Wall clock time and date at job start Mon Mar 30 2020 00:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53782 * 113.61347 * 2 1 4 4 C 1.53959 * 87.01983 * 220.04777 * 3 2 1 5 5 N 1.46504 * 113.66811 * 139.93403 * 4 3 2 6 6 C 1.34766 * 119.99894 * 107.44213 * 5 4 3 7 7 O 1.21544 * 120.00458 * 359.97438 * 6 5 4 8 8 C 1.47893 * 119.99781 * 179.97438 * 6 5 4 9 9 C 1.39922 * 120.02517 * 359.71958 * 8 6 5 10 10 C 1.38318 * 120.35790 * 179.74567 * 9 8 6 11 11 C 1.37757 * 120.41354 * 0.55463 * 10 9 8 12 12 C 1.40741 * 120.03725 * 359.70258 * 11 10 9 13 13 C 1.41440 * 120.17930 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00067 * 150.17297 * 13 12 11 15 15 C 1.39940 * 119.99623 * 330.17900 * 13 12 11 16 16 N 1.30833 * 119.99441 * 161.72571 * 15 13 12 17 17 Si 1.86791 * 120.00250 * 341.72505 * 15 13 12 18 18 H 1.48505 * 109.47000 * 95.41529 * 17 15 13 19 19 H 1.48498 * 109.47318 * 215.41440 * 17 15 13 20 20 H 1.48496 * 109.47397 * 335.41929 * 17 15 13 21 21 C 1.38994 * 120.02632 * 179.97438 * 8 6 5 22 22 C 1.53775 * 113.61616 * 262.39255 * 2 1 3 23 23 H 1.08998 * 109.46831 * 159.14046 * 1 2 3 24 24 H 1.09001 * 109.47006 * 279.14191 * 1 2 3 25 25 H 1.09006 * 109.47229 * 39.14061 * 1 2 3 26 26 H 1.08996 * 112.85011 * 131.19076 * 2 1 3 27 27 H 1.09008 * 113.61706 * 334.56160 * 3 2 1 28 28 H 1.08999 * 113.61946 * 105.46776 * 3 2 1 29 29 H 1.09007 * 113.53072 * 270.80800 * 4 3 2 30 30 H 0.96996 * 119.99536 * 287.43185 * 5 4 3 31 31 H 1.08005 * 119.81342 * 359.97438 * 9 8 6 32 32 H 1.08002 * 119.79480 * 180.28264 * 10 9 8 33 33 H 1.07998 * 119.98111 * 179.72072 * 11 10 9 34 34 H 0.97006 * 119.99284 * 179.97438 * 16 15 13 35 35 H 1.08007 * 120.20091 * 359.95560 * 21 8 6 36 36 H 1.09000 * 113.61090 * 254.52702 * 22 2 1 37 37 H 1.08995 * 113.61733 * 25.43000 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4091 0.0000 4 6 3.1923 0.8643 -0.9893 5 7 3.5311 1.8020 -2.0627 6 6 4.7262 2.4248 -2.0611 7 8 5.5230 2.2088 -1.1690 8 6 5.0684 3.3710 -3.1450 9 6 4.1540 3.6155 -4.1755 10 6 4.4648 4.5031 -5.1898 11 6 5.6821 5.1478 -5.2037 12 6 6.6167 4.9105 -4.1786 13 6 7.8672 5.5712 -4.1895 14 1 8.3684 5.7941 -3.2592 15 6 8.4550 5.9363 -5.4059 16 7 9.4015 6.8392 -5.4301 17 14 7.8882 5.1344 -6.9949 18 1 6.8675 5.9941 -7.6465 19 1 9.0487 4.9666 -7.9061 20 1 7.2977 3.8053 -6.6956 21 6 6.3007 4.0140 -3.1437 22 6 2.1460 -0.1865 -1.3966 23 1 -0.3633 -0.9603 -0.3659 24 1 -0.3633 0.1633 1.0146 25 1 -0.3634 0.7971 -0.6487 26 1 1.9532 -0.6615 0.7558 27 1 1.4945 2.1705 -0.4290 28 1 2.5650 1.7025 0.9625 29 1 4.0711 0.4400 -0.5034 30 1 2.8952 1.9745 -2.7745 31 1 3.1989 3.1113 -4.1768 32 1 3.7503 4.6885 -5.9783 33 1 5.9192 5.8360 -6.0015 34 1 9.8091 7.0919 -6.2733 35 1 7.0109 3.8256 -2.3521 36 1 2.5650 -1.1794 -1.5598 37 1 1.4946 0.1377 -2.2080 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080048399.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:02:46 Heat of formation + Delta-G solvation = -30.241677 kcal Electronic energy + Delta-G solvation = -18446.415756 eV Core-core repulsion = 15573.479707 eV Total energy + Delta-G solvation = -2872.936049 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.29006 -39.81153 -38.75729 -35.62478 -34.76335 -32.44418 -31.77426 -29.96158 -27.14192 -26.61669 -25.24853 -23.06304 -22.41931 -21.58150 -20.56265 -19.44155 -18.09075 -17.47274 -17.13668 -16.48365 -16.36481 -15.89427 -15.46182 -15.40717 -14.58413 -14.47656 -14.39231 -13.92028 -13.86153 -13.38340 -13.36631 -13.10152 -12.84628 -12.73085 -12.59229 -12.30786 -11.84173 -11.75352 -11.57667 -11.38935 -11.20293 -11.17385 -10.77930 -10.06710 -9.63763 -9.55300 -8.92653 -6.56830 0.16976 0.73420 1.24875 1.41286 1.48213 1.93952 2.12186 2.23984 2.64153 3.43834 3.58627 3.64614 3.87762 3.92472 3.95987 4.25501 4.40429 4.50859 4.59358 4.63342 4.80751 4.83968 4.88044 4.90624 4.92939 4.95188 5.14127 5.15152 5.16985 5.39481 5.41941 5.45689 5.62737 5.67143 5.71900 5.83449 6.10504 6.28976 6.60188 6.65574 6.72866 7.25374 8.16631 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.045685 B = 0.004133 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.740482 B = 6773.388052 C = 7082.924667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 C -0.149 4.149 4 C 0.104 3.896 5 N -0.699 5.699 6 C 0.560 3.440 7 O -0.590 6.590 8 C -0.115 4.115 9 C -0.182 4.182 10 C -0.082 4.082 11 C -0.225 4.225 12 C 0.066 3.934 13 C -0.491 4.491 14 H 0.048 0.952 15 C 0.045 3.955 16 N -0.850 5.850 17 Si 0.969 3.031 18 H -0.245 1.245 19 H -0.277 1.277 20 H -0.252 1.252 21 C -0.169 4.169 22 C -0.128 4.128 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.415 0.585 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.107 0.893 34 H 0.295 0.705 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.109 -12.264 1.550 22.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.122 4.122 3 C -0.188 4.188 4 C -0.001 4.001 5 N -0.350 5.350 6 C 0.349 3.651 7 O -0.472 6.472 8 C -0.118 4.118 9 C -0.201 4.201 10 C -0.100 4.100 11 C -0.245 4.245 12 C 0.064 3.936 13 C -0.520 4.520 14 H 0.067 0.933 15 C -0.170 4.170 16 N -0.476 5.476 17 Si 0.791 3.209 18 H -0.170 1.170 19 H -0.204 1.204 20 H -0.175 1.175 21 C -0.189 4.189 22 C -0.166 4.166 23 H 0.085 0.915 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.113 0.887 27 H 0.110 0.890 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.254 0.746 31 H 0.168 0.832 32 H 0.167 0.833 33 H 0.125 0.875 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -18.346 -12.252 2.102 22.161 hybrid contribution 0.766 0.434 -0.373 0.956 sum -17.580 -11.818 1.729 21.253 Atomic orbital electron populations 1.21682 0.93096 1.02460 1.02201 1.22278 0.96789 0.95975 0.97186 1.23613 0.97752 0.98298 0.99159 1.22735 0.97081 0.91155 0.89118 1.45774 1.16592 1.44118 1.28517 1.18681 0.81839 0.79930 0.84604 1.90675 1.51160 1.65756 1.39589 1.19751 0.95971 0.99419 0.96653 1.21012 0.99873 1.03654 0.95558 1.21057 0.95583 0.95021 0.98299 1.21398 0.95758 1.05626 1.01688 1.17767 0.93196 0.90247 0.92420 1.19471 1.04294 1.33801 0.94434 0.93340 1.26927 0.93582 0.92476 1.03988 1.69732 1.22699 1.23957 1.31214 0.85446 0.78320 0.81047 0.76115 1.16960 1.20362 1.17530 1.21206 0.96976 0.99664 1.01081 1.23396 0.96325 0.98521 0.98382 0.91470 0.92300 0.92236 0.88713 0.88995 0.92358 0.89352 0.74640 0.83189 0.83320 0.87518 0.89406 0.89499 0.90149 0.87850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.70 71.98 0.70 -0.77 16 2 C -0.10 -1.45 4.35 -10.27 -0.04 -1.50 16 3 C -0.15 -2.88 7.45 31.18 0.23 -2.65 16 4 C 0.10 2.40 4.24 45.58 0.19 2.59 16 5 N -0.70 -18.80 5.31 -442.58 -2.35 -21.14 16 6 C 0.56 21.74 7.77 86.80 0.67 22.41 16 7 O -0.59 -27.75 15.93 -3.86 -0.06 -27.82 16 8 C -0.11 -4.80 5.87 -20.13 -0.12 -4.92 16 9 C -0.18 -6.13 9.55 22.70 0.22 -5.92 16 10 C -0.08 -2.93 10.01 22.17 0.22 -2.70 16 11 C -0.23 -10.12 7.17 22.77 0.16 -9.96 16 12 C 0.07 3.46 5.10 -21.32 -0.11 3.35 16 13 C -0.49 -28.61 9.57 23.47 0.22 -28.38 16 14 H 0.05 3.11 8.06 -2.91 -0.02 3.08 16 15 C 0.04 2.42 5.40 85.25 0.46 2.88 16 16 N -0.85 -47.38 13.93 21.83 0.30 -47.07 16 17 Si 0.97 41.87 24.52 68.60 1.68 43.55 16 18 H -0.25 -9.56 6.71 99.48 0.67 -8.89 16 19 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 20 H -0.25 -11.06 6.86 99.48 0.68 -10.38 16 21 C -0.17 -8.57 9.34 23.01 0.21 -8.35 16 22 C -0.13 -1.91 7.40 31.12 0.23 -1.68 16 23 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.06 0.62 7.98 -2.38 -0.02 0.60 16 26 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.09 1.65 7.99 -2.38 -0.02 1.63 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.09 2.50 7.47 -2.38 -0.02 2.49 16 30 H 0.41 8.40 6.74 -92.71 -0.63 7.77 16 31 H 0.15 3.47 6.38 -2.91 -0.02 3.46 16 32 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 33 H 0.11 4.69 4.72 -2.91 -0.01 4.68 16 34 H 0.30 14.64 8.30 -92.70 -0.77 13.87 16 35 H 0.09 4.76 7.64 -2.91 -0.02 4.74 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.10 1.21 8.08 -2.39 -0.02 1.19 16 Total: -1.00 -68.94 305.38 3.22 -65.71 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 0.39 Total: 22.35 kcal Atomic # 6 Polarization: -38.85 SS G_CDS: 3.26 Total: -35.59 kcal Atomic # 7 Polarization: -66.17 SS G_CDS: -2.05 Total: -68.22 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.06 Total: -27.82 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.68 Total: 43.55 kcal Total: -68.94 3.22 -65.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080048399.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.472 kcal (2) G-P(sol) polarization free energy of solvation -68.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds