0.49 6.22 -51.93 -0.32 0.17 16 37 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 306.28 15.07 4.62 4.62 Total: -1.00 -31.21 306.28 -8.20 -39.41 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -4.73 Total: 4.72 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -3.37 Total: -13.05 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.23 Total: -35.12 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: 0.09 Total: -16.47 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.21 -8.20 -39.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076984389.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.612 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds