Wall clock time and date at job start Mon Mar 30 2020 00:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53782 * 113.61347 * 2 1 4 4 C 1.53959 * 87.01983 * 220.04777 * 3 2 1 5 5 N 1.46504 * 113.66811 * 139.93403 * 4 3 2 6 6 C 1.34766 * 119.99894 * 107.44213 * 5 4 3 7 7 O 1.21544 * 120.00458 * 359.97438 * 6 5 4 8 8 C 1.47893 * 119.99781 * 179.97438 * 6 5 4 9 9 C 1.39922 * 120.02517 * 359.71958 * 8 6 5 10 10 C 1.38318 * 120.35790 * 179.74567 * 9 8 6 11 11 C 1.37757 * 120.41354 * 0.55463 * 10 9 8 12 12 C 1.40741 * 120.03725 * 359.70258 * 11 10 9 13 13 C 1.41440 * 120.17930 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00067 * 150.17297 * 13 12 11 15 15 C 1.39940 * 119.99623 * 330.17900 * 13 12 11 16 16 N 1.30833 * 119.99441 * 161.72571 * 15 13 12 17 17 Si 1.86791 * 120.00250 * 341.72505 * 15 13 12 18 18 H 1.48505 * 109.47000 * 95.41529 * 17 15 13 19 19 H 1.48498 * 109.47318 * 215.41440 * 17 15 13 20 20 H 1.48496 * 109.47397 * 335.41929 * 17 15 13 21 21 C 1.38994 * 120.02632 * 179.97438 * 8 6 5 22 22 C 1.53775 * 113.61616 * 262.39255 * 2 1 3 23 23 H 1.08998 * 109.46831 * 159.14046 * 1 2 3 24 24 H 1.09001 * 109.47006 * 279.14191 * 1 2 3 25 25 H 1.09006 * 109.47229 * 39.14061 * 1 2 3 26 26 H 1.08996 * 112.85011 * 131.19076 * 2 1 3 27 27 H 1.09008 * 113.61706 * 334.56160 * 3 2 1 28 28 H 1.08999 * 113.61946 * 105.46776 * 3 2 1 29 29 H 1.09007 * 113.53072 * 270.80800 * 4 3 2 30 30 H 0.96996 * 119.99536 * 287.43185 * 5 4 3 31 31 H 1.08005 * 119.81342 * 359.97438 * 9 8 6 32 32 H 1.08002 * 119.79480 * 180.28264 * 10 9 8 33 33 H 1.07998 * 119.98111 * 179.72072 * 11 10 9 34 34 H 0.97006 * 119.99284 * 179.97438 * 16 15 13 35 35 H 1.08007 * 120.20091 * 359.95560 * 21 8 6 36 36 H 1.09000 * 113.61090 * 254.52702 * 22 2 1 37 37 H 1.08995 * 113.61733 * 25.43000 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4091 0.0000 4 6 3.1923 0.8643 -0.9893 5 7 3.5311 1.8020 -2.0627 6 6 4.7262 2.4248 -2.0611 7 8 5.5230 2.2088 -1.1690 8 6 5.0684 3.3710 -3.1450 9 6 4.1540 3.6155 -4.1755 10 6 4.4648 4.5031 -5.1898 11 6 5.6821 5.1478 -5.2037 12 6 6.6167 4.9105 -4.1786 13 6 7.8672 5.5712 -4.1895 14 1 8.3684 5.7941 -3.2592 15 6 8.4550 5.9363 -5.4059 16 7 9.4015 6.8392 -5.4301 17 14 7.8882 5.1344 -6.9949 18 1 6.8675 5.9941 -7.6465 19 1 9.0487 4.9666 -7.9061 20 1 7.2977 3.8053 -6.6956 21 6 6.3007 4.0140 -3.1437 22 6 2.1460 -0.1865 -1.3966 23 1 -0.3633 -0.9603 -0.3659 24 1 -0.3633 0.1633 1.0146 25 1 -0.3634 0.7971 -0.6487 26 1 1.9532 -0.6615 0.7558 27 1 1.4945 2.1705 -0.4290 28 1 2.5650 1.7025 0.9625 29 1 4.0711 0.4400 -0.5034 30 1 2.8952 1.9745 -2.7745 31 1 3.1989 3.1113 -4.1768 32 1 3.7503 4.6885 -5.9783 33 1 5.9192 5.8360 -6.0015 34 1 9.8091 7.0919 -6.2733 35 1 7.0109 3.8256 -2.3521 36 1 2.5650 -1.1794 -1.5598 37 1 1.4946 0.1377 -2.2080 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080048399.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:02:47 Heat of formation + Delta-G solvation = -12.208249 kcal Electronic energy + Delta-G solvation = -18445.633768 eV Core-core repulsion = 15573.479707 eV Total energy + Delta-G solvation = -2872.154060 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.99795 -38.49984 -37.11561 -33.80737 -33.34504 -30.72746 -30.06186 -29.07177 -25.81025 -25.28137 -23.78945 -21.80335 -20.69490 -20.14052 -19.53139 -17.81149 -16.37469 -16.19219 -15.56767 -15.36046 -14.69265 -14.49195 -13.90960 -13.70833 -13.58603 -13.07485 -12.78398 -12.75021 -12.61286 -12.33329 -12.06620 -11.72489 -11.59827 -11.09933 -11.04849 -10.78929 -10.57630 -10.54905 -10.40073 -10.01218 -9.72460 -9.41517 -9.12713 -8.76562 -7.87482 -7.76545 -7.01253 -4.55997 1.91109 2.50943 3.04792 3.16912 3.25354 3.55705 3.60233 3.92630 4.37149 4.43614 4.48556 4.70004 4.82866 5.23203 5.26147 5.32352 5.45649 5.52467 5.58822 5.61034 5.71256 5.84588 5.89607 5.93054 6.01381 6.07808 6.28721 6.39994 6.65576 6.66801 6.78635 6.97997 7.20818 7.40252 7.49149 7.74619 7.81448 8.02334 8.27612 8.52614 8.69133 8.73778 10.00977 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.045685 B = 0.004133 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.740482 B = 6773.388052 C = 7082.924667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.114 4.114 3 C -0.150 4.150 4 C 0.124 3.876 5 N -0.723 5.723 6 C 0.564 3.436 7 O -0.549 6.549 8 C -0.109 4.109 9 C -0.216 4.216 10 C -0.083 4.083 11 C -0.222 4.222 12 C 0.082 3.918 13 C -0.443 4.443 14 H 0.094 0.906 15 C 0.083 3.917 16 N -0.804 5.804 17 Si 0.911 3.089 18 H -0.269 1.269 19 H -0.289 1.289 20 H -0.244 1.244 21 C -0.136 4.136 22 C -0.144 4.144 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.400 0.600 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.286 0.714 35 H 0.115 0.885 36 H 0.072 0.928 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.441 -10.300 3.519 18.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.133 4.133 3 C -0.189 4.189 4 C 0.018 3.982 5 N -0.375 5.375 6 C 0.354 3.646 7 O -0.427 6.427 8 C -0.112 4.112 9 C -0.236 4.236 10 C -0.102 4.102 11 C -0.242 4.242 12 C 0.079 3.921 13 C -0.471 4.471 14 H 0.112 0.888 15 C -0.136 4.136 16 N -0.427 5.427 17 Si 0.737 3.263 18 H -0.195 1.195 19 H -0.216 1.216 20 H -0.167 1.167 21 C -0.156 4.156 22 C -0.182 4.182 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.109 0.891 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.130 0.870 30 H 0.236 0.764 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.097 0.903 35 H 0.133 0.867 36 H 0.091 0.909 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.621 -10.277 4.069 17.541 hybrid contribution -0.464 -0.056 -1.145 1.237 sum -14.085 -10.333 2.923 17.711 Atomic orbital electron populations 1.21694 0.94609 1.01667 1.01717 1.22318 0.95683 0.97806 0.97476 1.23594 0.98303 0.96608 1.00364 1.22428 0.96753 0.90091 0.88893 1.45928 1.18404 1.45308 1.27869 1.18828 0.80621 0.79718 0.85426 1.90686 1.49456 1.64380 1.38210 1.19456 0.96654 0.99756 0.95373 1.20379 0.99044 1.06021 0.98205 1.20509 0.96218 0.96332 0.97096 1.21176 0.94933 1.05457 1.02604 1.17699 0.93326 0.90000 0.91078 1.19528 1.02340 1.29986 0.95235 0.88831 1.26172 0.93661 0.92409 1.01369 1.69699 1.20881 1.22274 1.29895 0.86306 0.77761 0.82385 0.79816 1.19545 1.21642 1.16694 1.21285 0.95411 0.97803 1.01085 1.23415 0.97828 0.99477 0.97459 0.92614 0.92653 0.92572 0.89098 0.89755 0.91154 0.86996 0.76400 0.88638 0.88293 0.87885 0.90313 0.86668 0.90943 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.70 37.16 0.36 -0.67 16 2 C -0.11 -0.99 4.35 -89.81 -0.39 -1.38 16 3 C -0.15 -1.62 7.45 -25.82 -0.19 -1.81 16 4 C 0.12 1.56 4.24 -67.02 -0.28 1.28 16 5 N -0.72 -10.80 5.31 -53.85 -0.29 -11.08 16 6 C 0.56 11.18 7.77 -12.31 -0.10 11.09 16 7 O -0.55 -12.52 15.93 5.33 0.08 -12.44 16 8 C -0.11 -2.35 5.87 -105.03 -0.62 -2.97 16 9 C -0.22 -4.19 9.55 -38.92 -0.37 -4.56 16 10 C -0.08 -1.70 10.01 -39.73 -0.40 -2.10 16 11 C -0.22 -5.19 7.17 -38.81 -0.28 -5.47 16 12 C 0.08 2.07 5.10 -106.87 -0.55 1.53 16 13 C -0.44 -11.96 9.57 -37.73 -0.36 -12.32 16 14 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 15 C 0.08 2.16 5.40 -17.34 -0.09 2.07 16 16 N -0.80 -21.24 13.93 55.55 0.77 -20.47 16 17 Si 0.91 20.39 24.52 -169.99 -4.17 16.22 16 18 H -0.27 -5.78 6.71 56.52 0.38 -5.40 16 19 H -0.29 -6.25 7.11 56.52 0.40 -5.84 16 20 H -0.24 -5.59 6.86 56.52 0.39 -5.21 16 21 C -0.14 -3.29 9.34 -38.44 -0.36 -3.65 16 22 C -0.14 -1.35 7.40 -25.92 -0.19 -1.54 16 23 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.41 7.98 -51.93 -0.41 0.00 16 26 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 0.90 7.99 -51.92 -0.41 0.48 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.11 1.60 7.47 -51.92 -0.39 1.21 16 30 H 0.40 5.10 6.74 -40.82 -0.28 4.82 16 31 H 0.10 1.48 6.38 -52.48 -0.33 1.14 16 32 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.10 2.38 4.72 -52.49 -0.25 2.14 16 34 H 0.29 6.82 8.30 -40.82 -0.34 6.48 16 35 H 0.12 2.86 7.64 -52.48 -0.40 2.46 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 LS Contribution 305.38 15.07 4.60 4.60 Total: -1.00 -28.91 305.38 -7.83 -36.74 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -5.02 Total: 6.93 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -3.82 Total: -20.51 kcal Atomic # 7 Polarization: -32.04 SS G_CDS: 0.49 Total: -31.55 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.08 Total: -12.44 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.17 Total: 16.22 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.91 -7.83 -36.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080048399.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.532 kcal (2) G-P(sol) polarization free energy of solvation -28.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds